mRNA_H-canaliculatus_M_contigs8006.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8006.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8006.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8006.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8006contigH-canaliculatus_M_contigs8006:440..3436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size747
Hectar predicted targeting categoryother localisation
Exons6
Cds size747
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8006.1.1prot_H-canaliculatus_M_contigs8006.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8006 440..3436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.4720821-CDS-H-canaliculatus_M_contigs8006:439..5401696854130.4720821-CDS-H-canaliculatus_M_contigs8006:439..540Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8006 440..540 +
1696854130.4861367-CDS-H-canaliculatus_M_contigs8006:1073..11751696854130.4861367-CDS-H-canaliculatus_M_contigs8006:1073..1175Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8006 1074..1175 +
1696854130.4975183-CDS-H-canaliculatus_M_contigs8006:1530..17291696854130.4975183-CDS-H-canaliculatus_M_contigs8006:1530..1729Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8006 1531..1729 +
1696854130.510003-CDS-H-canaliculatus_M_contigs8006:2403..25011696854130.510003-CDS-H-canaliculatus_M_contigs8006:2403..2501Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8006 2404..2501 +
1696854130.5214026-CDS-H-canaliculatus_M_contigs8006:2799..29151696854130.5214026-CDS-H-canaliculatus_M_contigs8006:2799..2915Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8006 2800..2915 +
1696854130.5330565-CDS-H-canaliculatus_M_contigs8006:3305..34361696854130.5330565-CDS-H-canaliculatus_M_contigs8006:3305..3436Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8006 3306..3436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8006.1.1

>prot_H-canaliculatus_M_contigs8006.1.1 ID=prot_H-canaliculatus_M_contigs8006.1.1|Name=mRNA_H-canaliculatus_M_contigs8006.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=249bp
RLLLERGAPADERDTQEWTPLHVACHSGRTDTVSRFLLTAGSTASARTDK
NLTALHIACESGFTDTARLLLETGLSVSAVDDEAYSALHLASAGGHTDVV
RLLLQAGAGPDSSTERNHRPLHLAAQYGHSSVVHLLLEAGATVDVRDDGN
YTPTHLACTYGHTETTRILLQYGADVEALDSEEWSPFHWACQLGNVYTAR
LLMSRGADRAARTSRGHQALHLAAENGHTETVRMLLDNQADPNAKDEVI
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mRNA from alignment at H-canaliculatus_M_contigs8006:440..3436+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8006.1.1 ID=mRNA_H-canaliculatus_M_contigs8006.1.1|Name=mRNA_H-canaliculatus_M_contigs8006.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2997bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8006:440..3436+ (Hapterophycus canaliculatus Oshoro7m male)
AGGCTCTTGCTGGAGCGCGGCGCACCAGCCGACGAACGTGACACGCAGGA
GTGGACCCCTTTGCATGTCGCGTGCCACTCCGGCAGAACAGACACAGTGA
GGTGGGTCTGGGGCGTATGTTTGTGCTCTGGTGCTCGTGCGTGCGTTGCC
CGTGGTCGTCGGAAGTCCGTATATCGCCGCTTTTGTCGGGCTCGCCGTGT
GTGTACTCCGCGTCTTTCCATCCGGGGACCCCGAATCGAGTACTTCCCCG
CAAGCGTATGCGTGCCCCCCCCGCCCTCTTTCTCTCCCCCCCCCCCGCCT
CGCGCGAAATAGGGAAAGCCGGAAGTAGTGCGGCATGCAAGTCGTTTAGG
AGGACCGGTGGGAGGTGGTGGTTCTGACGACTCGGGCCCAAGCTAGACCC
TGTTCTTGGCCCTCTGTTCTTCGCTCTAGTCCGGGAGATGGCCGAGCTCG
CCGCACCCGTACCGCATTCGCTCCGCGCCGCGGCGACAGCCTCGACACGC
ACGCAAGGCTCGTGCAGAAAAACGTCCGCCAGCCATGTAGGCAGCCCTCC
AAACCGTCTGACCGCTCTCCTTTTTCTTGCTTTTGTCTGCCTCTGTCCCG
CCGTGCTCGGTTTCCGGCCACTTCGGGGGCGAAGCAGATTCCTGTTGACA
GCGGGCAGCACCGCGTCGGCCAGGACGGACAAGAATCTCACGGCGCTGCA
CATCGCCTGCGAGAGCGGCTTCACGGATACCGCCAGGTGCTTGTGTGCCT
TGTTCTTGAGGTCGGGCTCTGCGCGGGAGTTGTTTCTTTGGGGGTGGATC
GTGGTAGGCGGTGGGAAACGGTCGGGTCAGTGACGGTGACAACTAGGGTC
GGAAATCACGACAGGCCACCGGTCAAGTACAAGAAGGCAGCAGTATCGGC
GACAAAACAGCAGCCGCAGCAACGACTACAGCTACCAGAAAACACCAACT
GCAAGGACAGTAGCAGCCACAAACAGAAGGCGCGCGATCACTGCAACTAC
GGCTGCGGCGGCCTCAAACACAACAAGAACAACAACCGCATTCAACAACA
GCGTCCACAACAACAACGTCGGCGATGCCCAACGACAACAGGCTGCTCCT
CGAGACCGGTCTGAGTGTCTCCGCAGTGGACGACGAGGCGTACTCCGCTC
TCCACCTCGCCTCCGCCGGGGGGCACACGGATGTCGTGCGCCTCTTGCTG
CAGGCCGGGGCCGGGCCGGATTCTTCCACGGAGCGGAATCACCGGCCGCT
GCACCTCGCCGCGCAGTACGGGCACAGCTCCGTCGTCCATGTGCGTGATT
GTGAAGGTTCGGTGTGTTTCATTCGTTCGGCGGGGTGGTGTATAAAACTG
CAAGGGTTTTCGGCGGCTTCCGCCGCCACGCTTGGGGAAGCGGTTCCAAG
ATGCATGGCCACAGCAGTCCACGTCGTTTTTGACTGGAATTAAGTGCGTG
TCCGCACGCACCAAGGGAATGATTGGCTGCGCAGCAGAGAAGACGTGGAG
TACGTTCCGAAGGATTCGGAACGAGCGAAAAAGGTGCAAGATGGGCACAA
GAGAAGTTTTGATAGATCCGGCATGAACAAATTGTTCGTACGATGCCCAG
CAGCGAAGAGGTTAGAATATTCGGAACGAATGGAGCAAATGAGCCGTGCC
TGCACGGCTTACAAACTCGCACGCACGCGCGCCCGGACCAGCCTCCGCTA
ATACCGGTGAAGGGCTGCGAAGCAGAGATGATCGGCAAGCTCTGAACCAA
CAGGCTTCGAACAATAATCGGCAGACGAGGACGTCAGCTACTTAGACCTT
TTCCCTTTTGAGTCCCGTTTTTTTGTTGGCTTTCTTGTTTCTCTCTTCAC
TGCTGCCGTCGCCGTCCTCACTCATGAGATTTCGACGCACCTTCAGCTTT
CTGTTCCTCTTCTCCCCTATCCGGTCTTGTCCCCCCGATTCCCTGCCCCA
TGTTGCGGGTGCAGCTGCTGCTAGAGGCGGGGGCGACGGTGGACGTGAGA
GACGACGGAAACTACACTCCGACGCACCTCGCCTGCACCTACGGCCACAC
CGAGACCACCCGGTGAGACAGCTCGACTGCGGTAGATTATTACCGGCATA
CCCACGACGTATCTTGACGGCATGCTCCCTATCTGCTGGAGCGGCATTGA
TGTTGGGTAAGTTAGCCTGTGACCACGGGAATCGACCGCGTCAAGTGTGG
ATCAGCACGGACAGATGAAAGTACTGGGCAGAGAGATCGGAACGATTTTT
AATGACATCGGTTCCAGAAGTTGTTTTGGATCTTCACGACACGCGCGCTC
CGATCTGAACGGACGAACGCCCCCCCCCCCCCTCCCCCCGTCTGCGACCG
CTATGGCCAGGATTCTGCTGCAGTACGGTGCAGATGTGGAGGCGTTGGAC
TCTGAGGAATGGTCACCTTTCCACTGGGCTTGCCAGCTGGGAAACGTCTA
CACCGCTCGTCTGCTGATGTCCAGAGGTGGGTGCAGGAGGTGGGGTGGGT
GGATGAGGTGGTGGTTCTTGACGTCGAAAATGCTGTCACCATCTTCATCG
GCGGTGTTTGTCGTCTCGACGTTTTCGGAGGTTGTGAGACTCCTAAGGCG
AGTTAAGACGTGGCCAATGAATCGTGCGTCGCCCGCGCCGTTCTTACTCT
TCTTTAGCCGTCGGTGCTGGCATCAAGTTGCACCTTCTCACTCACGAAGG
GGCAGGATTCTTTGTTGTCGCAGCCGCGTCGCGATTAAACACTCTAATCG
TCTGTACTTGGCCGGAAGCCGCCCACGCACCGTGCGCGATCGCGGCCGTG
CGTCGTTTTTGAGCAAATCCACCCCTCTCTCCGCGGACGTACTGCATCCG
CGGACCCCCGGCGCAGGGGCTGACCGAGCGGCTCGCACGTCGCGGGGCCA
CCAGGCGCTTCACCTCGCGGCGGAAAACGGGCACACGGAAACCGTGAGGA
TGCTGCTCGACAACCAGGCGGATCCGAACGCGAAGGACGAGGTGATT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8006:440..3436+

>mRNA_H-canaliculatus_M_contigs8006.1.1 ID=mRNA_H-canaliculatus_M_contigs8006.1.1|Name=mRNA_H-canaliculatus_M_contigs8006.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=747bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8006:440..3436+ (Hapterophycus canaliculatus Oshoro7m male)
AGGCTCTTGCTGGAGCGCGGCGCACCAGCCGACGAACGTGACACGCAGGA
GTGGACCCCTTTGCATGTCGCGTGCCACTCCGGCAGAACAGACACAGTGA
GCAGATTCCTGTTGACAGCGGGCAGCACCGCGTCGGCCAGGACGGACAAG
AATCTCACGGCGCTGCACATCGCCTGCGAGAGCGGCTTCACGGATACCGC
CAGGCTGCTCCTCGAGACCGGTCTGAGTGTCTCCGCAGTGGACGACGAGG
CGTACTCCGCTCTCCACCTCGCCTCCGCCGGGGGGCACACGGATGTCGTG
CGCCTCTTGCTGCAGGCCGGGGCCGGGCCGGATTCTTCCACGGAGCGGAA
TCACCGGCCGCTGCACCTCGCCGCGCAGTACGGGCACAGCTCCGTCGTCC
ATCTGCTGCTAGAGGCGGGGGCGACGGTGGACGTGAGAGACGACGGAAAC
TACACTCCGACGCACCTCGCCTGCACCTACGGCCACACCGAGACCACCCG
GATTCTGCTGCAGTACGGTGCAGATGTGGAGGCGTTGGACTCTGAGGAAT
GGTCACCTTTCCACTGGGCTTGCCAGCTGGGAAACGTCTACACCGCTCGT
CTGCTGATGTCCAGAGGGGCTGACCGAGCGGCTCGCACGTCGCGGGGCCA
CCAGGCGCTTCACCTCGCGGCGGAAAACGGGCACACGGAAACCGTGAGGA
TGCTGCTCGACAACCAGGCGGATCCGAACGCGAAGGACGAGGTGATT
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