mRNA_H-canaliculatus_M_contigs77421.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77421.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77421.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.250e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG 129
            QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG
Sbjct:  578 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG 614
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.250e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG 129
            QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG
Sbjct:  557 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG 593
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Putative (pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.520e-15
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG 129
            QLIDNMPKDLNRPWEDPMPDAGERLFT ELRG+++ G
Sbjct:  606 QLIDNMPKDLNRPWEDPMPDAGERLFTQELRGLNLGG 642
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAC0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-11
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG 129
            QLID++PKDLNRPWEDPMPD GER F  ELRGI++ G
Sbjct:   71 QLIDSIPKDLNRPWEDPMPDVGERHFAQELRGINLGG 107
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZD7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.340e-11
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG 129
            QLID++PKDLNRPWEDPMP++GER F  ELRGI++ G
Sbjct:  140 QLIDSIPKDLNRPWEDPMPESGERHFAQELRGINLGG 176
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WY11_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.090e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISV 123
            QLID++PKDLNRPWEDPMPDAGER F  ELRGI++
Sbjct:  464 QLIDSIPKDLNRPWEDPMPDAGERHFAQELRGINM 498
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3A8_HYAAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.090e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISV 123
            QLID++PKDLNRPWEDPMPDAGER F  ELRGI++
Sbjct:  460 QLIDSIPKDLNRPWEDPMPDAGERHFAQELRGINM 494
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Atp-dependent (helicase n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1A926_PLAHL)

HSP 1 Score: 65.9 bits (159), Expect = 2.090e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISV 123
            QLID++PKDLNRPWEDPMPDAGER F  ELRGI++
Sbjct:  457 QLIDSIPKDLNRPWEDPMPDAGERHFAQELRGINM 491
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1R4_BRELC)

HSP 1 Score: 65.9 bits (159), Expect = 2.090e-11
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVS 126
            QLID++PKDLNRPWEDPMP+AGER F  ELRGI++S
Sbjct:  435 QLIDSIPKDLNRPWEDPMPEAGERHFAQELRGINMS 470
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BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7WIX0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.100e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   19 QLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISV 123
            QLID++PKDLNRPWEDPMPDAGER F  ELRGI++
Sbjct:  223 QLIDSIPKDLNRPWEDPMPDAGERHFAQELRGINM 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77421.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.250e-17100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.250e-17100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Putative8.520e-1586.49pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
Hypothetical1.120e-1175.68protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Hypothetical1.340e-1172.97protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Uncharacterized2.090e-1180.00protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized2.090e-1180.00protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Atp-dependent2.090e-1180.00helicase n=2 Tax=Peronosporaceae TaxID=4777 RepID=... [more]
Uncharacterized2.090e-1177.78protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Uncharacterized2.100e-1180.00protein n=2 Tax=Peronospora effusa TaxID=542832 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77421contigH-canaliculatus_M_contigs77421:282..413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LN25
Preferred nameDHX8
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,S1
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K12818
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000350,GO:0000375,GO:0000377,GO:0000390,GO:0000393,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006139,GO:0006325,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009653,GO:0009790,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032988,GO:0032991,GO:0034622,GO:0034641,GO:0040007,GO:0040021,GO:0040022,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048468,GO:0048477,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051704,GO:0055044,GO:0065003,GO:0070013,GO:0070035,GO:0071007,GO:0071013,GO:0071014,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons1
Evalue6.97e-18
EggNOG OGsCOG1643@1|root,KOG0922@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size132
COG categoryL
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.6825812-CDS-H-canaliculatus_M_contigs77421:281..4131696854111.6825812-CDS-H-canaliculatus_M_contigs77421:281..413Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77421 282..413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77421.1.1prot_H-canaliculatus_M_contigs77421.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77421 282..413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77421.1.1

>prot_H-canaliculatus_M_contigs77421.1.1 ID=prot_H-canaliculatus_M_contigs77421.1.1|Name=mRNA_H-canaliculatus_M_contigs77421.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=44bp
RERRPKQLIDNMPKDLNRPWEDPMPDAGERLFTMELRGISVSG*
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mRNA from alignment at H-canaliculatus_M_contigs77421:282..413-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77421.1.1 ID=mRNA_H-canaliculatus_M_contigs77421.1.1|Name=mRNA_H-canaliculatus_M_contigs77421.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77421:282..413- (Hapterophycus canaliculatus Oshoro7m male)
CGCGAACGTCGCCCGAAACAGTTGATCGACAACATGCCCAAGGATCTGAA
CAGGCCCTGGGAGGACCCCATGCCCGATGCCGGGGAGCGACTTTTCACGA
TGGAGCTCAGGGGCATCAGCGTCTCCGGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77421:282..413-

>mRNA_H-canaliculatus_M_contigs77421.1.1 ID=mRNA_H-canaliculatus_M_contigs77421.1.1|Name=mRNA_H-canaliculatus_M_contigs77421.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77421:282..413- (Hapterophycus canaliculatus Oshoro7m male)
CGCGAACGTCGCCCGAAACAGTTGATCGACAACATGCCCAAGGATCTGAA
CAGGCCCTGGGAGGACCCCATGCCCGATGCCGGGGAGCGACTTTTCACGA
TGGAGCTCAGGGGCATCAGCGTCTCCGGGTGA
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