mRNA_H-canaliculatus_M_contigs766.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs766.1.1
Unique NamemRNA_H-canaliculatus_M_contigs766.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs766.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ60_ECTSI)

HSP 1 Score: 516 bits (1328), Expect = 2.070e-180
Identity = 278/314 (88.54%), Postives = 290/314 (92.36%), Query Frame = 1 
Query:   46 VMDPRQMVEQEEVGLDVGIEPGAGLGGYPGMDGDLRIISREIYQGKTFDDWDDMEANVRRLARKAGFKVVKDSKGEKRADGRQKRIVWKCDCAGIKTPRKGPKELS-PLPSRERPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRLTGPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXXXXXXVVASLPSSRVNDPIFRDSMTIIGNALRQALESGADAPGLKRRCEGFAEGLRKTTVAATDNTDPSRKRMRVDAGGP 984
            VM+ R + E EE GLDVGIEPGAGLG YPG+DG++RIISREIYQGKTFDDWDDME NVRRLARKAGFK   DSKGEKRADGRQKRIVWKCDCAG+KTPRKG K+L+    SRERPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRL GPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXX    VV SLPSSR+NDP+FR+SMTIIGNALRQALESGADA GLKRRCEGFAEGLRKTTVAATDNTDPSRKR+RVD G P
Sbjct:   60 VMEQRHVAEPEEPGLDVGIEPGAGLG-YPGLDGEMRIISREIYQGKTFDDWDDMEGNVRRLARKAGFK---DSKGEKRADGRQKRIVWKCDCAGMKTPRKGQKDLTHDQTSRERPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRLAGPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXXSPGSVVGSLPSSRINDPVFRESMTIIGNALRQALESGADAAGLKRRCEGFAEGLRKTTVAATDNTDPSRKRIRVDGGSP 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs766.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.070e-18088.54protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ60... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs766contigH-canaliculatus_M_contigs766:311..4576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog588596.U9TQY9
Model size1020
Max annot lvl588596.U9TQY9|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.13e-05
EggNOG OGs2EW2G@1|root,2SXYP@2759|Eukaryota
Ec32 ortholog descriptionFAR1 DNA binding domain
Ec32 orthologEc-02_004880.1
DescriptionFAR1 DNA-binding domain
Cds size1020
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.2667627-CDS-H-canaliculatus_M_contigs766:310..5681696854104.2667627-CDS-H-canaliculatus_M_contigs766:310..568Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs766 311..568 +
1696854104.2783608-CDS-H-canaliculatus_M_contigs766:1885..20411696854104.2783608-CDS-H-canaliculatus_M_contigs766:1885..2041Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs766 1886..2041 +
1696854104.2900388-CDS-H-canaliculatus_M_contigs766:3680..38691696854104.2900388-CDS-H-canaliculatus_M_contigs766:3680..3869Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs766 3681..3869 +
1696854104.301102-CDS-H-canaliculatus_M_contigs766:4159..45761696854104.301102-CDS-H-canaliculatus_M_contigs766:4159..4576Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs766 4160..4576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs766.1.1prot_H-canaliculatus_M_contigs766.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs766 311..4576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs766.1.1

>prot_H-canaliculatus_M_contigs766.1.1 ID=prot_H-canaliculatus_M_contigs766.1.1|Name=mRNA_H-canaliculatus_M_contigs766.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=340bp
MNLPPVGSPFMSPAPVMDPRQMVEQEEVGLDVGIEPGAGLGGYPGMDGDL
RIISREIYQGKTFDDWDDMEANVRRLARKAGFKVVKDSKGEKRADGRQKR
IVWKCDCAGIKTPRKGPKELSPLPSRERPSKRQGCPFQINATWPEKCLQP
GVTRCTLEHNHRLTGPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRT
QMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRRAAAAAAAAAAAAAAA
PAAVVASLPSSRVNDPIFRDSMTIIGNALRQALESGADAPGLKRRCEGFA
EGLRKTTVAATDNTDPSRKRMRVDAGGPSPGVSVGGGGIG
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mRNA from alignment at H-canaliculatus_M_contigs766:311..4576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs766.1.1 ID=mRNA_H-canaliculatus_M_contigs766.1.1|Name=mRNA_H-canaliculatus_M_contigs766.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4266bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs766:311..4576+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAATCTACCGCCCGTCGGATCCCCTTTTATGTCTCCGGCACCAGTCAT
GGACCCGCGTCAGATGGTGGAGCAAGAGGAGGTCGGCCTCGACGTCGGCA
TCGAGCCCGGGGCCGGCCTTGGCGGCTACCCGGGTATGGACGGGGACCTC
AGGATCATCTCTCGTGAGATCTACCAGGGAAAGACTTTCGACGACTGGGA
CGACATGGAGGCCAACGTTCGCCGCCTGGCACGCAAGGCGGGCTTCAAGG
TGGTGAAGGTGAGATCACGAATCAGGTACCAAAAGGACCCCCCTTCGCTT
CGCGACCGCCTGGGTTTGTGAAGCTTCTCTTCATCGCTCGACGCGCTCGT
TTGAAATTAAATTATCCGCTGTGCTCCTTCGTCTGGAGCCTCTCGCGCGA
TCTGCCGCAGGATATCGAGCACGTTTTTGCGGCGATCCGGTTGCGCACCG
CGGCTTCGCTTTCGTATGCCGGCCAGAGCGTTTCGAGATGCCCCCCCCTC
TTCTCTGATTTATAGAGATCATACAACAGAGATGAATTGCCACGCCAGGC
ACGGCGGTTTGCCAGCGGCCGCCGCGTTCAAACGTTTTTGAGCGTTTGAA
CCTGTCAAGCACCCAGAAACGGCTTCGGGTCTTGCATGTTTTGGGACACA
TCACGCCCTCGAGGGAGAAACAGTAACAATAGATAACCCTGGACGGGATG
CCAGCGATAGCGGGTGGGATCAATTGGCTATTCATGACGAGCAGCTGTAG
CGGCTTCAGAGCACTCCTTGTAACGCGCTCGGAGTTGTGGCCTTCAGGGC
CGTTTTCGTGGAATCGAGAATCGATGAATCGATCAGGTGTGCGATACACT
TATCCTTCCGCAAAGTTGGCGTTTCCTGGCCGGGCAAGGGGTCGGGGGTC
GGCATGTCGGGACCGGGTGAGGAGGCAGCAGAGAGGGTGAGAGAGAAGTG
TCTGAAATCGCTCATTACTTTCGAGATGCGAGCTGCTCTCGACGGGCTGT
TTACGGCAGCAACGGTCAATTGCAGCAGTCCACCATCAGCAGTGTGCAAT
CTTTTCGTGGGTCCTGTTTCGTCTACGATCTCTGGGCTTCGTCTCGCACT
CGACGTTGCTCCATTCTGACACATGATAAGAAATGCAGATCACGCCTGTC
GCTTTCCCCGTACAACACCCGGCGTCCTTTGCGAGCATCCCGTACCGCCT
CGCTCACCCTCTCTTGGCTTCGTGTCTCGCAGCGGTTCTATGGGCGCTCT
ATCACCAGCTGAACGCGCCATCAAGAAAGCTCTTTCTCTCCTTGATTGAT
GGGAGTCATCCTTCACAATGAGGAAGAGCTGTATCGTGTATCGCAGCGGA
CTCAAACGTGACCCATACCTGCATCTGTCGCTGCATGGCAGGGAGTTTCA
ATCCTCATCCTCCAACTCCTCGTCATTGGTGTGCCTTCCAAATCTTTCTT
TCCTGCAGACTTCGCTGTGGGTTTCAAAAGTGATCGTACCAAGCAAAGAA
GTAACCGCTGACGTAAAATTCTAAAAAAATGCCACATGGGCCTCTCCCCC
CGGCCCACCGCCGCTACCGCCATAGGACTCGAAGGGCGAGAAACGTGCCG
ACGGCAGACAAAAGCGCATCGTGTGGAAATGTGACTGCGCCGGTATCAAG
ACTCCGCGCAAGGGACCGAAAGAGCTGTCGCCTCTGCCTTCTCGGGAGCG
ACCATCCAAGCGCCAGGGATGCCCCTTCCAGGTAAAAACCTGACGGTGAA
GCGGTCACGCAGATCTGGTATCTACTTGAAGTATTCGCATGTTTTGTGTG
ATGGGTGTTCTTTGGGGGCGCAAAAATGGACGCAAAAAACACGAGGAACC
GGGCGTGCGCCCCTTTTCTTATCCTGCCTTGGACAAGCGCCAATGACCTA
CAGTGCTCATAGAGCAGTACCAACGTCGATTCCCGGCGGGTCCGCTGTTG
TTGAAAGAGAGCAGCCGAGCGTCGGTTATTTGCGGGAGGTTTGGTGGAGG
CTTGCGCCGACCCTTGCGAAGGACCGATTCCAAGATACACTCGAATACAA
CGCTTAATCACCCTGCCGGCACAGGCAGCAGCAGTAGCTTATGGGGCCGG
TGGCTAGCGCGGTTGCCTGCTCATCGTGTATTTTCGTGTCTCGTCACCCA
GGCCGGCAAATATTTTCACCGTCGAACGCTACCAAGCGCGAGAGACAAAG
ATAAACCGTGCCAGATCCCTCCGCTGGGCATGTCTAAAGGCGCTGTGGCA
GATCTGAGAGTCGAGAAGACCAAATTGGTCAAATCCATCTGCTGTTAGTT
CACGTAGCGACAAGTTAGTGTCGTCGAAATTTGAGGAAGGTATTTATTCT
GCTCTCGCACAGCTCAAAAGTAGTGACCGCAGGCCCGTCCACATGTTGGA
TAGTTTTTCTTGGAAGCGCCTCTACGGTCACCGCGACCGAAGCCACCGAA
GCAGTTCCTTTCTCCGTTTGTCGGCGGCGGATGTGTGTTGTCAAGACACA
AATGTGCAACGCGGCATGAGGCTCCTACAGTCCGGAACTTGCACTAGTAT
CTGAAATCTCAGGGCTGTGACAGCACCACCCCAATAGTCGCCGTCTGACG
GCCCTGTCCTATGGTGCTTCTTCTGGAACAGAGTCAAGGGGTCGGACGAA
ACACTCTGTGGTTTCTCGTCTCGGTGCAAGGCTCGTGATGCTGCTGTGTG
CGGGTGTTTCCGTGAAGCACCTTCTGTTGTCGCGGTGGCAAACACGATGT
TGTTTTGTTTTTATTTTTTAGCGCACGTGAATTCGGTCCCGCTTCACCTT
TGACCGGCGGGCAAGGACCACATTTGCTGAATGTGTAGTGCGGCAGCGAC
TGGTTTTCCCTGCGAGAAGAGCCCTTGTTCTTTCCGTTGGAGGCGTGTTC
TGACAGAGCGCGTGTTGTATTCCGACGGGAGTTGCGTCATTCTCCATGGC
GCCCCCTTCTTTTGTGCTGAAGGGGCCATGGTGTCTCGTGTGCCGCTCGT
TAAGGCCCACCCCCTAGAAATTGCCGACCGACTAGGGTCACAACGAACTC
TGGTGTTGTACTTTCTCTGGACCCCACCCAGCATGTTCCCATATTTCTTT
TTCTGGTGTTTGCGCGGCACTGTCCGTCAACTCCGTACGAACACCCATGA
ACGTTTCCGCACGTATGATATGTTCCCCGGTCGGTCCTTTTCCCCTAACC
TTCCCTTTCTCTCGCGAGTCTCTCACCCGGTACCACCTCTTTCACCTTTC
TCCTTAGCGATCGACTCGAACCCGCCGAAGGGTGGACAAACGAATCGACG
CGCATCATCGCCGTCTCTTATCTTCTCACCCATCAACCACCCCACGCGCG
TGACAAAAATCAACGAACAGATCAACGCCACGTGGCCCGAGAAGTGTCTC
CAGCCTGGGGTGACCAGGTGCACCCTCGAACACAACCATCGCCTCACGGG
GCCCCTCCGCGCCGGCAGGCAAGACCCCGTTCTCCCCGAGGAGTTGCTGG
CGGAGCACGTGAGCGCGCTCAAGGAGTGGGCGAGGATCCCCGTCGCCGTC
CGCACACAGGTACACAGCGAGCGTGAAGGAAGCCGACGCCGACGCGCGAA
CCAAGAGCGCCGCGTTCAGTAGGGGAACGTGTGTCTCATATCTTGGAGTT
CTCCCGTGTAAAGCGTTGCGACGTCAAGGTAGACAGCCGTCGCCGCCTAG
ACCCTTGTTGCGTGTTTTCAGCGCTTGATAAACGCCTCGTGCCTGCCTGC
ATGTGCATTTCGTTAGCGATACCTTGAACGCTTGAAACCCATGCTAGCCA
TCAGTGCGTCACGCCGTCTCCTCCCTGCCGACCCCCCCCCCCAAACCAGA
TGCAAATACTCAGGCACGAGTTCTTCGAAGGTCGCCAGCTCTCTCTTGAG
GCCCAGCGCTGCGTTCACACCCTCTCCGGCCAGGAGGCCCCCCGTCGCCG
CGCCGCCGCAGCAGCCGCAGCCGCCGCCGCAGCCGCCGCAGCCGCACCAG
CGGCGGTGGTGGCTTCTCTCCCGAGCTCCCGCGTCAACGACCCCATCTTC
CGGGACAGCATGACCATCATCGGCAACGCTCTCCGCCAGGCCCTCGAGTC
CGGCGCAGACGCCCCCGGCCTCAAGAGACGATGCGAGGGCTTCGCGGAGG
GGCTCAGGAAGACCACGGTGGCGGCCACGGATAACACCGACCCTTCACGC
AAGAGGATGCGCGTCGATGCCGGAGGGCCGTCGCCCGGCGTCAGCGTCGG
CGGTGGCGGCATCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs766:311..4576+

>mRNA_H-canaliculatus_M_contigs766.1.1 ID=mRNA_H-canaliculatus_M_contigs766.1.1|Name=mRNA_H-canaliculatus_M_contigs766.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs766:311..4576+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAATCTACCGCCCGTCGGATCCCCTTTTATGTCTCCGGCACCAGTCAT
GGACCCGCGTCAGATGGTGGAGCAAGAGGAGGTCGGCCTCGACGTCGGCA
TCGAGCCCGGGGCCGGCCTTGGCGGCTACCCGGGTATGGACGGGGACCTC
AGGATCATCTCTCGTGAGATCTACCAGGGAAAGACTTTCGACGACTGGGA
CGACATGGAGGCCAACGTTCGCCGCCTGGCACGCAAGGCGGGCTTCAAGG
TGGTGAAGGACTCGAAGGGCGAGAAACGTGCCGACGGCAGACAAAAGCGC
ATCGTGTGGAAATGTGACTGCGCCGGTATCAAGACTCCGCGCAAGGGACC
GAAAGAGCTGTCGCCTCTGCCTTCTCGGGAGCGACCATCCAAGCGCCAGG
GATGCCCCTTCCAGATCAACGCCACGTGGCCCGAGAAGTGTCTCCAGCCT
GGGGTGACCAGGTGCACCCTCGAACACAACCATCGCCTCACGGGGCCCCT
CCGCGCCGGCAGGCAAGACCCCGTTCTCCCCGAGGAGTTGCTGGCGGAGC
ACGTGAGCGCGCTCAAGGAGTGGGCGAGGATCCCCGTCGCCGTCCGCACA
CAGATGCAAATACTCAGGCACGAGTTCTTCGAAGGTCGCCAGCTCTCTCT
TGAGGCCCAGCGCTGCGTTCACACCCTCTCCGGCCAGGAGGCCCCCCGTC
GCCGCGCCGCCGCAGCAGCCGCAGCCGCCGCCGCAGCCGCCGCAGCCGCA
CCAGCGGCGGTGGTGGCTTCTCTCCCGAGCTCCCGCGTCAACGACCCCAT
CTTCCGGGACAGCATGACCATCATCGGCAACGCTCTCCGCCAGGCCCTCG
AGTCCGGCGCAGACGCCCCCGGCCTCAAGAGACGATGCGAGGGCTTCGCG
GAGGGGCTCAGGAAGACCACGGTGGCGGCCACGGATAACACCGACCCTTC
ACGCAAGAGGATGCGCGTCGATGCCGGAGGGCCGTCGCCCGGCGTCAGCG
TCGGCGGTGGCGGCATCGGG
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