mRNA_H-canaliculatus_M_contigs76167.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76167.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76167.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY6_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.400e-34
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGT I  LGLFL+FTH  VAGRRD+GELAGGL
Sbjct:  494 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTVIMFLGLFLVFTHGSVAGRRDLGELAGGL 562
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0Y2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.660e-24
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFVDTYGVPRY+EANPALFTAA+FPFLYG+M+GDIGHG+ + LLGLFLI +   V  ++ MGE++ G+
Sbjct:  118 QEFVDTYGVPRYQEANPALFTAATFPFLYGVMYGDIGHGSCVALLGLFLILSWGQVKDKK-MGEMSDGI 185
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GPD2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.680e-23
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFV+TYG+PRY+EANPALFTAA+FPFL+G+M+GDIGHG  +F  GLFL++          +GE+AGG+
Sbjct:   30 QEFVNTYGIPRYREANPALFTAATFPFLFGVMYGDIGHGLFLFCAGLFLLYKEK-EHDEAKLGEMAGGM 97
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (ATP synthase subunit I n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCZ1_9ARCH)

HSP 1 Score: 99.8 bits (247), Expect = 7.860e-23
Identity = 45/69 (65.22%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFV+TYGVPRY+EANPALFTAA+FPFL+G+M+GDIGHG+ + + GL+LIFT +  AG+R M E+  G+
Sbjct:  281 QEFVNTYGVPRYREANPALFTAATFPFLFGVMYGDIGHGSVLAIAGLYLIFTESR-AGQRGMDEMLNGI 348
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRF2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.590e-22
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFVDTYGVPRYKEANPALFTA +FPFL+G+M+GDIGHG  IFL GL L+ +   +  ++ M E++ G+
Sbjct:   31 QEFVDTYGVPRYKEANPALFTAVTFPFLFGVMYGDIGHGFIIFLGGLMLVLSERSMENKK-MDEMSAGI 98
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.740e-22
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMG---ELAGGL 207
            QEFVDTYGVPRYKEANPALF AA+FPFLYG+M+GDIGHG  +FL GLFLI++ +     R  G   E+AGG+
Sbjct:  441 QEFVDTYGVPRYKEANPALFAAATFPFLYGVMYGDIGHGFCLFLGGLFLIYSDSKRPKGRRAGKDDEMAGGM 512
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLT6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.510e-22
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFVDTYGVPRYKEANPALFTA +FPFL+G+M+GDIGHG+ I L   FL+F    + G R M E+ GG+
Sbjct:  419 QEFVDTYGVPRYKEANPALFTAVTFPFLFGVMYGDIGHGSLILLASAFLVFKERSMEGVR-MNEMMGGV 486
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTU3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.520e-22
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFVDTYGVPRYKE NP+LFTA +FPFL+G+M+GD+GHGT IFL GLFL  ++A  A  +   E+  G+
Sbjct:  425 QEFVDTYGVPRYKEINPSLFTAVTFPFLFGMMYGDVGHGTCIFLGGLFLCASYASFAKSKSTDEMMAGI 493
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BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q253_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.300e-21
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFV+TYG+PRY+EANPALFTAA+FPFL+G+M+GDIGHGT +F  GL+L++       +  +GE+A G+
Sbjct:  391 QEFVNTYGIPRYREANPALFTAATFPFLFGVMYGDIGHGTFLFCAGLYLLYNEK-ANDKAKLGEMAAGM 458
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Match: V-type (proton ATPase subunit a (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKL0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.440e-21
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLIFTHAGVAGRRDMGELAGGL 207
            QEFV+TYG+PRY+EANPALFTAA+FPFL+G+M+GDIGHG  +F  GLFL++          +GE+AGGL
Sbjct:  348 QEFVNTYGIPRYREANPALFTAATFPFLFGVMYGDIGHGLFLFCSGLFLLYKEK-ENDNAKLGEMAGGL 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76167.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V-type1.400e-3489.86proton ATPase subunit a n=1 Tax=Ectocarpus silicul... [more]
V-type2.660e-2468.12proton ATPase subunit a (Fragment) n=1 Tax=Fibroca... [more]
V-type1.680e-2360.87proton ATPase subunit a (Fragment) n=1 Tax=Helicot... [more]
V-type7.860e-2365.22ATP synthase subunit I n=1 Tax=archaeon TaxID=1906... [more]
V-type1.590e-2262.32proton ATPase subunit a (Fragment) n=1 Tax=Florenc... [more]
V-type2.740e-2266.67proton ATPase subunit a n=1 Tax=Tribonema minus Ta... [more]
V-type9.510e-2265.22proton ATPase subunit a n=2 Tax=Rhizochromulina ma... [more]
V-type9.520e-2262.32proton ATPase subunit a n=1 Tax=Aureoumbra lagunen... [more]
V-type3.300e-2159.42proton ATPase subunit a n=1 Tax=Chaetoceros debili... [more]
V-type4.440e-2162.32proton ATPase subunit a (Fragment) n=1 Tax=Ditylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76167contigH-canaliculatus_M_contigs76167:231..440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPY6
PFAMsV_ATPase_I
Model size210
Max annot lvl2759|Eukaryota
KEGG koko:K02154
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko04966,ko05110,ko05120,ko05152,ko05165,ko05323,map00190,map01100,map04142,map04145,map04721,map04966,map05110,map05120,map05152,map05165,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.29e-35
EggNOG OGsCOG1269@1|root,KOG2189@2759|Eukaryota
Descriptionvacuolar proton-transporting V-type ATPase complex assembly
Cds size210
COG categoryU
BRITEko00000,ko00001,ko00002,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.682931-CDS-H-canaliculatus_M_contigs76167:230..4401696854099.682931-CDS-H-canaliculatus_M_contigs76167:230..440Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76167 231..440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76167.1.1prot_H-canaliculatus_M_contigs76167.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76167 231..440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76167.1.1

>prot_H-canaliculatus_M_contigs76167.1.1 ID=prot_H-canaliculatus_M_contigs76167.1.1|Name=mRNA_H-canaliculatus_M_contigs76167.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=70bp
QEFVDTYGVPRYKEANPALFTAASFPFLYGIMFGDIGHGTAIFLLGLFLI
FTHAGVAGRRDMGELAGGL*
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mRNA from alignment at H-canaliculatus_M_contigs76167:231..440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76167.1.1 ID=mRNA_H-canaliculatus_M_contigs76167.1.1|Name=mRNA_H-canaliculatus_M_contigs76167.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76167:231..440+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGAGTTCGTCGACACCTACGGCGTACCCCGCTACAAAGAGGCCAACCC
GGCCCTCTTCACGGCGGCCTCCTTCCCGTTCCTGTACGGCATCATGTTCG
GCGACATCGGGCACGGCACGGCCATCTTCCTGCTCGGCCTCTTCCTCATC
TTCACGCACGCCGGTGTAGCCGGGCGGAGGGACATGGGCGAGCTCGCCGG
TGGCCTGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76167:231..440+

>mRNA_H-canaliculatus_M_contigs76167.1.1 ID=mRNA_H-canaliculatus_M_contigs76167.1.1|Name=mRNA_H-canaliculatus_M_contigs76167.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76167:231..440+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGAGTTCGTCGACACCTACGGCGTACCCCGCTACAAAGAGGCCAACCC
GGCCCTCTTCACGGCGGCCTCCTTCCCGTTCCTGTACGGCATCATGTTCG
GCGACATCGGGCACGGCACGGCCATCTTCCTGCTCGGCCTCTTCCTCATC
TTCACGCACGCCGGTGTAGCCGGGCGGAGGGACATGGGCGAGCTCGCCGG
TGGCCTGTGA
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