mRNA_H-canaliculatus_M_contigs7743.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS72_ECTSI) HSP 1 Score: 197 bits (501), Expect = 1.640e-53 Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 1
Query: 529 GVKGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 894
GVKG++GL NEGN CYLNASLQALARCAPFRAHLVECVP P+VAGRPCPLA++MS+LY+EMW+D+ AETPA+V+ ALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV
Sbjct: 64 GVKGVVGLTNEGNFCYLNASLQALARCAPFRAHLVECVPGPSVAGRPCPLAFAMSKLYSEMWSDEGXXXXXXXXXXRAETPAEVIRALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 185
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE) HSP 1 Score: 193 bits (491), Expect = 5.270e-52 Identity = 93/122 (76.23%), Postives = 104/122 (85.25%), Query Frame = 1
Query: 529 GVKGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 894
GVKG++GL NEGN CYLNASLQALARCAPFR HLVECVP P+VAGRPCPLA++MS+LY+EMW+D+ A TPA+V+ ALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV
Sbjct: 23 GVKGVVGLTNEGNFCYLNASLQALARCAPFRTHLVECVPGPSVAGRPCPLAFAMSKLYSEMWSDEGXXXXXXXXXXXAATPAEVIRALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 144
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=2 Tax=Trichoplax TaxID=10227 RepID=B3RNM1_TRIAD) HSP 1 Score: 83.6 bits (205), Expect = 3.230e-14 Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 1
Query: 520 GLLGVKGMMGLKNEGNSCYLNASLQALARCAPFRAHLVEC------VPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPVS 897
G L +G+ GL N GN+CY++A+LQA++ C P + +EC +P ++A R C +L +MW+ KR TP + + ++ K N F G+ Q DAHE LR IL+LLHEE + +S
Sbjct: 142 GQLKPRGLCGLSNLGNTCYISAALQAMSNCVPLTQYCLECEKYIARIPVDSIAKRYC-------KLIQDMWSK---------KRNDYVTPTEFVQSVKKANPLFRGSSQQDAHEFLRCILNLLHEETKLLIS 257
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=8 Tax=Lacertinae TaxID=162266 RepID=A0A670IUE9_PODMU) HSP 1 Score: 81.6 bits (200), Expect = 1.470e-13 Identity = 45/120 (37.50%), Postives = 62/120 (51.67%), Query Frame = 1
Query: 535 KGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 894
+G+ GLKN GN+CY+NA+LQAL+ C P ++C +P + S +L TE+W R A P + + N F G Q DA E LR ++DLLHEEL+ PV
Sbjct: 146 RGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGSLARTDKKPA-ICRSYYKLMTELWHKS---------RPGAVVPTNLFQGIKTVNPTFRGYSQQDAQEFLRCLMDLLHEELKEPV 255
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=5 Tax=Iguania TaxID=8511 RepID=H9GB39_ANOCA) HSP 1 Score: 80.9 bits (198), Expect = 2.680e-13 Identity = 45/120 (37.50%), Postives = 62/120 (51.67%), Query Frame = 1
Query: 535 KGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 894
+G+ GLKN GN+CY+NA+LQAL+ C P ++C +P + S +L TE+W R A P + + N F G Q DA E LR ++DLLHEEL+ PV
Sbjct: 151 RGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGNLARTDKKPA-ICRSYYKLMTELWHKS---------RPGAVVPTNLFQGIKTVNPAFRGYSQQDAQEFLRCLMDLLHEELKEPV 260
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=2 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7FX78_PELSI) HSP 1 Score: 80.9 bits (198), Expect = 2.690e-13 Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 526 LGVKGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 894
L +G+ GLKN GN+CY+NA+LQAL+ C P ++C +P + S +L TE+W R + P + + N F G Q DA E LR ++DLLHEEL+ PV
Sbjct: 148 LKTRGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGALARTDKKPA-ICKSYLKLMTELWHKS---------RPGSVVPTNLFQGIKTINPMFRGYSQQDAQEFLRCLMDLLHEELKEPV 260
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=7 Tax=Galeoidea TaxID=119195 RepID=A0A401P8A0_SCYTO) HSP 1 Score: 80.9 bits (198), Expect = 2.790e-13 Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1
Query: 535 KGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPVS 897
+G+ G+KN GNSCY+NA+LQAL+ C P +ECV +P L S +L +E+W KR + P + + N F G Q D E LR ++D LHEEL+ P+S
Sbjct: 281 RGLTGMKNIGNSCYMNAALQALSNCPPLTQFFLECVGLVRTDKKPA-LCKSYQKLISELWHK---------KRPSYVVPTSLAHGIKLINPMFRGYAQQDTQEFLRCLMDQLHEELKEPLS 391
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=8 Tax=Crocodylia TaxID=1294634 RepID=A0A1U8D9T3_ALLSI) HSP 1 Score: 80.5 bits (197), Expect = 3.590e-13 Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 526 LGVKGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 894
L +G+ GLKN GN+CY+NA+LQAL+ C P ++C +P + S +L TE+W R + P + + N F G Q DA E LR ++DLLHEEL+ PV
Sbjct: 147 LRTRGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGALARTDKKPA-ICKSYLKLMTELWHKS---------RPGSIVPTNLFQGIKTVNPTFRGYSQQDAQEFLRCLMDLLHEELKEPV 259
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=7 Tax=Crocodylia TaxID=1294634 RepID=A0A7M4G273_CROPO) HSP 1 Score: 80.5 bits (197), Expect = 3.630e-13 Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 526 LGVKGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNVAGRPCPLAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 894
L +G+ GLKN GN+CY+NA+LQAL+ C P ++C +P + S +L TE+W R + P + + N F G Q DA E LR ++DLLHEEL+ PV
Sbjct: 147 LRTRGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGALARTDKKPA-ICKSYLKLMTELWHKS---------RPGSIVPTNLFQGIKTVNPTFRGYSQQDAQEFLRCLMDLLHEELKEPV 259
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Match: ubiquitin (carboxyl-terminal hydrolase 20 isoform X1 n=4 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200EAE08) HSP 1 Score: 80.5 bits (197), Expect = 3.690e-13 Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 535 KGMMGLKNEGNSCYLNASLQALARCAPFRAHLVECVPTPNV-AGRPCP-LAYSMSELYTEMWADDTAGGGSGGKRRAAETPAKVLGALVKGNRWFAGNGQHDAHEALRSILDLLHEELRRPV 894
+G++GL+N GN+CY+NA+LQAL+ APF ++ +EC V AG P LA + +L EMW T R P ++ + + F G QHD E LR +D LHEEL+ PV
Sbjct: 134 RGLVGLQNMGNTCYMNAALQALSNTAPFTSYFLECAAAVTVLAGDKKPGLARAYQKLVKEMWIMKT---------RGYIVPNGIIYGIRNVHPMFRGYQQHDTQEFLRCFMDQLHEELKEPV 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7743.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7743.1.1 >prot_H-canaliculatus_M_contigs7743.1.1 ID=prot_H-canaliculatus_M_contigs7743.1.1|Name=mRNA_H-canaliculatus_M_contigs7743.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=299bp MPGSTRGNGRRQRPRTAPDVSLSPVERGYTTAANGRSRDAAGGGRLPAVRback to top mRNA from alignment at H-canaliculatus_M_contigs7743:2529..4900+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7743.1.1 ID=mRNA_H-canaliculatus_M_contigs7743.1.1|Name=mRNA_H-canaliculatus_M_contigs7743.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2372bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7743:2529..4900+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7743:2529..4900+ >mRNA_H-canaliculatus_M_contigs7743.1.1 ID=mRNA_H-canaliculatus_M_contigs7743.1.1|Name=mRNA_H-canaliculatus_M_contigs7743.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=897bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7743:2529..4900+ (Hapterophycus canaliculatus Oshoro7m male)back to top |