mRNA_H-canaliculatus_M_contigs7946.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7946.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7946.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitate (hydratase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.530e-38
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 MSGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
            MSGTPLS LDPKGSPTIDS+YARMEKNI+AARKTLGRPLTLSEKIIYGHFD+P T+PVRGETYLKLRPDRVAMQ
Sbjct:   23 MSGTPLSVLDPKGSPTIDSAYARMEKNIHAARKTLGRPLTLSEKIIYGHFDEPSTLPVRGETYLKLRPDRVAMQ 96
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BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitate (hydratase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7X3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.340e-30
Identity = 58/74 (78.38%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 MSGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
             SGTPLS LDP GSPTI+ +Y  M  NI AARKTLGRPLTLSEKI+YGH D+P  VPVRGETYLKLRPDRVAMQ
Sbjct:   29 FSGTPLSVLDPAGSPTIEQTYESMSANIQAARKTLGRPLTLSEKIVYGHLDNPSQVPVRGETYLKLRPDRVAMQ 102
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BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitate (hydratase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC46_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.190e-29
Identity = 58/73 (79.45%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    4 SGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
            SGTPLS LDP GSPTI+ +Y RM  NI+  RKTLGRPLTLSEKIIYGH  D  TVPVRGETYLKLRPDRVAMQ
Sbjct:   33 SGTPLSVLDPPGSPTIEETYDRMASNIHTVRKTLGRPLTLSEKIIYGHLVDSKTVPVRGETYLKLRPDRVAMQ 105
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitate (hydratase, mitochondrial n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P924_CAFRO)

HSP 1 Score: 117 bits (294), Expect = 4.130e-29
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 MSGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
            MS TPLS LDP GSPTI+ +YA+M  NI  ARK+LGRPLTLSEKI+YGH +DP + PVRGETYLKLRPDRVAMQ
Sbjct:   29 MSSTPLSVLDPAGSPTIEETYAKMGANIEIARKSLGRPLTLSEKIVYGHLEDPASNPVRGETYLKLRPDRVAMQ 102
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B7B0_9DINO)

HSP 1 Score: 110 bits (275), Expect = 3.450e-28
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 MSGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
            MS TPLS LDP GSPTI+++Y  M   +   RK L RPLTLSEKI+YGH DD + VPVRGETYLKLRPDRVAMQ
Sbjct:   20 MSATPLSVLDPAGSPTIEATYKSMADKLEVVRKNLNRPLTLSEKIVYGHLDDAEQVPVRGETYLKLRPDRVAMQ 93
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BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitase (domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y503_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.040e-26
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   13 PLSALDPKGSPTIDSSYARMEKNIYAARKTLG-RPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
            PLS LDPKGSPTID +Y +MEKN++  RK +G +PLTL+EKIIYGH DD +T  VRGETYLKLRPDRVAMQ
Sbjct:   10 PLSVLDPKGSPTIDQTYEKMEKNLFTVRKNMGNKPLTLAEKIIYGHLDDANTKAVRGETYLKLRPDRVAMQ 80
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitate (hydratase, mitochondrial n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812P3I8_9DINO)

HSP 1 Score: 110 bits (275), Expect = 1.520e-26
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 MSGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
            MSGTPLS LDP GSPTI+ +Y  ++  +   RK L RPLTL+EKI+YGH DDP+ +PVRG TYLKLRPDRVAMQ
Sbjct:    1 MSGTPLSVLDPPGSPTIEETYKAIDDKLKVVRKNLNRPLTLAEKIVYGHLDDPEQLPVRGTTYLKLRPDRVAMQ 74
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitate (hydratase, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSY3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.850e-26
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 MSGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
            ++GTPLS LDPKGSPTI+ +YA+M   +   RKTL RPLTL+EKI++ H DDP T   RGETYLKLRPDRVAMQ
Sbjct:   70 LAGTPLSVLDPKGSPTIEETYAKMASRLQVVRKTLNRPLTLAEKILFAHLDDPTTKVTRGETYLKLRPDRVAMQ 143
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitate (hydratase, mitochondrial n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W6K0_GLOUD)

HSP 1 Score: 109 bits (272), Expect = 3.890e-26
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   13 PLSALDPKGSPTIDSSYARMEKNIYAARKTLG-RPLTLSEKIIYGHFDDPDTVPVRGETYLKLRPDRVAMQ 222
            PLS LDPKGSPTID +Y +MEKN++  RKT G +PLTL+EKIIYGH D+ D V VRGETYLKLRPDRVAMQ
Sbjct:   34 PLSVLDPKGSPTIDQTYEKMEKNLHHVRKTWGNKPLTLAEKIIYGHLDNADQVAVRGETYLKLRPDRVAMQ 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Match: Aconitate (hydratase, mitochondrial (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EJ04_9STRA)

HSP 1 Score: 108 bits (269), Expect = 9.810e-26
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    4 SGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHFDDPDT-VPVRGETYLKLRPDRVAMQ 222
            S TPLS LDPKGS TID +YA++E N+   RKTL RPLTL+EKIIYGH DDP    P RGETYLKLRPDRVAMQ
Sbjct:  173 SSTPLSVLDPKGSATIDETYAKIEHNLGVIRKTLNRPLTLAEKIIYGHLDDPHFGTPKRGETYLKLRPDRVAMQ 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7946.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Aconitate4.530e-3891.89hydratase, mitochondrial n=2 Tax=Ectocarpus TaxID=... [more]
Aconitate1.340e-3078.38hydratase, mitochondrial n=1 Tax=Fibrocapsa japoni... [more]
Aconitate1.190e-2979.45hydratase, mitochondrial n=1 Tax=Tribonema minus T... [more]
Aconitate4.130e-2975.68hydratase, mitochondrial n=3 Tax=Cafeteria roenber... [more]
Hypothetical3.450e-2870.27protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 Ta... [more]
Aconitase1.040e-2673.24domain-containing protein (Fragment) n=2 Tax=Notho... [more]
Aconitate1.520e-2667.57hydratase, mitochondrial n=1 Tax=Symbiodinium sp. ... [more]
Aconitate2.850e-2667.57hydratase, mitochondrial n=2 Tax=Monodopsidaceae T... [more]
Aconitate3.890e-2674.65hydratase, mitochondrial n=2 Tax=Pythiaceae TaxID=... [more]
Aconitate9.810e-2672.97hydratase, mitochondrial (Fragment) n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7946contigH-canaliculatus_M_contigs7946:912..1684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQN5
Preferred nameACO2
PFAMsAconitase,Aconitase_C
Model size222
Max annot lvl2759|Eukaryota
KEGG rclassRC00497,RC00498,RC00618
KEGG koko:K01681
KEGG ReactionR01324,R01325,R01900
KEGG Pathwayko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00173,M00740
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006520,GO:0006536,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0008198,GO:0009060,GO:0009064,GO:0009295,GO:0009605,GO:0009607,GO:0009987,GO:0015980,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031012,GO:0031347,GO:0031349,GO:0031974,GO:0032501,GO:0032502,GO:0035821,GO:0035900,GO:0042645,GO:0043167,GO:0043169,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0044003,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044416,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048037,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050896,GO:0051536,GO:0051538,GO:0051539,GO:0051540,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055114,GO:0061008,GO:0062039,GO:0062040,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072350,GO:0075136,GO:0080134,GO:0097159,GO:1901363,GO:1901564,GO:1901605
Exons2
Evalue2.93e-39
EggNOG OGsCOG1048@1|root,KOG0453@2759|Eukaryota
EC4.2.1.3
Descriptionhomoaconitate hydratase activity
Cds size222
COG categoryC
BiGG ReactioniMM904.YLR304C,iND750.YLR304C
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854126.7872958-CDS-H-canaliculatus_M_contigs7946:911..10651696854126.7872958-CDS-H-canaliculatus_M_contigs7946:911..1065Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7946 912..1065 -
1696854126.8022094-CDS-H-canaliculatus_M_contigs7946:1616..16841696854126.8022094-CDS-H-canaliculatus_M_contigs7946:1616..1684Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7946 1617..1684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7946.1.1prot_H-canaliculatus_M_contigs7946.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7946 912..1684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7946.1.1

>prot_H-canaliculatus_M_contigs7946.1.1 ID=prot_H-canaliculatus_M_contigs7946.1.1|Name=mRNA_H-canaliculatus_M_contigs7946.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=74bp
MSGTPLSALDPKGSPTIDSSYARMEKNIYAARKTLGRPLTLSEKIIYGHF
DDPDTVPVRGETYLKLRPDRVAMQ
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mRNA from alignment at H-canaliculatus_M_contigs7946:912..1684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7946.1.1 ID=mRNA_H-canaliculatus_M_contigs7946.1.1|Name=mRNA_H-canaliculatus_M_contigs7946.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=773bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7946:912..1684- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGGGACGCCCTTGAGCGCCCTTGACCCCAAGGGCAGCCCCACCAT
TGACTCGTCTTACGCCAGGTGCGACCTTATTGTACCCGCGACTGTCCCTG
TGTCTCGGTCTGCCTCTTGTCGGGTGTTCGCGGGGATGGGTTCGTGAGCA
GAGCTTTTCCGCGAGACACGGGGAACAAAAGCAGCGCCATTTTCATCTGA
GAGCGAGAGGAAACAGAGAAAAGAGAGAGGGGAAGATAAGAGTGGGAGAG
ACGGGGATGATCGGAGAGATAGAGAGATAGAGAGATTGCCCAGTAGGCAA
GAGAGAGGAGAGCCGGGGGGAGGAGAGACCAGAGAAGAGTGAACATTCGG
CGAGATGCATTGCGGACCAGGGAAGGTGCAACGAGTGCTGTATTGTGCGG
CCCAAAGCTTCAGACTAGCCCGAAAGCAGTAAGCCGGCGCTCAAGCGCGG
CATCGGCGCCACCCGGTATTGTGCCCTTTACCTGTTGCTGAGTGTGCTTT
CCCACTTTGCATCGGTTTACCTCCACCATATCTCTTTCCTCTTTCCTCTT
TCCTCTTTCCTCTTTCCTCTTTCCTTTGCCGTTCTCGCCCCGCCCCTCGT
CGGTCGTCGTCGATCGCAGGATGGAGAAGAACATCTACGCCGCGCGCAAG
ACCTTGGGCCGACCGCTGACCCTCTCCGAGAAGATCATCTACGGCCACTT
CGACGACCCCGACACGGTCCCGGTCCGAGGGGAGACGTACCTCAAGCTCC
GCCCCGACCGCGTCGCGATGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7946:912..1684-

>mRNA_H-canaliculatus_M_contigs7946.1.1 ID=mRNA_H-canaliculatus_M_contigs7946.1.1|Name=mRNA_H-canaliculatus_M_contigs7946.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=222bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7946:912..1684- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGGGACGCCCTTGAGCGCCCTTGACCCCAAGGGCAGCCCCACCAT
TGACTCGTCTTACGCCAGGATGGAGAAGAACATCTACGCCGCGCGCAAGA
CCTTGGGCCGACCGCTGACCCTCTCCGAGAAGATCATCTACGGCCACTTC
GACGACCCCGACACGGTCCCGGTCCGAGGGGAGACGTACCTCAAGCTCCG
CCCCGACCGCGTCGCGATGCAG
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