mRNA_H-canaliculatus_M_contigs77558.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77558.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77558.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 5.390e-19
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:   13 MSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVSL 159
            M+AVF+VLLTVNLLKGGGAF SPVGI CGSF+FWATS+LSFVYL+ VSL
Sbjct:    1 MTAVFVVLLTVNLLKGGGAFDSPVGIVCGSFSFWATSVLSFVYLVGVSL 49
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD73_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 7.150e-18
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 QVGIMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVSL 159
            +VGIM+AVF+VLL VNLLKGGGAF SPVGI CGSF+FWATS+LSF YL+ VSL
Sbjct:  280 KVGIMTAVFVVLLIVNLLKGGGAFDSPVGIVCGSFSFWATSVLSFAYLVGVSL 332
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV46_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.610e-13
Identity = 33/53 (62.26%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 QVGIMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVSL 159
            +VG+++ VF+V+L+VNLLKGGGAF SP+GIECGS+AFW  +   FV++L VSL
Sbjct:  320 KVGVLTGVFVVVLSVNLLKGGGAFPSPLGIECGSYAFWGATGFIFVWVLGVSL 372
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.610e-13
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 QVGIMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVSL 159
            +VG+++ VF+V+L VNLLKGGGAF SP+GIECGS+AFW  +   FV++L VSL
Sbjct:  339 KVGVLTGVFVVVLAVNLLKGGGAFPSPLGIECGSYAFWGATGFIFVWVLGVSL 391
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FP42_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.450e-11
Identity = 26/52 (50.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 QVGIMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVS 156
            +VG++ AVF+V+L +NLLKGGGAF SP+GI+CGS  +WA++ + F+++ +++
Sbjct:  285 KVGVLWAVFVVVLAINLLKGGGAFPSPLGIQCGSNGYWASTAIMFLWICIIT 336
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TMF5_THAOC)

HSP 1 Score: 65.5 bits (158), Expect = 4.450e-11
Identity = 26/52 (50.00%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 QVGIMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVS 156
             + +++ +F+V+LT+N+LKGGGAF+SP+GIECGS +FW   IL  +++ +VS
Sbjct:  306 NIALIATLFMVVLTINILKGGGAFESPLGIECGSASFWVAQILLLIWICVVS 357
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.310e-11
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 QVGIMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVY 141
            +V I+S VF+V+L VN+LKGGGAF SP+GI CGSF FW  S+   V+
Sbjct:  299 KVAILSGVFVVVLAVNILKGGGAFPSPLGIRCGSFMFWGASVFILVW 345
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZS3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.900e-10
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 QVGIMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVS 156
             +  +  +F+V+L VN++KGGGAF SP+GIECGS AFWA ++L   ++LL+S
Sbjct:  296 NISALVVMFVVVLFVNVMKGGGAFPSPLGIECGSTAFWAANVLMVTWILLIS 347
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM66_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.790e-9
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 IMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVS 156
            ++ A+F V++ VNLLKGGGAF SP+GI CGS AFW ++     ++LLVS
Sbjct:   90 VLVAMFSVIILVNLLKGGGAFPSPLGITCGSTAFWLSNAFMIAWILLVS 138
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BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4E3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.870e-9
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   10 IMSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVS 156
            ++  +F+V+LT+NLLKGGGAF SP GIECGS  FW  ++L   ++L++S
Sbjct:  188 VLVTLFVVVLTINLLKGGGAFPSPFGIECGSRGFWIANMLMLGWILIIS 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77558.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.390e-1983.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.150e-1879.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.610e-1362.26protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.610e-1362.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical4.450e-1150.00protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized4.450e-1150.00protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Uncharacterized8.310e-1159.57protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical2.900e-1051.92protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical1.790e-955.10protein (Fragment) n=1 Tax=Craspedostauros austral... [more]
Hypothetical1.870e-953.06protein n=2 Tax=Amphiprora paludosa TaxID=265537 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77558contigH-canaliculatus_M_contigs77558:342..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFQ5
PFAMsTauE
Model size162
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.72e-20
EggNOG OGs28PZK@1|root,2QWNB@2759|Eukaryota
DescriptionSulfite exporter TauE/SafE
Cds size150
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854112.7795894-CDS-H-canaliculatus_M_contigs77558:341..4911696854112.7795894-CDS-H-canaliculatus_M_contigs77558:341..491Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77558 342..491 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854112.7962525-UTR-H-canaliculatus_M_contigs77558:491..5031696854112.7962525-UTR-H-canaliculatus_M_contigs77558:491..503Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs77558 492..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77558.1.1prot_H-canaliculatus_M_contigs77558.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77558 342..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77558.1.1

>prot_H-canaliculatus_M_contigs77558.1.1 ID=prot_H-canaliculatus_M_contigs77558.1.1|Name=mRNA_H-canaliculatus_M_contigs77558.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=50bp
MSAVFLVLLTVNLLKGGGAFKSPVGIECGSFAFWATSILSFVYLLLVSL*
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mRNA from alignment at H-canaliculatus_M_contigs77558:342..503-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77558.1.1 ID=mRNA_H-canaliculatus_M_contigs77558.1.1|Name=mRNA_H-canaliculatus_M_contigs77558.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77558:342..503- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGGTATCATGAGCGCTGTCTTCTTGGTGCTGCTGACCGTGAACCT
TCTCAAGGGCGGTGGGGCCTTCAAGAGCCCCGTCGGGATCGAGTGCGGTT
CCTTCGCCTTCTGGGCGACTTCCATCCTGTCCTTCGTCTACTTGCTGCTC
GTTTCCTTGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77558:342..503-

>mRNA_H-canaliculatus_M_contigs77558.1.1 ID=mRNA_H-canaliculatus_M_contigs77558.1.1|Name=mRNA_H-canaliculatus_M_contigs77558.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=150bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77558:342..503- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCGCTGTCTTCTTGGTGCTGCTGACCGTGAACCTTCTCAAGGGCGG
TGGGGCCTTCAAGAGCCCCGTCGGGATCGAGTGCGGTTCCTTCGCCTTCT
GGGCGACTTCCATCCTGTCCTTCGTCTACTTGCTGCTCGTTTCCTTGTAA
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