mRNA_H-canaliculatus_M_contigs76264.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs76264.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs76264.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: Adaptor (protein complex 1 subunit gamma (Fragment) n=1 Tax=Isochrysis galbana TaxID=37099 RepID=A0A0M4J7Q5_ISOGA)

HSP 1 Score: 51.2 bits (121), Expect = 1.140e-6
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1

Query:   10 VTGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSM 141
            + GL+FQ AVPK++RL+M PAS +VV    +G V QV ++ NSM
Sbjct:   42 IEGLNFQVAVPKFMRLQMTPASSTVVPPNNSGKVTQVFKVANSM 85

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: AP-1 (complex subunit gamma n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I093_KLENI)

HSP 1 Score: 52.8 bits (125), Expect = 1.770e-6
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1

Query:    4 SDVTGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSMQ 144
            S  T   FQAAVPK++ L ++PASGSVV A  AG V Q + +TNS+Q
Sbjct:  771 SPFTDFVFQAAVPKFMTLSLEPASGSVVPAGQAGSVTQTINVTNSLQ 817

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: AP-1 (complex subunit gamma n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XH90_DIALT)

HSP 1 Score: 52.8 bits (125), Expect = 1.770e-6
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 1

Query:    4 SDVTGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNS 138
            S +T   FQAAVPK+++++MQPASGSVV A  +G V Q++++ NS
Sbjct:  793 SPLTDFVFQAAVPKFMKMQMQPASGSVVPAGNSGAVTQLLKLANS 837

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: AP-1 (complex subunit gamma n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W898_MARPO)

HSP 1 Score: 52.8 bits (125), Expect = 1.770e-6
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1

Query:   13 TGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSM 141
            T   FQAAVPK+L+L+++PASGSV+ A G G++ Q + +TN+M
Sbjct:  835 TDFIFQAAVPKFLQLQLEPASGSVLPASGGGLITQSINLTNTM 877

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: AP-1 (complex subunit gamma n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQ80_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 4.520e-6
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1

Query:   10 VTGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSMQ 144
            +  L+FQ AVPKY++L+M PASG+VV    +G + Q+ ++ NSMQ
Sbjct:  711 IAALNFQVAVPKYMKLQMSPASGNVVPPSNSGKLTQLFKVANSMQ 755

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X1K0_9SPIT)

HSP 1 Score: 50.8 bits (120), Expect = 5.140e-6
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1

Query:   16 GLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSM 141
            GL+FQ AVPKY++L+M PAS S V   G G V Q+ ++ NSM
Sbjct:  126 GLNFQVAVPKYMKLQMTPASSSTVPPNGMGKVTQLFKVANSM 167

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: GAE (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST39_9ARCH)

HSP 1 Score: 48.5 bits (114), Expect = 8.260e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1

Query:   19 LHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSMQ 144
            L FQAAVPKYL+LEM P S + +     G V Q VR++NSMQ
Sbjct:   33 LVFQAAVPKYLKLEMLPPSSTTISPNSKGSVTQEVRLSNSMQ 74

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: AP-1 (complex subunit gamma n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8ML88_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 8.460e-6
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 1

Query:   10 VTGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSMQ 144
            VT    QAAVPKYL+L+M+PA+G+ +   G+G V+Q++R+ NS++
Sbjct:  738 VTDFVLQAAVPKYLQLKMEPATGNQLGPLGSGAVQQIMRVVNSLE 782

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TYL7_EMIHU)

HSP 1 Score: 49.7 bits (117), Expect = 9.530e-6
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1

Query:   10 VTGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSM 141
            +TG +FQ AVPKY++L+M PAS S V    +G V Q  ++ NSM
Sbjct:   89 LTGFNFQVAVPKYMKLQMSPASSSTVPPSNSGKVTQTFKVANSM 132

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BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Match: AP-1 (complex subunit gamma n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IU02_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 1.160e-5
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1

Query:   10 VTGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSM 141
            +  L+FQ AVPKY++L+M PASG+VV    +G V Q+ ++ NSM
Sbjct:  782 IGALNFQVAVPKYMKLQMSPASGNVVPPNNSGKVTQLFKVANSM 825

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs76264.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Adaptor	1.140e-6	52.27	protein complex 1 subunit gamma (Fragment) n=1 Tax...	[more]
AP-1	1.770e-6	55.32	complex subunit gamma n=1 Tax=Klebsormidium nitens...	[more]
AP-1	1.770e-6	53.33	complex subunit gamma n=1 Tax=Diacronema lutheri T...	[more]
AP-1	1.770e-6	53.49	complex subunit gamma n=2 Tax=Marchantia polymorph...	[more]
AP-1	4.520e-6	48.89	complex subunit gamma n=1 Tax=Coccolithus braarudi...	[more]
Hypothetical	5.140e-6	54.76	protein (Fragment) n=1 Tax=Strombidinopsis acumina...	[more]
GAE	8.260e-6	57.14	domain-containing protein n=1 Tax=archaeon TaxID=1...	[more]
AP-1	8.460e-6	48.89	complex subunit gamma n=1 Tax=Chloropicon primus T...	[more]
Hypothetical	9.530e-6	50.00	protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID...	[more]
AP-1	1.160e-5	50.00	complex subunit gamma n=1 Tax=Calcidiscus leptopor...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs76264	contig	H-canaliculatus_M_contigs76264:111..290 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	55529.EKX32076
PFAMs	Adaptin_N,Alpha_adaptinC2
Model size	180
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11279,ko:K12391
KEGG Pathway	ko04142,map04142
Hectar predicted targeting category	other localisation
Exons	1
Evalue	2.6e-06
EggNOG OGs	COG4354@1\|root,KOG1062@2759\|Eukaryota
Description	intracellular protein transport
Cds size	180
COG category	G
BRITE	ko00000,ko00001,ko03036,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854100.9200125-CDS-H-canaliculatus_M_contigs76264:110..290	1696854100.9200125-CDS-H-canaliculatus_M_contigs76264:110..290	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs76264 111..290 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs76264.1.1	prot_H-canaliculatus_M_contigs76264.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs76264 111..290 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs76264:111..290+
coding sequence from alignment at H-canaliculatus_M_contigs76264:111..290+

protein sequence of mRNA_H-canaliculatus_M_contigs76264.1.1

>prot_H-canaliculatus_M_contigs76264.1.1 ID=prot_H-canaliculatus_M_contigs76264.1.1|Name=mRNA_H-canaliculatus_M_contigs76264.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=60bp
NSDVTGLHFQAAVPKYLRLEMQPASGSVVKARGAGVVEQVVRITNSMQAS
ERGAARGTVS

mRNA from alignment at H-canaliculatus_M_contigs76264:111..290+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs76264.1.1 ID=mRNA_H-canaliculatus_M_contigs76264.1.1|Name=mRNA_H-canaliculatus_M_contigs76264.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76264:111..290+ (Hapterophycus canaliculatus Oshoro7m male)
AACAGCGATGTAACTGGTCTACACTTCCAGGCCGCGGTGCCGAAGTATCT
CCGATTGGAGATGCAGCCCGCATCGGGCTCGGTGGTTAAGGCAAGGGGCG
CGGGCGTCGTGGAGCAGGTCGTGCGCATCACCAACTCAATGCAGGCAAGC
GAACGGGGGGCAGCAAGGGGCACGGTGTCC

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76264:111..290+

>mRNA_H-canaliculatus_M_contigs76264.1.1 ID=mRNA_H-canaliculatus_M_contigs76264.1.1|Name=mRNA_H-canaliculatus_M_contigs76264.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76264:111..290+ (Hapterophycus canaliculatus Oshoro7m male)
AACAGCGATGTAACTGGTCTACACTTCCAGGCCGCGGTGCCGAAGTATCT
CCGATTGGAGATGCAGCCCGCATCGGGCTCGGTGGTTAAGGCAAGGGGCG
CGGGCGTCGTGGAGCAGGTCGTGCGCATCACCAACTCAATGCAGGCAAGC
GAACGGGGGGCAGCAAGGGGCACGGTGTCC