mRNA_H-canaliculatus_M_contigs76651.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76651.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76651.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76651.1.1 vs.
Match: cAMP-dependent (protein kinase regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ9_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.150e-15
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 MIATRARCQEALSFLNYVKRVLAEKGENAAAVA---AAGYGWDWVEDNCR 141
            MIA RARCQEALSFL YV+RVL EKGE+AAA     AAG+GWDWVE+NCR
Sbjct:    1 MIAMRARCQEALSFLRYVRRVLEEKGEDAAAXXXXXAAGHGWDWVEENCR 50
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BLAST of mRNA_H-canaliculatus_M_contigs76651.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 MIATRARCQEALSFLNYVKRVLAEKGENAAAVAA---AGYGWDWVEDNCR 141
            MIA RARC EAL FL YV++VL EKGE+AA       AG+GWDWVE+NCR
Sbjct:    1 MIARRARCLEALRFLRYVRKVLEEKGEDAAXXXXXXXAGHGWDWVEENCR 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76651.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
cAMP-dependent1.150e-1576.00protein kinase regulatory subunit n=1 Tax=Ectocarp... [more]
Uncharacterized2.820e-1266.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76651contigH-canaliculatus_M_contigs76651:332..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.9643948-CDS-H-canaliculatus_M_contigs76651:331..4751696854104.9643948-CDS-H-canaliculatus_M_contigs76651:331..475Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76651 332..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76651.1.1prot_H-canaliculatus_M_contigs76651.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76651 332..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76651.1.1

>prot_H-canaliculatus_M_contigs76651.1.1 ID=prot_H-canaliculatus_M_contigs76651.1.1|Name=mRNA_H-canaliculatus_M_contigs76651.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=48bp
MIATRARCQEALSFLNYVKRVLAEKGENAAAVAAAGYGWDWVEDNCR*
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mRNA from alignment at H-canaliculatus_M_contigs76651:332..475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76651.1.1 ID=mRNA_H-canaliculatus_M_contigs76651.1.1|Name=mRNA_H-canaliculatus_M_contigs76651.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76651:332..475- (Hapterophycus canaliculatus Oshoro7m male)
ATGATCGCTACGAGAGCGCGCTGTCAAGAAGCGCTGAGCTTTCTGAACTA
CGTCAAGAGGGTACTCGCCGAGAAGGGAGAAAACGCGGCTGCTGTAGCCG
CCGCGGGGTACGGGTGGGACTGGGTGGAGGACAACTGCAGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76651:332..475-

>mRNA_H-canaliculatus_M_contigs76651.1.1 ID=mRNA_H-canaliculatus_M_contigs76651.1.1|Name=mRNA_H-canaliculatus_M_contigs76651.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76651:332..475- (Hapterophycus canaliculatus Oshoro7m male)
ATGATCGCTACGAGAGCGCGCTGTCAAGAAGCGCTGAGCTTTCTGAACTA
CGTCAAGAGGGTACTCGCCGAGAAGGGAGAAAACGCGGCTGCTGTAGCCG
CCGCGGGGTACGGGTGGGACTGGGTGGAGGACAACTGCAGGTAG
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