mRNA_H-canaliculatus_M_contigs8035.1.3 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ7_9PHAE) HSP 1 Score: 360 bits (923), Expect = 7.530e-118 Identity = 181/238 (76.05%), Postives = 212/238 (89.08%), Query Frame = 1
Query: 10 PRGSGARVQVDFRFHNICLSVEVSKAKAALMGGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKAGTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRKILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQ 723
P+ + +QVDFRF ++ SVEVS+ KA+LMGG+AG K++L+GVSG V+SGQILAIIG SGAGKTSLLDV VGKV AGT+GL +TG++TVNG+ MS+SFFLENAAYVPQEDRLWSALTVRENLMFACK+Y P +S+ + KRVD+V+ASLGL+GCQH K+GN +KGVSGGQKRRTSIG+ELVV RKILFLDEPTSGLDAASAS+IMALL LASETG+IIITSVHQPS+RVFNSFDQ
Sbjct: 62 PKPTTFTLQVDFRFRDVRYSVEVSQTKASLMGGEAGVKQILKGVSGGVESGQILAIIGSSGAGKTSLLDVLVGKVSAGTKGLDITGEVTVNGKTMSKSFFLENAAYVPQEDRLWSALTVRENLMFACKMYSPALSRGECNKRVDKVLASLGLEGCQHIKVGNVFLKGVSGGQKRRTSIGVELVVQRKILFLDEPTSGLDAASASEIMALLKHLASETGVIIITSVHQPSSRVFNSFDQ 299
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: ATP-binding (cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3K1_ECTSI) HSP 1 Score: 350 bits (898), Expect = 3.490e-117 Identity = 179/244 (73.36%), Postives = 207/244 (84.84%), Query Frame = 1
Query: 1 LCRPRGSGARVQVDFRFHNICLSVEVSKAKAALMGGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKAGTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRKILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQASI 732
L +PR S +VD RF ++ SVEVSK KA+LMGG+AG K +LRGVSGAV+SGQILAIIG SGAGKTSLLDV VGKV A T+GL++TGD+ VNG+ MS+SFFLENAAYVPQEDRLWSALTVRENL FACK+Y P +S+ + KRVDEV+ SLGL+GCQHTK+GN +KG SGG+KRRTSIG+ELV RKILFLDEPTSGLDA SAS+IM LL LAS+TGMIIITSVHQPS+RVFNSFDQ +
Sbjct: 54 LGKPRNSPDEPKVDLRFRDVRYSVEVSKTKASLMGGEAGVKHILRGVSGAVESGQILAIIGSSGAGKTSLLDVLVGKVSARTKGLNITGDVNVNGKAMSKSFFLENAAYVPQEDRLWSALTVRENLTFACKMYSPMLSRGECSKRVDEVLVSLGLEGCQHTKVGNIFLKGTSGGEKRRTSIGVELVFLRKILFLDEPTSGLDAGSASEIMDLLRGLASDTGMIIITSVHQPSSRVFNSFDQVML 297
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: ABC (transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U6_ECTSI) HSP 1 Score: 357 bits (916), Expect = 1.750e-116 Identity = 184/253 (72.73%), Postives = 214/253 (84.58%), Query Frame = 1
Query: 1 LCRPRGSGARVQVDFRFHNICLSVEVSKAKAALMGGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKAGTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRKILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQASIQSVLSSCLR 759
L +P S +VDFRF ++ SVEVSK KA+LMGG+AG K +L GVSGAV+SGQILAIIG SGAGKTSLLDV VGKV AGT+GL +TGD+TVNG+ MS+SFFLENAAYVPQEDRLWSALTVRENL FACK+Y P +S+ +KRV++V+ASLGL+GCQHTK+GN +KG+SGGQKRRTSIG+ELVV RKILFLDEPTSGLDAASAS+IM+LL RLASET +III SVHQPS+RVFNSFDQ V + LR
Sbjct: 24 LSKPWKSPGDQKVDFRFRDVRFSVEVSKMKASLMGGEAGVKHILGGVSGAVESGQILAIIGSSGAGKTSLLDVLVGKVSAGTKGLDITGDVTVNGKAMSKSFFLENAAYVPQEDRLWSALTVRENLTFACKMYSPALSRADSDKRVNKVLASLGLEGCQHTKVGNVFLKGISGGQKRRTSIGVELVVQRKILFLDEPTSGLDAASASEIMSLLRRLASETDVIIIASVHQPSSRVFNSFDQPLDTDVAGTVLR 276
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ8_9PHAE) HSP 1 Score: 350 bits (899), Expect = 4.930e-112 Identity = 180/230 (78.26%), Postives = 204/230 (88.70%), Query Frame = 1
Query: 37 VDFRFHNICLSVEVSKAKAALMGGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKAGTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKI-GNTLIKGVSGGQKRRTSIGIELVVHRKILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQ 723
VDFRF ++ SVEVSK KA+LMGGKAG K +LRGVSGAV+SGQILAIIGPSGAGKTSLLDV VGK+ AGT+GL VTGDITVNG+ MS+SFFLENAAYVPQEDRLWSALTVRENL FACK+Y P MS+++ KRV +V+A LGL+GCQHTK+ GN ++G SGGQKRRTSIG+ELV RKILFLDEPTSGLDAASAS+IM LL LAS+TGMIII+SVHQPS+RVFNSFDQ
Sbjct: 4 VDFRFRDVRYSVEVSKTKASLMGGKAGVKHILRGVSGAVESGQILAIIGPSGAGKTSLLDVLVGKISAGTKGLDVTGDITVNGKVMSKSFFLENAAYVPQEDRLWSALTVRENLTFACKMYSPMMSREECNKRVGKVLARLGLEGCQHTKVVGNVFLRGTSGGQKRRTSIGVELVFQRKILFLDEPTSGLDAASASEIMDLLSGLASDTGMIIISSVHQPSSRVFNSFDQ 233
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: ATP (transporter, putative MET type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W0_ECTSI) HSP 1 Score: 320 bits (819), Expect = 3.980e-105 Identity = 162/208 (77.88%), Postives = 185/208 (88.94%), Query Frame = 1
Query: 100 MGGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKAGTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRKILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQ 723
MGG AG KK+LRGVSGAV+SGQILAIIG SG+GKTSLLDV VG++ T+GL +TG++TVNG+ MS+SFFLENAAYVPQEDRLWSALTVRENLM ACK+Y P MS+ + + RVDEV+ SLGL+ CQHTK+GN +KG+SGGQKRRTSIG+ELVV RKILFLDEPTSGLDAASAS IM LL RLASETG+IIITSVHQPS+RVFNSFDQ
Sbjct: 1 MGGIAGVKKILRGVSGAVESGQILAIIGSSGSGKTSLLDVLVGRINPNTKGLHITGNVTVNGKAMSKSFFLENAAYVPQEDRLWSALTVRENLMLACKMYIPNMSRAECDHRVDEVLTSLGLESCQHTKVGNIFLKGISGGQKRRTSIGVELVVQRKILFLDEPTSGLDAASASGIMDLLRRLASETGVIIITSVHQPSSRVFNSFDQ 208
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: Hypothetical (protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DIS1_9EUKA) HSP 1 Score: 218 bits (556), Expect = 6.380e-65 Identity = 123/243 (50.62%), Postives = 162/243 (66.67%), Query Frame = 1
Query: 31 VQVDFRFHNICLSVEVSKAKAALM--GGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKAGTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRKILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQASIQSVLSSC 753
V+ FRF N+ + V V K A G K +LRG+SG V SGQ+LAIIG SG+GKT+LLD + G +TG + VNG P+S++FF AYV Q+DRLW ALTV ENL A KLY P++S +R +++EV+ + GL CQ TK+GN LIKG+SGGQ+RR SI +EL+ ILFLDEPTSGLD+ SA++IM LLG LA + ++II S+HQPS+R F +FD + S +C
Sbjct: 83 VKFCFRFTNVKVKVAVPKWMPAFSTPGVPGQTKHILRGISGTVHSGQVLAIIGASGSGKTTLLDQL--SLMPMMPGGKMTGRVEVNGCPVSQAFFKSKCAYVNQDDRLWGALTVFENLEIASKLYEPKLSSIKRRGKIEEVLRATGLLSCQQTKVGNALIKGISGGQRRRVSIAVELMGSPAILFLDEPTSGLDSKSAAEIMQLLGLLAKDLNVLIICSIHQPSSRTFFAFDLILLLSKGRAC 323
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YAG1_9EUKA) HSP 1 Score: 213 bits (541), Expect = 2.890e-61 Identity = 112/227 (49.34%), Postives = 156/227 (68.72%), Query Frame = 1
Query: 46 RFHNICLSVEVSK--AKAALMGGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKAGTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRKILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFD 720
RF +I +SV V + A G K++L+G+SG+ SG++LAIIG SG+GKT+LLD + G +G +TVN +PM+ FF + AYV Q+DRLW ALTV ENL A KLY P +S ++R+ R++ ++ + GL C+HTK+GN LIKG+SGGQ+RR SI +EL+ ILFLDEPTSGLD+ SA++IM LL ++A ++I+ S+HQPSTR F +FD
Sbjct: 49 RFEDIRVSVSVPSWMPEFATPGVPGQTKQILKGISGSASSGEVLAIIGASGSGKTTLLDQLAHQPLM--SGGEFSGTLTVNEQPMTNKFFKAHCAYVHQDDRLWGALTVYENLENAAKLYSPNISAEERKDRIEMILEATGLQSCKHTKVGNVLIKGISGGQRRRVSIAVELMGSPAILFLDEPTSGLDSKSAAEIMELLNQIAKRLNVLIVCSIHQPSTRTFLAFD 273
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: Hypothetical (protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QS61_9CHLO) HSP 1 Score: 203 bits (516), Expect = 1.170e-57 Identity = 106/232 (45.69%), Postives = 156/232 (67.24%), Query Frame = 1
Query: 49 FHNICLSVEVSKAKAALMGGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKA-GTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRK-ILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQASIQS 738
F N+ ++V+K L GGK G +++L+ VSG V SGQ++AIIGPSGAGKT+LLD + ++V+G + V+GE MS+ FF E AY+PQ+D L +ALT +E+L ++ +LYG ++ D+ E + LGL GC +G+ I+G+SGGQKRR S+ EL+ K I FLDEPTSGLDAA+A++IM ++ + A + ++++ SVHQPS+RVF +FDQ + S
Sbjct: 43 FDNLTFDIKVTKLGTFLHGGKVGVRRILQDVSGRVASGQVMAIIGPSGAGKTTLLDTLASQPHVVNNNNITVSGVVAVDGEKMSKDFFSERCAYLPQQDALCTALTTKEHLAYSARLYG--VASDELESNCTTTMKDLGLTGCADVMVGSVFIRGLSGGQKRRLSLACELIAGNKAIYFLDEPTSGLDAAAATEIMKVVTQAAKQRNVVMVASVHQPSSRVFYAFDQLLVLS 272
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHB7_9STRA) HSP 1 Score: 202 bits (513), Expect = 6.780e-57 Identity = 107/231 (46.32%), Postives = 153/231 (66.23%), Query Frame = 1
Query: 40 DFRFHNICLSVEVSKAKAALMGGKAGAKKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKA-GTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSK-DQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRK-ILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQ 723
F +I SV +K A L GG+ G ++L G+SG V SG +AI+GPSGAGKT+LL+ + + +++ G +T++GE ++RS+F ++ A+VPQ D LW A+T ENL +A +LYG + + +++ LGL C+ K+GN +KG+SGGQKRR S+G ELV RK ILFLDEPTSGLDAASAS+IM L+ R+A +I+ S+HQPS+ VF +FD+
Sbjct: 72 SLEFQDITFSVTNTKLGALLTGGQVGTHQILHGISGRVISGMAMAIMGPSGAGKTTLLETLARQPSVVNNENIALGGSVTIDGEQLTRSYFAKHCAFVPQYDALWPAMTAVENLEYAARLYGDFGGDVENMNAAISDIMEELGLSSCKDVKVGNVFLKGLSGGQKRRLSLGCELVSGRKEILFLDEPTSGLDAASASEIMKLIRRIAKIFNLIVCCSIHQPSSHVFFAFDR 302
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Match: ABC(ABCG) (family transporter: White protein-like protein (ABCG) (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S576_OSTLU) HSP 1 Score: 189 bits (481), Expect = 1.850e-56 Identity = 100/206 (48.54%), Postives = 141/206 (68.45%), Query Frame = 1
Query: 121 KKVLRGVSGAVDSGQILAIIGPSGAGKTSLLDVFVGKVKAGTQGLSVTGDITVNGEPMSRSFFLENAAYVPQEDRLWSALTVRENLMFACKLYGPRMSKDQREKRVDEVVASLGLDGCQHTKIGNTLIKGVSGGQKRRTSIGIELVVHRKILFLDEPTSGLDAASASDIMALLGRLASETGMIIITSVHQPSTRVFNSFDQASIQS 738
K++L G+SG V SG++LAI+GPSGAGKT L+D+ + K GT TGD+ +NG P++ F ++ + VPQ DRLW+ LTV E L FA L + S +++++RVD ++ ++GL +HTK GN +KG+SGGQKRR S+ I LV +LFLDEPTSGLDAA+A+ IMA L LA + I ++HQPS+ VF+ FD+ + S
Sbjct: 1 KEILHGISGQVCSGEVLAILGPSGAGKTCLIDLLTLEGKGGTY----TGDVRLNGIPITPELFTKHCSTVPQVDRLWAFLTVEETLTFAADLL-LKSSAEEKKQRVDAIINTVGLASSRHTKCGNQFLKGLSGGQKRRLSLAIALVSSPSVLFLDEPTSGLDAAAAASIMAFLKELAQAANIAICCTIHQPSSAVFHGFDRIMLLS 201 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8035.1.3 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8035.1.3 >prot_H-canaliculatus_M_contigs8035.1.3 ID=prot_H-canaliculatus_M_contigs8035.1.3|Name=mRNA_H-canaliculatus_M_contigs8035.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=254bp LCRPRGSGARVQVDFRFHNICLSVEVSKAKAALMGGKAGAKKVLRGVSGAback to top mRNA from alignment at H-canaliculatus_M_contigs8035:725..4581- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8035.1.3 ID=mRNA_H-canaliculatus_M_contigs8035.1.3|Name=mRNA_H-canaliculatus_M_contigs8035.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3857bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8035:725..4581- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8035:725..4581- >mRNA_H-canaliculatus_M_contigs8035.1.3 ID=mRNA_H-canaliculatus_M_contigs8035.1.3|Name=mRNA_H-canaliculatus_M_contigs8035.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8035:725..4581- (Hapterophycus canaliculatus Oshoro7m male)back to top |