mRNA_H-canaliculatus_M_contigs7712.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7712.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7712.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7712.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB1_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 1.020e-81
Identity = 124/160 (77.50%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:   31 QCSSLAAFPSYNVVLGFWGLYSVFSRSVQATQVYLGLLCFSILLDIIFCSIWGNNDADIFDGSTTTFCLVMLIFNMLAKVAAVYCFFRFYKEMEAGVINSSHELSVANAKEGGRQVAGGRGAYDMAPMSTRKEKGPIDSPEASIFSAGSAASFALSPKGR 510
            Q SSLAAFPSYNVVLG WGLYSV+++S+Q+TQVYLGLLCFSILLDIIFCSIWG+NDA IFDGST +FCLVMLI NMLAK+AAVYCF RFYKEME+G I     L  A AK+GGRQ AGGRGAYDMAPMST +E+ P+ SP+AS+ S+GSAASFALSPKGR
Sbjct:   38 QASSLAAFPSYNVVLGLWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGSNDAGIFDGSTASFCLVMLILNMLAKLAAVYCFLRFYKEMESGAIRPQERLG-APAKQGGRQSAGGRGAYDMAPMSTHEERAPVGSPDASLMSSGSAASFALSPKGR 196
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BLAST of mRNA_H-canaliculatus_M_contigs7712.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.550e-28
Identity = 63/135 (46.67%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:   31 QCSSLAAFPSYNVVLGFWGLYSVFSRSVQATQVYLGLLCFSILLDIIFCSIWGNNDADIFDGSTTTFCLVMLIFNMLAKVAAVYCFFRFYKEMEAGVINSSHELSVANAKEGGRQVAGGRGAYDMAPMSTRKEKG 435
            Q    A+FPSYNVVLGFWGLY  F+RS QA   YL  L  SILLDII+CS+WG+N A +FDG T  FCLVMLIFNM  K  ++     ++K++        H+  VA   +   + A  R + ++A    RKE G
Sbjct:   38 QLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLL----YFKQL--------HKTLVAELTDRALRPANRRASINLALKQARKEGG 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7712.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.020e-8177.50protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.550e-2846.67protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7712contigH-canaliculatus_M_contigs7712:2385..4343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size519
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004850.1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.0248904-CDS-H-canaliculatus_M_contigs7712:2384..24491696854109.0248904-CDS-H-canaliculatus_M_contigs7712:2384..2449Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7712 2385..2449 -
1696854109.0395312-CDS-H-canaliculatus_M_contigs7712:3050..33171696854109.0395312-CDS-H-canaliculatus_M_contigs7712:3050..3317Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7712 3051..3317 -
1696854109.0515912-CDS-H-canaliculatus_M_contigs7712:3804..38631696854109.0515912-CDS-H-canaliculatus_M_contigs7712:3804..3863Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7712 3805..3863 -
1696854109.0625618-CDS-H-canaliculatus_M_contigs7712:4215..43431696854109.0625618-CDS-H-canaliculatus_M_contigs7712:4215..4343Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7712 4216..4343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7712.1.1prot_H-canaliculatus_M_contigs7712.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7712 2385..4343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7712.1.1

>prot_H-canaliculatus_M_contigs7712.1.1 ID=prot_H-canaliculatus_M_contigs7712.1.1|Name=mRNA_H-canaliculatus_M_contigs7712.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=173bp
MTSSLHHAPLQCSSLAAFPSYNVVLGFWGLYSVFSRSVQATQVYLGLLCF
SILLDIIFCSIWGNNDADIFDGSTTTFCLVMLIFNMLAKVAAVYCFFRFY
KEMEAGVINSSHELSVANAKEGGRQVAGGRGAYDMAPMSTRKEKGPIDSP
EASIFSAGSAASFALSPKGRDG*
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mRNA from alignment at H-canaliculatus_M_contigs7712:2385..4343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7712.1.1 ID=mRNA_H-canaliculatus_M_contigs7712.1.1|Name=mRNA_H-canaliculatus_M_contigs7712.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1959bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7712:2385..4343- (Hapterophycus canaliculatus Oshoro7m male)
ATGACCTCCTCTCTCCACCACGCACCGCTCCAATGCAGCTCGTTGGCAGC
ATTCCCGTCGTACAACGTGGTGCTGGGGTTCTGGGGATTGTACAGCGTGT
TCTCCAGGAGCGTGCAAGCTACGCAAGTGTGAGTTTTGTCGGTGTTTGCA
GACCTTTTGAATGAGTGCTGAAATACCGACTGTGCCGAGTGGCGAATCGT
TTGTGGTAAACGCGAGCCACCACTCTCTGGTGCAATCTTGTTGTGGCTCT
TTCCACCAGAAAATACGGCGCAGATAAGGAGTTGATCCAGGTACGTGCGT
GGGCGTCGTACTTGTCTGTATCATATACAACCTACCACCAGTGTTCTCGC
GACAAGAACTCGAGTTGATGGCACTGAGGAGTCGCAGAGAATCCCGGCTT
GTCTTCACAGTTGACCGAGGCATTTAGGTGCGGCCAATACACGCGCTACG
ACCGCCGCTTCGTGCCCGCCCGTCACGCAGGTATTTGGGCTTGCTTTGCT
TCTCCATCCTGCTCGACATCATCTTCTGTTCCATTTGGGGTGAGTTTTTC
AAAATAAGTGTGCTTTTGGTTGACCGATGAATGCTGAGACGTCTTTGTAG
TACAACATAAATGGTGTCGTATGACCTGGAAAAAATTAGCAGTGCTTCTG
GTCATCCCAGACTATCTGGATGGGAGATGTTGATCGGGAAGATTACTAAT
AATATTCTCATTCGACTGTTTGTGTCTCAGATCAGAGGGAAGTACCGAGC
TGAGCTATCCTCGCCGGTGAATTGAGTTATCTCTTTCGACTTCGTTTGTT
CAGAAGCGCCTTTACACTCGACCAAGACAGACACGTGCTTACCGGGCTAA
GCTGCTCGGGCACGCGACTTTTCCTCATGTCGTTTTTATCATACCCTGGC
GACCCCTCCCTCTGCCTATCGGTTTACTACATCTCTGACCCTGACCCTGA
CTCTGGTCCTGACCCTAGTCCTTGCTCTGACCCTGTCCCTGTCCTAACCC
CCGTCTGTATTTCTGCCCCTGCACAGGAAACAACGACGCAGACATTTTCG
ATGGGTCGACGACGACCTTTTGCCTCGTTATGCTTATTTTCAACATGCTG
GCCAAGGTTGCGGCGGTCTACTGTTTTTTTAGATTCTACAAGGAGATGGA
GGCTGGAGTAATCAACTCTTCCCATGAACTTTCCGTTGCCAATGCCAAGG
AAGGAGGACGCCAGGTGGCTGGGGGGCGAGGTGCTTACGACATGGCACCG
ATGTCCACCCGCAAAGAAAAGGGTCCGATTGATTCTCCCGAAGGTGAGCG
CAAGTCTAGTTCTTGAGCAAGAGTCACCTTTCGGTGGTTCCGCGGGAACT
TGTGGTCCATGTAGCACGAAGAACGCATTACTTCGGAGCCTGCAATGAAA
GGAAGCATTGAGGAGAACCTTGCCGTATAGGGCATGCGAAACGATCCGAA
CTTGGTTTCAGTAGCTTCTCGAACTCATATAACTCAAGCTCGGCAATACG
TTCGTCCCTACACCGCATGGGAGAAAACTTCTGTTCACCCTCACAAACGA
CCCAAATGTTGTTATGCCTTATCGGAGCATTCATTCTCTGCAATATGGAA
GTCTTTTTTCTCTGCAATATACTTGTACTTGTTAAGCCTTAAGACCGATC
AAACATGTGTGATCCAAGCTCGTTCCTGCGGCATTTTGTTATCGAATGTC
GATGACGCATCGTGACGGGTAATCAAAACGAGTGTAAAGTGCATGCGTGT
GAAAGGCCGGACAAATAGCTGCATGTATGGATTGCCCTAGAAGCCCGATC
CACGTCCTCCTTTGTGCGGCAAGTGAAAAAATCTCCATGATTGAACTATT
TTAACATCTGCTTCCATCAACGATGACTGACTGATCGTTCGCAGCGAGTA
TCTTCAGCGCTGGAAGCGCAGCTTCATTCGCGCTTTCCCCCAAGGGGAGA
GATGGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7712:2385..4343-

>mRNA_H-canaliculatus_M_contigs7712.1.1 ID=mRNA_H-canaliculatus_M_contigs7712.1.1|Name=mRNA_H-canaliculatus_M_contigs7712.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7712:2385..4343- (Hapterophycus canaliculatus Oshoro7m male)
ATGACCTCCTCTCTCCACCACGCACCGCTCCAATGCAGCTCGTTGGCAGC
ATTCCCGTCGTACAACGTGGTGCTGGGGTTCTGGGGATTGTACAGCGTGT
TCTCCAGGAGCGTGCAAGCTACGCAAGTGTATTTGGGCTTGCTTTGCTTC
TCCATCCTGCTCGACATCATCTTCTGTTCCATTTGGGGAAACAACGACGC
AGACATTTTCGATGGGTCGACGACGACCTTTTGCCTCGTTATGCTTATTT
TCAACATGCTGGCCAAGGTTGCGGCGGTCTACTGTTTTTTTAGATTCTAC
AAGGAGATGGAGGCTGGAGTAATCAACTCTTCCCATGAACTTTCCGTTGC
CAATGCCAAGGAAGGAGGACGCCAGGTGGCTGGGGGGCGAGGTGCTTACG
ACATGGCACCGATGTCCACCCGCAAAGAAAAGGGTCCGATTGATTCTCCC
GAAGCGAGTATCTTCAGCGCTGGAAGCGCAGCTTCATTCGCGCTTTCCCC
CAAGGGGAGAGATGGCTGA
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