mRNA_H-canaliculatus_M_contigs78299.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78299.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78299.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (endopeptidase complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK43_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 7.070e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA
Sbjct:   95 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 145
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (subunit beta type-5 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWW3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.260e-27
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLG+QCR+YELRNKERISVA
Sbjct:   17 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGMQCRLYELRNKERISVA 67
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BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.280e-26
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLG QCRMYELRNKERISVA
Sbjct:   98 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGTQCRMYELRNKERISVA 148
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (endopeptidase complex n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMN8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.980e-26
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLG+QCR+YELRNKERISVA
Sbjct:   95 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGMQCRLYELRNKERISVA 145
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (endopeptidase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R777_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.000e-26
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINPYLLGTMAGGAADC+FWERNLG+QCR+YELRNKERISVA
Sbjct:   41 ASGTVKKVIEINPYLLGTMAGGAADCAFWERNLGMQCRLYELRNKERISVA 91
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (endopeptidase complex n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H536_HETAK)

HSP 1 Score: 104 bits (259), Expect = 5.080e-26
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLG+QCR+YELRNKERISVA
Sbjct:   96 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGMQCRLYELRNKERISVA 146
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (endopeptidase complex n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RND0_THAOC)

HSP 1 Score: 103 bits (257), Expect = 5.120e-26
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINP+LLGTMAGGAADCSFWERNLGIQCRMYELRNK+RISVA
Sbjct:   65 ASGTVKKVIEINPFLLGTMAGGAADCSFWERNLGIQCRMYELRNKKRISVA 115
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGK8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.320e-26
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCR+YELR+KERISVA
Sbjct:   96 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRLYELRHKERISVA 146
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (endopeptidase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7G5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.340e-25
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISVA 153
            ASGTVKKVIEINPYLLGTMAGGAADC+FWERNLG+QCR+YELRNKERISVA
Sbjct:  121 ASGTVKKVIEINPYLLGTMAGGAADCAFWERNLGMQCRLYELRNKERISVA 171
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Match: Proteasome (endopeptidase complex n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LQI5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.290e-25
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISV 150
            ASGTVKKVIEINPYLLGTMAGGAADC+FWERNLG QCRMYELRNKERISV
Sbjct:   98 ASGTVKKVIEINPYLLGTMAGGAADCAFWERNLGTQCRMYELRNKERISV 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78299.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Proteasome7.070e-27100.00endopeptidase complex n=1 Tax=Ectocarpus siliculos... [more]
Proteasome9.260e-2796.08subunit beta type-5 n=1 Tax=Phaeomonas parva TaxID... [more]
Proteasome3.280e-2698.04endopeptidase complex n=1 Tax=Tribonema minus TaxI... [more]
Proteasome4.980e-2696.08endopeptidase complex n=1 Tax=Phaeomonas parva Tax... [more]
Proteasome5.000e-2694.12endopeptidase complex n=1 Tax=Rhizochromulina mari... [more]
Proteasome5.080e-2696.08endopeptidase complex n=1 Tax=Heterosigma akashiwo... [more]
Proteasome5.120e-2696.08endopeptidase complex n=1 Tax=Thalassiosira oceani... [more]
Proteasome9.320e-2696.08subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
Proteasome2.340e-2594.12endopeptidase complex n=1 Tax=Rhizochromulina mari... [more]
Proteasome4.290e-2596.00endopeptidase complex n=1 Tax=Fibrocapsa japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78299contigH-canaliculatus_M_contigs78299:6..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LK43
Preferred namePSMB11
PFAMsProteasome
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K02737,ko:K02740,ko:K05654,ko:K11598
KEGG TC3.A.1.209
KEGG Pathwayko02010,ko03050,ko04145,ko04612,ko05168,ko05340,map02010,map03050,map04145,map04612,map05168,map05340
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000502,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0016787,GO:0019221,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0019941,GO:0022607,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030162,GO:0030163,GO:0030217,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034340,GO:0034515,GO:0034622,GO:0036037,GO:0036211,GO:0042110,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043374,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045087,GO:0045321,GO:0045444,GO:0046631,GO:0046632,GO:0046649,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051336,GO:0051603,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060337,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0071704,GO:0071840,GO:0080090,GO:0080129,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369,GO:1990111
Exons2
Evalue1.16e-27
EggNOG OGsCOG0638@1|root,KOG0175@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
Cds size153
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854119.2475896-CDS-H-canaliculatus_M_contigs78299:5..1131696854119.2475896-CDS-H-canaliculatus_M_contigs78299:5..113Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78299 6..113 +
1696854119.263335-CDS-H-canaliculatus_M_contigs78299:456..5011696854119.263335-CDS-H-canaliculatus_M_contigs78299:456..501Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78299 457..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78299.1.1prot_H-canaliculatus_M_contigs78299.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78299 6..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78299.1.1

>prot_H-canaliculatus_M_contigs78299.1.1 ID=prot_H-canaliculatus_M_contigs78299.1.1|Name=mRNA_H-canaliculatus_M_contigs78299.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=51bp
ASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRMYELRNKERISV
A
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mRNA from alignment at H-canaliculatus_M_contigs78299:6..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78299.1.1 ID=mRNA_H-canaliculatus_M_contigs78299.1.1|Name=mRNA_H-canaliculatus_M_contigs78299.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=496bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78299:6..501+ (Hapterophycus canaliculatus Oshoro7m male)
GCGTCGGGGACGGTGAAAAAGGTGATTGAGATCAACCCTTACCTTCTCGG
AACCATGGCGGGGGGAGCAGCTGATTGCTCGTTTTGGGAGCGCAACCTAG
GGATTCAGGTAAGAGCGCGAATCTGGCTTGGAGATGAGGTAGTAGGAGTG
TAGCCCAGGGGGGGCATTCGGAAAAGCTTTGTATGTTCAGCTCAAGGGCG
CGGGGAGTCGCCCGTTTCTTCTGCGAGTAAAGGGCGTTTTTTCTAGCGGT
CCCGGACAACGATGGCAGATCCAAGGAGCGAAGGGCGACATCAGCCCGCA
CTTTTTCTTCCATGCTCTAGGCCATACCGAATTCACAGATGCACACTCAG
GGAAGTTGCTCAAATTGTTGATGCGTGTTCAGGACGACCGCTGAGAGCGA
TCCCCTGCACATGGTTTGTCTATCCCGCCCCCCGCTATCTCGTCGATGCA
GTGCCGAATGTACGAGCTGCGCAACAAAGAGCGGATCTCCGTGGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78299:6..501+

>mRNA_H-canaliculatus_M_contigs78299.1.1 ID=mRNA_H-canaliculatus_M_contigs78299.1.1|Name=mRNA_H-canaliculatus_M_contigs78299.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78299:6..501+ (Hapterophycus canaliculatus Oshoro7m male)
GCGTCGGGGACGGTGAAAAAGGTGATTGAGATCAACCCTTACCTTCTCGG
AACCATGGCGGGGGGAGCAGCTGATTGCTCGTTTTGGGAGCGCAACCTAG
GGATTCAGTGCCGAATGTACGAGCTGCGCAACAAAGAGCGGATCTCCGTG
GCA
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