mRNA_H-canaliculatus_M_contigs76469.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76469.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76469.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76469.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG09_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.910e-22
Identity = 56/96 (58.33%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 AAPLSEPRNLDKACKHESLEQKWAAWQ-ENEGPAPLLGKPAPAPVAMAEGGRGDDGDPISFGGSSGGGE-----SRKWAGVGDFHDKVAFLGDYVA 270
            AAPLS P   +     E+LEQKWAAWQ EN GPAPLLGKPAPAPV +AE G  D G    FG             R+W G  DFHDKVAFLGDYVA
Sbjct:   56 AAPLSAPGGRENGHTRETLEQKWAAWQSENRGPAPLLGKPAPAPV-VAEAGSSDSGGRGMFGXXXXXXXXXXXXGRRWGGAEDFHDKVAFLGDYVA 150
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BLAST of mRNA_H-canaliculatus_M_contigs76469.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC34_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.710e-12
Identity = 46/97 (47.42%), Postives = 49/97 (50.52%), Query Frame = 1 
Query:    1 AAPLSEPRNLDKACKHESLEQKWAAWQ-ENEGPAPLLGKPAPAPVAMAEGGRGDDGDPISFGGSSGGGE------SRKWAGVGDFHDKVAFLGDYVA 270
            AAPLS P   + A   E+LEQKWAAWQ EN GPAPLLGKPA                                   R+W G  DFHDKVAFLGDYVA
Sbjct:  322 AAPLSAPGGRENARTRETLEQKWAAWQSENRGPAPLLGKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRWRGAEDFHDKVAFLGDYVA 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76469.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.910e-2258.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.710e-1247.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76469contigH-canaliculatus_M_contigs76469:257..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size270
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.9459448-CDS-H-canaliculatus_M_contigs76469:256..5261696854102.9459448-CDS-H-canaliculatus_M_contigs76469:256..526Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76469 257..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76469.1.1prot_H-canaliculatus_M_contigs76469.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76469 257..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76469.1.1

>prot_H-canaliculatus_M_contigs76469.1.1 ID=prot_H-canaliculatus_M_contigs76469.1.1|Name=mRNA_H-canaliculatus_M_contigs76469.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=90bp
AAPLSEPRNLDKACKHESLEQKWAAWQENEGPAPLLGKPAPAPVAMAEGG
RGDDGDPISFGGSSGGGESRKWAGVGDFHDKVAFLGDYVA
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mRNA from alignment at H-canaliculatus_M_contigs76469:257..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76469.1.1 ID=mRNA_H-canaliculatus_M_contigs76469.1.1|Name=mRNA_H-canaliculatus_M_contigs76469.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=270bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76469:257..526+ (Hapterophycus canaliculatus Oshoro7m male)
GCAGCCCCTCTTTCCGAACCGCGAAACCTGGACAAGGCGTGCAAACACGA
GAGTCTCGAGCAAAAATGGGCCGCATGGCAAGAAAACGAGGGGCCCGCTC
CCCTACTTGGAAAGCCTGCTCCTGCGCCGGTGGCGATGGCGGAGGGGGGC
AGGGGTGACGACGGCGACCCGATCTCGTTTGGCGGGAGCAGCGGAGGCGG
TGAAAGCCGCAAGTGGGCTGGGGTTGGGGACTTCCACGATAAGGTGGCGT
TTTTGGGGGACTATGTAGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76469:257..526+

>mRNA_H-canaliculatus_M_contigs76469.1.1 ID=mRNA_H-canaliculatus_M_contigs76469.1.1|Name=mRNA_H-canaliculatus_M_contigs76469.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=270bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76469:257..526+ (Hapterophycus canaliculatus Oshoro7m male)
GCAGCCCCTCTTTCCGAACCGCGAAACCTGGACAAGGCGTGCAAACACGA
GAGTCTCGAGCAAAAATGGGCCGCATGGCAAGAAAACGAGGGGCCCGCTC
CCCTACTTGGAAAGCCTGCTCCTGCGCCGGTGGCGATGGCGGAGGGGGGC
AGGGGTGACGACGGCGACCCGATCTCGTTTGGCGGGAGCAGCGGAGGCGG
TGAAAGCCGCAAGTGGGCTGGGGTTGGGGACTTCCACGATAAGGTGGCGT
TTTTGGGGGACTATGTAGCG
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