mRNA_H-canaliculatus_M_contigs76145.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76145.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76145.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: PCI (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX3_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.330e-17
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVDA 123
            +VGGVVETNRPD+KNAQYQACIKQGDLLLNRVQKLGRVVDA
Sbjct:  375 KVGGVVETNRPDSKNAQYQACIKQGDLLLNRVQKLGRVVDA 415
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BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: 26S (proteasome non-ATPase regulatory subunit 6-like protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8A1J6_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 2.680e-15
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVD 120
            +V GVVETNRPD KNAQYQ CIKQGDLLLNRVQKL RV++
Sbjct:   51 RVNGVVETNRPDAKNAQYQQCIKQGDLLLNRVQKLSRVIN 90
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BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: 26S (proteasome subunit RPN7-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XRQ4_9FUNG)

HSP 1 Score: 74.7 bits (182), Expect = 1.020e-14
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVD 120
            +VGGVVETNRPD KNAQYQ+CIKQGDLLLNRVQKL RV++
Sbjct:  301 KVGGVVETNRPDAKNAQYQSCIKQGDLLLNRVQKLSRVIN 340
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BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: 26S (proteasome non-ATPase regulatory subunit 6 (Fragment) n=1 Tax=Rhipicephalus appendiculatus TaxID=34631 RepID=A0A131ZCD6_RHIAP)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-14
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVD 120
            +VGGVV+T RPD KN QYQACIKQGD+LLNR+QKL RV++
Sbjct:   42 KVGGVVQTTRPDIKNHQYQACIKQGDILLNRIQKLSRVIN 81
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BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: 26S (proteasome non-ATPase regulatory subunit 6 n=6 Tax=Entelegynae TaxID=74971 RepID=A0A4Y2PNE3_ARAVE)

HSP 1 Score: 72.8 bits (177), Expect = 6.190e-14
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVD 120
            +VGG+VETNRPD+KN QYQACIKQGD+LLNRVQKL RV++
Sbjct:  349 KVGGIVETNRPDSKNYQYQACIKQGDILLNRVQKLSRVIN 388
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BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: 26S (proteasome non-ATPase regulatory subunit 6-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B10299)

HSP 1 Score: 72.4 bits (176), Expect = 8.510e-14
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVD 120
            +VGG+VETNRPD+KN QYQACIKQGD+LLNR+QKL RV++
Sbjct:  349 KVGGIVETNRPDSKNYQYQACIKQGDILLNRIQKLSRVIN 388
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BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: 26S (proteasome non-ATPase regulatory subunit 6 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A4D5RUD3_IXOSC)

HSP 1 Score: 69.7 bits (169), Expect = 1.080e-13
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVD 120
            +VG VVETNRPD+KN QYQACIKQGD+LLNR+QKL RV++
Sbjct:  136 KVGEVVETNRPDSKNYQYQACIKQGDILLNRIQKLSRVIN 175
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BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: 26S (proteasome non-ATPase regulatory subunit 6 n=2 Tax=Pulicidae TaxID=7511 RepID=A0A6M2DLX2_9NEOP)

HSP 1 Score: 72.0 bits (175), Expect = 1.170e-13
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVD 120
            +VGG+VETNRPDTKN+QYQA IKQGDLLLNR+QKL RV++
Sbjct:  349 RVGGIVETNRPDTKNSQYQAVIKQGDLLLNRIQKLSRVIN 388
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: 26S (proteasome non-ATPase regulatory subunit 6 n=1 Tax=Rhipicephalus zambeziensis TaxID=60191 RepID=A0A224YQX5_9ACAR)

HSP 1 Score: 67.8 bits (164), Expect = 1.360e-13
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVV 117
            +VGGVV+T RPD KN QYQACIKQGD+LLNR+QKL RV+
Sbjct:   69 KVGGVVQTTRPDIKNHQYQACIKQGDILLNRIQKLSRVI 107
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Match: PCI (domain-containing protein n=2 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P9B0_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 1.400e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVD 120
            +V G+VETNRPD KNAQYQA IKQGDLLLNRVQKLGRV++
Sbjct:  308 KVNGIVETNRPDAKNAQYQAVIKQGDLLLNRVQKLGRVIN 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76145.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PCI2.330e-1795.12domain-containing protein n=1 Tax=Ectocarpus silic... [more]
26S2.680e-1582.50proteasome non-ATPase regulatory subunit 6-like pr... [more]
26S1.020e-1485.00proteasome subunit RPN7-domain-containing protein ... [more]
26S3.510e-1475.00proteasome non-ATPase regulatory subunit 6 (Fragme... [more]
26S6.190e-1480.00proteasome non-ATPase regulatory subunit 6 n=6 Tax... [more]
26S8.510e-1477.50proteasome non-ATPase regulatory subunit 6-like n=... [more]
26S1.080e-1377.50proteasome non-ATPase regulatory subunit 6 n=1 Tax... [more]
26S1.170e-1380.00proteasome non-ATPase regulatory subunit 6 n=2 Tax... [more]
26S1.360e-1376.92proteasome non-ATPase regulatory subunit 6 n=1 Tax... [more]
PCI1.400e-1382.50domain-containing protein n=2 Tax=Endogone sp. FLA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76145contigH-canaliculatus_M_contigs76145:336..461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRX3
Preferred nameRPN7
PFAMsPCI,RPN7
Model size126
Max annot lvl2759|Eukaryota
KEGG rclassRC00149
KEGG koko:K00134,ko:K03037,ko:K08869
KEGG ReactionR01061
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03050,ko04066,ko05010,ko05169,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03050,map04066,map05010,map05169
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00341,M00552
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016020,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Exons1
Evalue3.82e-18
EggNOG OGsCOG5187@1|root,KOG0687@2759|Eukaryota
EC1.2.1.12
Descriptionproteasome-mediated ubiquitin-dependent protein catabolic process
Cds size126
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03051,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.5140274-CDS-H-canaliculatus_M_contigs76145:335..4611696854099.5140274-CDS-H-canaliculatus_M_contigs76145:335..461Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76145 336..461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76145.1.1prot_H-canaliculatus_M_contigs76145.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76145 336..461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76145.1.1

>prot_H-canaliculatus_M_contigs76145.1.1 ID=prot_H-canaliculatus_M_contigs76145.1.1|Name=mRNA_H-canaliculatus_M_contigs76145.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
QVGGVVETNRPDTKNAQYQACIKQGDLLLNRVQKLGRVVDA*
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mRNA from alignment at H-canaliculatus_M_contigs76145:336..461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76145.1.1 ID=mRNA_H-canaliculatus_M_contigs76145.1.1|Name=mRNA_H-canaliculatus_M_contigs76145.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76145:336..461- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGGAGGCGTGGTGGAGACCAACCGGCCCGACACAAAAAACGCCCA
GTACCAGGCGTGCATCAAGCAGGGGGATCTGCTGCTCAACCGAGTGCAGA
AGCTGGGGCGGGTGGTGGATGCGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76145:336..461-

>mRNA_H-canaliculatus_M_contigs76145.1.1 ID=mRNA_H-canaliculatus_M_contigs76145.1.1|Name=mRNA_H-canaliculatus_M_contigs76145.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76145:336..461- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGGAGGCGTGGTGGAGACCAACCGGCCCGACACAAAAAACGCCCA
GTACCAGGCGTGCATCAAGCAGGGGGATCTGCTGCTCAACCGAGTGCAGA
AGCTGGGGCGGGTGGTGGATGCGTAA
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