mRNA_H-canaliculatus_M_contigs7807.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7807.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7807.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (family protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7W4EZ78_9FLAO)

HSP 1 Score: 53.9 bits (128), Expect = 4.770e-7
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWDFERRNSCLTG 165
            QY+MAEKA LFGD      IMNT+DP      GR  +NFN +IWD  + +  L G
Sbjct:  143 QYMMAEKARLFGDEEVREEIMNTSDPKLMKALGRKVRNFNPEIWDKAKYSIVLNG 197
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (family protein n=2 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7W4EH51_9FLAO)

HSP 1 Score: 53.5 bits (127), Expect = 6.710e-7
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWDFERRNSCLTG 165
            QY+MAEKA LFGD      IMNT+DP      GR  +NFN +IWD  + +  L G
Sbjct:  150 QYMMAEKARLFGDEEMREEIMNTSDPKLMKALGRKVRNFNPEIWDKAKYSIVLNG 204
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (domain-containing protein n=9 Tax=Capnocytophaga TaxID=1016 RepID=A0A1Z4BQQ2_9FLAO)

HSP 1 Score: 52.4 bits (124), Expect = 1.730e-6
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWDFERRNSCLTG 165
            QY+MAEKA LFGD      IMNT+DP      GR  +NF+ Q+WD  + +  L G
Sbjct:  142 QYMMAEKARLFGDEEVEEEIMNTSDPKLMKALGRKVRNFDPQVWDKAKYSIVLNG 196
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (family protein n=2 Tax=Capnocytophaga genosp. AHN8471 TaxID=327574 RepID=UPI001931C091)

HSP 1 Score: 52.4 bits (124), Expect = 1.730e-6
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWDFERRNSCLTG 165
            QY+MAEKA LFGD      IMNT+DP      GR  +NF+ Q+WD  + +  L G
Sbjct:  142 QYMMAEKARLFGDEEVEEEIMNTSDPKLMKALGRKVRNFDPQVWDKAKYSIVLNG 196
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BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (domain-containing protein n=1 Tax=Capnocytophaga sp. oral taxon 338 str. F0234 TaxID=888059 RepID=F0IFL7_9FLAO)

HSP 1 Score: 52.4 bits (124), Expect = 1.760e-6
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWDFERRNSCLTG 165
            QY+MAEKA LFGD      IMNT+DP      GR  +NF+ Q+WD  + +  L G
Sbjct:  151 QYMMAEKARLFGDKEVEEEIMNTSDPKLMKALGRKVRNFDPQVWDKAKYSIVLNG 205
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BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (family protein n=2 Tax=unclassified Paenibacillus TaxID=185978 RepID=UPI00178B458C)

HSP 1 Score: 50.8 bits (120), Expect = 3.560e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWD 135
            QY+MAEKA LFGD++ L  IMNT  P     +GR  K+F+ ++WD
Sbjct:   59 QYMMAEKARLFGDNNMLEAIMNTIYPKEMKAYGRAVKSFDSRVWD 103
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BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (domain-containing protein n=1 Tax=Capnocytophaga sp. oral taxon 863 str. F0517 TaxID=1227266 RepID=U2AVT8_9FLAO)

HSP 1 Score: 51.2 bits (121), Expect = 4.570e-6
Identity = 26/55 (47.27%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWDFERRNSCLTG 165
            QY+MAEKA LFGD      IMNT DP      GR  +NF+ Q+WD  + +  L G
Sbjct:  151 QYMMAEKARLFGDKEVEEEIMNTPDPKLMKALGRKVRNFDPQVWDKVKYSIVLNG 205
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BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (family protein n=2 Tax=Clostridia TaxID=186801 RepID=UPI0018A110AD)

HSP 1 Score: 50.4 bits (119), Expect = 5.120e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWD 135
            Q++MAEKA +FGD+  L  IM   +P A   FGR  KNF+++IWD
Sbjct:   59 QFMMAEKARMFGDTDMLGNIMEAREPKAMKAFGRAVKNFDKEIWD 103
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BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (domain-containing protein n=12 Tax=Anaerotruncus colihominis TaxID=169435 RepID=B0P8R2_9FIRM)

HSP 1 Score: 49.3 bits (116), Expect = 1.340e-5
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWDFERRNSCLTG 165
            QY+MAEKA +FGD+  L  IM +  P     +GR  +NF+Q +WD    +  LTG
Sbjct:   60 QYMMAEKARIFGDNEMLEKIMASKFPKEMKAYGRAVRNFDQAVWDSRCYDRVLTG 114
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Match: NADAR (family protein n=1 Tax=Paenibacillus sanguinis TaxID=225906 RepID=UPI0003682555)

HSP 1 Score: 48.9 bits (115), Expect = 1.840e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 QYIMAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIW 132
            QY+MAEKA LFGD+  L  IM +  P     FGR  ++F+QQ+W
Sbjct:   59 QYMMAEKARLFGDTEMLEAIMKSGHPKEMKAFGRAVRHFDQQVW 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7807.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NADAR4.770e-749.09family protein n=1 Tax=Flavobacteriaceae bacterium... [more]
NADAR6.710e-749.09family protein n=2 Tax=Flavobacteriaceae bacterium... [more]
NADAR1.730e-647.27domain-containing protein n=9 Tax=Capnocytophaga T... [more]
NADAR1.730e-647.27family protein n=2 Tax=Capnocytophaga genosp. AHN8... [more]
NADAR1.760e-647.27domain-containing protein n=1 Tax=Capnocytophaga s... [more]
NADAR3.560e-651.11family protein n=2 Tax=unclassified Paenibacillus ... [more]
NADAR4.570e-647.27domain-containing protein n=1 Tax=Capnocytophaga s... [more]
NADAR5.120e-651.11family protein n=2 Tax=Clostridia TaxID=186801 Rep... [more]
NADAR1.340e-543.64domain-containing protein n=12 Tax=Anaerotruncus c... [more]
NADAR1.840e-550.00family protein n=1 Tax=Paenibacillus sanguinis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7807contigH-canaliculatus_M_contigs7807:5010..5174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog706436.HMPREF9074_08331
PFAMsDUF1768
Model size165
Max annot lvl976|Bacteroidetes
KEGG koko:K09935
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.57e-05
EggNOG OGsCOG5113@1|root,COG3236@2|Bacteria,4NP2J@976|Bacteroidetes,1I1X4@117743|Flavobacteriia,1EQB2@1016|Capnocytophaga
DescriptionPsort location Cytoplasmic, score 9.26
Cds size156
COG categoryO
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.1848233-UTR-H-canaliculatus_M_contigs7807:5009..50181696854117.1848233-UTR-H-canaliculatus_M_contigs7807:5009..5018Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7807 5010..5018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.1985977-CDS-H-canaliculatus_M_contigs7807:5018..51741696854117.1985977-CDS-H-canaliculatus_M_contigs7807:5018..5174Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7807 5019..5174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7807.1.1prot_H-canaliculatus_M_contigs7807.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7807 5019..5174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7807.1.1

>prot_H-canaliculatus_M_contigs7807.1.1 ID=prot_H-canaliculatus_M_contigs7807.1.1|Name=mRNA_H-canaliculatus_M_contigs7807.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=52bp
MAEKAGLFGDSHALTLIMNTADPFAHNNFGRCAKNFNQQIWDFERRNSCL
TG
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mRNA from alignment at H-canaliculatus_M_contigs7807:5010..5174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7807.1.1 ID=mRNA_H-canaliculatus_M_contigs7807.1.1|Name=mRNA_H-canaliculatus_M_contigs7807.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7807:5010..5174+ (Hapterophycus canaliculatus Oshoro7m male)
CAATACATCATGGCCGAGAAGGCTGGCCTCTTCGGCGACTCCCACGCCCT
CACCCTAATCATGAACACTGCTGACCCTTTTGCACACAATAATTTTGGCC
GCTGTGCTAAGAATTTCAACCAGCAAATCTGGGACTTCGAGCGACGGAAC
AGCTGTCTCACGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7807:5010..5174+

>mRNA_H-canaliculatus_M_contigs7807.1.1 ID=mRNA_H-canaliculatus_M_contigs7807.1.1|Name=mRNA_H-canaliculatus_M_contigs7807.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7807:5010..5174+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCGAGAAGGCTGGCCTCTTCGGCGACTCCCACGCCCTCACCCTAAT
CATGAACACTGCTGACCCTTTTGCACACAATAATTTTGGCCGCTGTGCTA
AGAATTTCAACCAGCAAATCTGGGACTTCGAGCGACGGAACAGCTGTCTC
ACGGGC
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