mRNA_H-canaliculatus_M_contigs7852.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7852.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7852.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7852.1.1 vs.
Match: DNA (helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-15
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 DDAYLVARFAAGIRSPRIGKLKLPQLESFGCCANVPFPLLLKTAQ 135
            DDAYL+ARFAAGIRSPRIGKLKL QL SFGCCAN PFP LL  A+
Sbjct:  717 DDAYLLARFAAGIRSPRIGKLKLAQLGSFGCCANHPFPALLARAE 761
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BLAST of mRNA_H-canaliculatus_M_contigs7852.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.280e-14
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DDAYLVARFAAGIRSPRIGKLKLPQLESFGCCANVPFPLLLKTAQ 135
            DDAYL+ARFAAGIRSPRIGKLKL QL SFGCCAN PF  LL  A+
Sbjct:  727 DDAYLLARFAAGIRSPRIGKLKLAQLGSFGCCANDPFLALLARAE 771
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BLAST of mRNA_H-canaliculatus_M_contigs7852.1.1 vs.
Match: DNA (helicase n=1 Tax=Fusarium langsethiae TaxID=179993 RepID=A0A0N0V509_FUSLA)

HSP 1 Score: 48.1 bits (113), Expect = 3.930e-5
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 DDAYLVARFAAGIRSPRIGKLKLPQLESFGCCANVPFPLLLK 126
            DDA  +AR A GI+SPR+GKLKL + ++F C A+  F  +LK
Sbjct:  653 DDARFLARIAFGIKSPRVGKLKLDKTKAFMCMADQDFDAILK 694
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BLAST of mRNA_H-canaliculatus_M_contigs7852.1.1 vs.
Match: DEAD (box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G9_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:    1 DDAYLVARFAAGIRSPRIGKLKLPQLESFGCCANVPF 111
            DDA L+ARFA G+R+PR+ +LKL     FG CA   F
Sbjct:  772 DDALLLARFAVGVRTPRVARLKLAAAPGFGACAECAF 808
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7852.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
DNA1.010e-1582.22helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Uncharacterized2.280e-1480.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DNA3.930e-552.38helicase n=1 Tax=Fusarium langsethiae TaxID=179993... [more]
DEAD5.370e-554.05box helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7852contigH-canaliculatus_M_contigs7852:4826..4960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZN1
PFAMsDEAD,Helicase_C,RecQ_Zn_bind
Model size135
Max annot lvl2759|Eukaryota
KEGG koko:K03654
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.65e-16
EggNOG OGsCOG0514@1|root,KOG0351@2759|Eukaryota
EC3.6.4.12
Descriptionfour-way junction helicase activity
Cds size135
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854121.4952567-CDS-H-canaliculatus_M_contigs7852:4825..49601696854121.4952567-CDS-H-canaliculatus_M_contigs7852:4825..4960Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7852 4826..4960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7852.1.1prot_H-canaliculatus_M_contigs7852.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7852 4826..4960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7852.1.1

>prot_H-canaliculatus_M_contigs7852.1.1 ID=prot_H-canaliculatus_M_contigs7852.1.1|Name=mRNA_H-canaliculatus_M_contigs7852.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=45bp
DDAYLVARFAAGIRSPRIGKLKLPQLESFGCCANVPFPLLLKTAQ
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mRNA from alignment at H-canaliculatus_M_contigs7852:4826..4960+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7852.1.1 ID=mRNA_H-canaliculatus_M_contigs7852.1.1|Name=mRNA_H-canaliculatus_M_contigs7852.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7852:4826..4960+ (Hapterophycus canaliculatus Oshoro7m male)
GACGATGCCTACCTAGTGGCAAGATTTGCGGCCGGGATTCGCAGCCCGAG
AATAGGAAAGCTGAAGCTCCCGCAGTTGGAGTCGTTCGGGTGCTGCGCTA
ATGTCCCCTTCCCTCTGCTGTTGAAGACGGCCCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7852:4826..4960+

>mRNA_H-canaliculatus_M_contigs7852.1.1 ID=mRNA_H-canaliculatus_M_contigs7852.1.1|Name=mRNA_H-canaliculatus_M_contigs7852.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7852:4826..4960+ (Hapterophycus canaliculatus Oshoro7m male)
GACGATGCCTACCTAGTGGCAAGATTTGCGGCCGGGATTCGCAGCCCGAG
AATAGGAAAGCTGAAGCTCCCGCAGTTGGAGTCGTTCGGGTGCTGCGCTA
ATGTCCCCTTCCCTCTGCTGTTGAAGACGGCCCAG
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