mRNA_H-canaliculatus_M_contigs7738.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7738.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7738.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Myosin (29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 3.550e-59
Identity = 119/166 (71.69%), Postives = 127/166 (76.51%), Query Frame = 1
Query:    1 MIEAGEPQLAPHLFGVADHAYSEL-----------------RKARASNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQVR 447
            M+EAGE  LAPHLFGVADHAYSEL                 RKARASNQSIIISGESGSGKTEATKIIMQYLARITS       G G++        SD  RDSRAAS AIM++VGDLE+RVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRI GAQ++
Sbjct:  184 MVEAGE--LAPHLFGVADHAYSELVKGHLEAESETKEDVRARKARASNQSIIISGESGSGKTEATKIIMQYLARITSGEAVGASGAGEA--------SDACRDSRAASEAIMLHVGDLESRVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRIRGAQIQ 339          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ5_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 3.000e-58
Identity = 123/166 (74.10%), Postives = 131/166 (78.92%), Query Frame = 1
Query:    1 MIEAGEPQLAPHLFGVADHAYSEL-----------------RKARASNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQVR 447
            M+EAGE  LAPHLFGVADHAYSEL                 RKARASNQSIIISGESGSGKTEATKIIMQYLARITS  GE+I   G S A +    SD  RDSRAAS AIM++VGDLE+RVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRI GAQ++
Sbjct:   27 MVEAGE--LAPHLFGVADHAYSELVKGHLEAESETKKDVRARKARASNQSIIISGESGSGKTEATKIIMQYLARITS--GEAI---GASDAGEV---SDACRDSRAASEAIMLHVGDLESRVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRIRGAQIQ 182          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Myosin (motor domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WCJ1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.870e-38
Identity = 85/143 (59.44%), Postives = 99/143 (69.23%), Query Frame = 1
Query:   25 LAPHLFGVADHAYSELRKARA---SNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQV 444
            L PH+F +ADHAY++L +  A   +NQSIIISGESGSGKTE TKIIMQYLAR TS              RKTP  ++   D  A S A+   +G LE RVL  NPLLESFGNA TL+NDNSSRFGKFI+IQFD  G+I GAQ+
Sbjct:  100 LPPHVFALADHAYTQLIQGGALDPANQSIIISGESGSGKTETTKIIMQYLARATSY-------------RKTPQDAEEFLD--ATSGAVSHALGKLEERVLESNPLLESFGNAKTLRNDNSSRFGKFIEIQFDHHGKIVGAQI 227          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Myosin-like (protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPP3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.040e-35
Identity = 77/143 (53.85%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   25 LAPHLFGVADHAYSELRKARA---SNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQV 444
            L PH+F +ADHAY++L +  A   +NQSIIISGESGSGKTE TKIIMQYLAR TS   E                     +     + +   +G LE RVL  NPLLESFGNA TL+NDNSSRFGKFI+IQF+  G+I GAQ+
Sbjct:   98 LPPHVFALADHAYTQLIQGGALDPANQSIIISGESGSGKTETTKIIMQYLARATSYRKE---------------------EGSVVDTTMSGALGKLEERVLESNPLLESFGNAKTLRNDNSSRFGKFIEIQFNHHGKIVGAQI 219          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Myosin (29 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AV11_PLAHL)

HSP 1 Score: 137 bits (345), Expect = 1.510e-34
Identity = 84/143 (58.74%), Postives = 100/143 (69.93%), Query Frame = 1
Query:   25 LAPHLFGVADHAYSELRKARA---SNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQV 444
            L PH+F +ADHAY++L +  A   +NQSIIISGESGSGKTE TKIIMQYLAR TS        EG++ A   P+P D        +SA+    G LE RVL  NPLLESFGNA TL+NDNSSRFGKFI+IQF+  G+I GAQ+
Sbjct:   97 LPPHVFALADHAYTQLIQGGALDPANQSIIISGESGSGKTETTKIIMQYLARATSYRKGP---EGENAA---PVPLD------GMASAL----GKLEERVLESNPLLESFGNAKTLRNDNSSRFGKFIEIQFNHHGKIVGAQI 223          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB97_BRELC)

HSP 1 Score: 137 bits (344), Expect = 2.060e-34
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1
Query:   25 LAPHLFGVADHAYSELRKARA---SNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQV 444
            L PH+F +ADHAY++L +  A   +NQSIIISGESGSGKTE TKIIMQYLAR TS   +    +GD L             S+     + + +G LE RVL  NPLLESFGNA TL+NDNSSRFGKFI+IQF+  G+I GAQ+
Sbjct:   97 LPPHVFALADHAYTQLIQGGALDPANQSIIISGESGSGKTETTKIIMQYLARATS---DRKGPDGDVL-------------SQVVQDGMSMALGKLEERVLDSNPLLESFGNAKTLRNDNSSRFGKFIEIQFNHHGKIVGAQI 223          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8F4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.210e-34
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1
Query:   25 LAPHLFGVADHAYSELRKARA---SNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQV 444
            L PH+F +ADHAY++L +  A   +NQSIIISGESG+GKTE TKIIMQYLAR TS       GE  ++   T         S   ++ I   +G LE RVL  NPLLESFGNA TL+NDNSSRFGKFI+IQF+  G+I GAQ+
Sbjct:   99 LPPHVFALADHAYTQLIQGGALDPANQSIIISGESGAGKTETTKIIMQYLARATSYRKPD--GETSAIHEATSXXXXXXXXSNP-NTIISGALGKLEERVLDSNPLLESFGNAKTLRNDNSSRFGKFIEIQFNHHGKIVGAQI 238          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV92_GLOUD)

HSP 1 Score: 135 bits (340), Expect = 6.660e-34
Identity = 81/145 (55.86%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   25 LAPHLFGVADHAYSELRKARA---SNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRA--ASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQV 444
            L PH+F +ADHAY++L +  A   +NQSIIISGESG+GKTE TKIIMQYLAR TS              RK P   D      A  A+  +   +G LE RVL  NPLLESFGNA TL+NDNSSRFGKFI+IQFD  G+I GA++
Sbjct:  105 LPPHVFALADHAYTQLIQGGALDPANQSIIISGESGAGKTETTKIIMQYLARATSY-------------RKHPNE-DAAHHVAANPANGTVSRTLGKLEERVLESNPLLESFGNAKTLRNDNSSRFGKFIEIQFDHHGKIVGAEI 235          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D2Q4_PHYNI)

HSP 1 Score: 135 bits (340), Expect = 6.880e-34
Identity = 83/143 (58.04%), Postives = 98/143 (68.53%), Query Frame = 1
Query:   25 LAPHLFGVADHAYSELRKARA---SNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQV 444
            L PH+F +ADHAY++L +  A   +NQSIIISGESGSGKTE TKIIMQYLAR TS   +   GEG       P P+ +   S A        +G LE RVL  NPLLESFGNA TL+NDNSSRFGKFI+IQF+  G+I GAQ+
Sbjct:   97 LPPHVFALADHAYTQLIQGGALDPANQSIIISGESGSGKTETTKIIMQYLARATSYR-KGPEGEG-------PPPAPLEGMSGA--------LGKLEERVLESNPLLESFGNAKTLRNDNSSRFGKFIEIQFNHHGKIVGAQI 223          
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS47_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 7.100e-34
Identity = 80/143 (55.94%), Postives = 95/143 (66.43%), Query Frame = 1
Query:   25 LAPHLFGVADHAYSELRKARA---SNQSIIISGESGSGKTEATKIIMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGDLEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQV 444
            L PH+F +ADHAY++L +  A   +NQSIIISGESG+GKTE TKIIMQYLAR TS  G    G               G++  A  S  +   G LE RVL  NPLLESFGNA TL+NDNSSRFGKFI+IQFD  G+I GA++
Sbjct:  106 LPPHVFALADHAYTQLIQGGALDPANQSIIISGESGAGKTETTKIIMQYLARATSYHGHVQNG---------------GQNPTAGVSRAL---GKLEERVLETNPLLESFGNAKTLRNDNSSRFGKFIEIQFDHHGKIVGAEI 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7738.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Myosin3.550e-5971.6929 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID... [more]
Myosin3.000e-5874.10motor domain-containing protein n=1 Tax=Ectocarpus... [more]
Myosin7.870e-3859.44motor domain-containing protein (Fragment) n=2 Tax... [more]
Myosin-like1.040e-3553.85protein (Fragment) n=1 Tax=Phytophthora palmivora ... [more]
Myosin1.510e-3458.7429 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A... [more]
Uncharacterized2.060e-3455.94protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Uncharacterized5.210e-3455.94protein n=2 Tax=Peronospora effusa TaxID=542832 Re... [more]
Uncharacterized6.660e-3455.86protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized6.880e-3458.04protein n=1 Tax=Phytophthora nicotianae TaxID=4790... [more]
Uncharacterized7.100e-3455.94protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7738contigH-canaliculatus_M_contigs7738:3288..4615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size468
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.81e-60
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size468
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.147074-CDS-H-canaliculatus_M_contigs7738:3287..33591696854111.147074-CDS-H-canaliculatus_M_contigs7738:3287..3359Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7738 3288..3359 +
1696854111.1658876-CDS-H-canaliculatus_M_contigs7738:3797..39281696854111.1658876-CDS-H-canaliculatus_M_contigs7738:3797..3928Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7738 3798..3928 +
1696854111.1823664-CDS-H-canaliculatus_M_contigs7738:4350..46151696854111.1823664-CDS-H-canaliculatus_M_contigs7738:4350..4615Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7738 4351..4615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7738.1.1prot_H-canaliculatus_M_contigs7738.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7738 3288..4615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7738.1.1

>prot_H-canaliculatus_M_contigs7738.1.1 ID=prot_H-canaliculatus_M_contigs7738.1.1|Name=mRNA_H-canaliculatus_M_contigs7738.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=156bp
MIEAGEPQLAPHLFGVADHAYSELRKARASNQSIIISGESGSGKTEATKI
IMQYLARITSASGESILGEGDSLARKTPLPSDVGRDSRAASSAIMVNVGD
LEARVLSCNPLLESFGNAVTLKNDNSSRFGKFIKIQFDKKGRICGAQVRA
DCWGA*
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mRNA from alignment at H-canaliculatus_M_contigs7738:3288..4615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7738.1.1 ID=mRNA_H-canaliculatus_M_contigs7738.1.1|Name=mRNA_H-canaliculatus_M_contigs7738.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1328bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7738:3288..4615+ (Hapterophycus canaliculatus Oshoro7m male)
ATGATCGAGGCTGGGGAACCACAACTGGCGCCGCACCTGTTTGGAGTGGC TGACCATGCCTACTCAGAGCTGGTGGGTGAACAAGCTCCAGTATCTCAGC GGCGATCGTGTGCATCGTCCTCGTTTTGAAGATAAAGAGTGGAGCATGGA CCATGCGGACGGTGCCAAGGGGGTTGAAAGGGTGTCATGTGGAGTTTCGT TGGTTTGGCGCCGCCGGCTGGACAGGCAGATCCGTTTTGCTGCCGGCTTG GGTCTTGCGTACGTCCTTTGATATATCGCGACATGTCAATCCGGTGGCCC ATTGCCCCGCCCACACCCACCCACACACTACCACTGGCCGTCCAGCCTAG CACACGGACCCCGTCTACGACGTGGCGAACACTTTCCAAGAACGAATCCA AAACAACGCTGCGTGGGCGGTGTATCGTATGGATTTGTGTACATGTTGTA TACGTCTAGGTTAAGGGGCACTTGGAAGCCGAATCCGAGTCGAAAGAGGA CGTCCGAAAGAGGAAGGCCAGAGCGTCCAACCAGTCCATCATCATCAGCG GGGAGAGCGGGTCGGGAAAGACCGAGGCCACGAAAATCATAATGCAGTAC CTCGCCAGGATTACGTCAGCCTCTGGAGAGTCCATCTTGGGGTGAGGGCT GTCGCCGTTGCGACTAGGGATGTTGTTGTTCATGCTGTCGCTGTTCCGCT TGTGTCGCCCGTTGCTGTTTTTGTTGTTGTTGCCGATGCCGTTGCTCTTG CTGTAGCTCTCGTCGCAGATACTTTGAGGCCTTGAGTTGGGGAGGGGACG GAATGGTGTCATTTTGATTACGTACCGATCCGTCTTGAGTCGTAAAAGCT CCTTCAGCCTGTGGTCTACCCGTCAACGGTCGACCACACTGCATATCGGA GCTCCTTCAACTCGGGGTCTACCTCTCAACGGTCGAACACACTGCGTGTC AACACCTCAGCGTTTCGCGACACGAAACATTTCGCAACACAACTTTGAAC ATATCAACGTTTCGTTTCATCGTTTCTCAACCGGATGGCGGCCGGTCCCA TTCCGTCACGCAGCGAGGGCGACAGCTTGGCTCGCAAGACGCCCCTGCCC TCGGACGTCGGGAGAGATTCAAGGGCAGCCAGCAGCGCCATCATGGTGAA CGTCGGGGACCTTGAGGCGAGGGTGCTGAGCTGTAACCCTCTGCTGGAGA GCTTCGGGAACGCCGTGACGCTGAAGAACGACAATTCTTCCCGGTTCGGA AAGTTTATCAAGATTCAGTTCGACAAGAAGGGGAGGATCTGCGGGGCGCA GGTACGTGCGGATTGTTGGGGAGCGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7738:3288..4615+

>mRNA_H-canaliculatus_M_contigs7738.1.1 ID=mRNA_H-canaliculatus_M_contigs7738.1.1|Name=mRNA_H-canaliculatus_M_contigs7738.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7738:3288..4615+ (Hapterophycus canaliculatus Oshoro7m male)
ATGATCGAGGCTGGGGAACCACAACTGGCGCCGCACCTGTTTGGAGTGGC
TGACCATGCCTACTCAGAGCTGAGGAAGGCCAGAGCGTCCAACCAGTCCA
TCATCATCAGCGGGGAGAGCGGGTCGGGAAAGACCGAGGCCACGAAAATC
ATAATGCAGTACCTCGCCAGGATTACGTCAGCCTCTGGAGAGTCCATCTT
GGGCGAGGGCGACAGCTTGGCTCGCAAGACGCCCCTGCCCTCGGACGTCG
GGAGAGATTCAAGGGCAGCCAGCAGCGCCATCATGGTGAACGTCGGGGAC
CTTGAGGCGAGGGTGCTGAGCTGTAACCCTCTGCTGGAGAGCTTCGGGAA
CGCCGTGACGCTGAAGAACGACAATTCTTCCCGGTTCGGAAAGTTTATCA
AGATTCAGTTCGACAAGAAGGGGAGGATCTGCGGGGCGCAGGTACGTGCG
GATTGTTGGGGAGCGTAG
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