mRNA_H-canaliculatus_M_contigs76122.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: LysR (family transcriptional regulator n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2FDN0_9RHOB) HSP 1 Score: 194 bits (493), Expect = 1.350e-59 Identity = 85/127 (66.93%), Postives = 104/127 (81.89%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
ETV+PVCAP++L +P D + IL HPLLHL+TR +GWARW HG+ + +P GM+FDQFSTMAQAA+HG+G+ALLPTFVAEPYLN+ QL RA+ HT+DSIGTYYLVWP DR APL AF++WL Q
Sbjct: 166 ETVIPVCAPDLLEQPVADPRAILKHPLLHLETRQKGWARWLSAHGIDEIIPSGMMFDQFSTMAQAALHGMGIALLPTFVAEPYLNSGQLCRASTHTSDSIGTYYLVWPSDRANIAPLNAFKTWLKLQ 292
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: DNA-binding (transcriptional LysR family regulator n=8 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A2T6CG06_9RHOB) HSP 1 Score: 187 bits (476), Expect = 5.760e-57 Identity = 88/127 (69.29%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
ETVVPVCAP++L P D +DILDHPLLHL+TRPRGWARW V D P GM+FDQFSTMAQAA+HGLGVALLPTF AEPYL + QL A+R T SIG+YYLVWP DR EGA L +FR WL Q
Sbjct: 166 ETVVPVCAPDLLEAPLTDPQDILDHPLLHLETRPRGWARWLAALNVETDPPAGMMFDQFSTMAQAAIHGLGVALLPTFFAEPYLRDGQLQLASRETTQSIGSYYLVWPHDRPEGAALSSFRDWLSEQ 292
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: DNA-binding (transcriptional LysR family regulator n=3 Tax=Sulfitobacter geojensis TaxID=1342299 RepID=A0A7Y9Z2P1_9RHOB) HSP 1 Score: 187 bits (474), Expect = 1.260e-56 Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
ETVVPVCAPE+L P +A+D+L+HPLLHL+TRPRGWARW GVT D P GM+FDQFSTMAQAA+HGLGVALLPTF AEPYL + QL A+ T SIG YYLVWP+ R EGA L +FR+WL Q
Sbjct: 166 ETVVPVCAPELLSAPVIEARDMLEHPLLHLETRPRGWARWLAALGVTADPPAGMVFDQFSTMAQAAIHGLGVALLPTFFAEPYLRDGQLMLASAQTTQSIGNYYLVWPETRDEGAALTSFRNWLAGQ 292
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: HTH (lysR-type domain-containing protein n=4 Tax=root TaxID=1 RepID=A0A0F9SIQ9_9ZZZZ) HSP 1 Score: 184 bits (468), Expect = 8.780e-56 Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQT 384
ETV+PVC+PE+L P ++A +IL HPLLHLDTRPRGW+RW GVTQD P GM+FDQFSTMAQAA+HGLGVALLPTF A PYL + QL A+ T SIG YYLVWP+D E A LK+F+ WL QT
Sbjct: 166 ETVMPVCSPELLDAPLENAAEILAHPLLHLDTRPRGWSRWLSALGVTQDPPAGMVFDQFSTMAQAAVHGLGVALLPTFSAAPYLRDGQLVLASTQTTHSIGNYYLVWPEDHVETAALKSFKGWLAAQT 293
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: Transcriptional (regulator, LysR family n=14 Tax=root TaxID=1 RepID=A0A1H2RDK6_9RHOB) HSP 1 Score: 184 bits (467), Expect = 1.240e-55 Identity = 86/129 (66.67%), Postives = 101/129 (78.29%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQTG 387
ETVVPVCAPE+L EP +D IL + LLHL+TRPRGW+RW GVTQ+ P GM+FDQFSTMAQAA+HGLGVALLPTF AEPYL + QL A+ T SIG YYLVWP+DR E A L++F++WL QTG
Sbjct: 166 ETVVPVCAPELLTEPLEDPSQILRYALLHLETRPRGWSRWLSALGVTQEPPAGMMFDQFSTMAQAAVHGLGVALLPTFSAEPYLRDGQLVLASTQTTQSIGNYYLVWPEDRAETAALQSFKTWLDGQTG 294
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: Transcriptional (regulator, LysR family n=1 Tax=Roseobacter sp. (strain GAI101) TaxID=391589 RepID=B7RN59_ROSS0) HSP 1 Score: 184 bits (466), Expect = 1.760e-55 Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
ETVVPVCAPE+L P +DA+ IL +PLLHLDTRPRGWARW GVT++ P GM+FDQFSTMAQAA+HGLGVALLPTF A+PYL + QL A+ T SIG YYLVWP++R E A L++F+SWL Q
Sbjct: 166 ETVVPVCAPELLDAPLEDARAILSYPLLHLDTRPRGWARWLAALGVTEEPPSGMMFDQFSTMAQAAVHGLGVALLPTFSADPYLRDGQLVLASTQTTQSIGNYYLVWPEERAETAALRSFKSWLAGQ 292
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: LysR (family transcriptional regulator n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A7Y2CX59_9RHOB) HSP 1 Score: 182 bits (462), Expect = 7.060e-55 Identity = 84/127 (66.14%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
ETVVPVCAP++L P ++A+DIL++PLLHL+TRPRGWARW GV D P GM+FDQFSTMAQAA+HGLGVALLPTF A+PYL + QLA A++ T SIG+YYLVWP +R E A L +FR+WL Q
Sbjct: 166 ETVVPVCAPDLLEAPLEEARDILNYPLLHLETRPRGWARWLSALGVEADPPGGMVFDQFSTMAQAAIHGLGVALLPTFFADPYLRDGQLALASQQTTQSIGSYYLVWPGERAESAALLSFRNWLEMQ 292
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: Transcriptional (regulator, LysR family n=3 Tax=Sulfitobacter TaxID=60136 RepID=A0A1I6RNX9_9RHOB) HSP 1 Score: 181 bits (458), Expect = 2.830e-54 Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQT 384
ETVVPVCAPE+L P DIL +PLLHL+TRP+GWARW + GV + P GMIFDQFSTMAQAA+HGLGVALLPTF A+PYL +QL A+ T SIG YYLVWP+DR E A L++F++WL TQT
Sbjct: 166 ETVVPVCAPELLETPLNSPADILRYPLLHLETRPKGWARWLEALGVRDEPPSGMIFDQFSTMAQAAVHGLGVALLPTFSADPYLRAKQLVLASTQTTQSIGNYYLVWPEDRVETAALRSFKAWLTTQT 293
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: Transcriptional (regulator, LysR family, putative n=4 Tax=Roseobacter TaxID=2433 RepID=Q161D2_ROSDO) HSP 1 Score: 180 bits (456), Expect = 5.370e-54 Identity = 80/127 (62.99%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
ETVV VCAP ++P P DA+ IL H L+HL+TRPRGW RW + + +PPGM+FDQFSTMAQAA+HGLGVALLPTFVA+P+LN+ QL A+ H N SIG+YYLVWP+DR E L +FR+WL Q
Sbjct: 166 ETVVAVCAPSLIPTPLSDARGILSHDLMHLETRPRGWVRWLRSLDIDASLPPGMVFDQFSTMAQAAVHGLGVALLPTFVADPFLNSGQLVLASPHANQSIGSYYLVWPKDREESHSLTSFRTWLRDQ 292
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: DNA-binding (transcriptional LysR family regulator n=1 Tax=Sulfitobacter noctilucicola TaxID=1342301 RepID=A0A7W6M7K7_9RHOB) HSP 1 Score: 179 bits (455), Expect = 7.820e-54 Identity = 82/128 (64.06%), Postives = 99/128 (77.34%), Query Frame = 1
Query: 1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQT 384
ETVVPVCAP++LP P ++ +LDHPLLHL+TRP+GW+RW V + P GM+FDQFSTMAQAA+HGLGVALLPTF A+PYL +RQL A+ T SIG+Y+LVWP R EG L AFR+WL TQT
Sbjct: 166 ETVVPVCAPDLLPHPLKNPAGMLDHPLLHLETRPKGWSRWLAALEVEAEPPVGMVFDQFSTMAQAAIHGLGVALLPTFFADPYLKDRQLVLASAQTTQSIGSYFLVWPDAREEGPALTAFRTWLATQT 293 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs76122.1.1 >prot_H-canaliculatus_M_contigs76122.1.1 ID=prot_H-canaliculatus_M_contigs76122.1.1|Name=mRNA_H-canaliculatus_M_contigs76122.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=120bp MLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSback to top mRNA from alignment at H-canaliculatus_M_contigs76122:6..395+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs76122.1.1 ID=mRNA_H-canaliculatus_M_contigs76122.1.1|Name=mRNA_H-canaliculatus_M_contigs76122.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=390bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76122:6..395+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76122:6..395+ >mRNA_H-canaliculatus_M_contigs76122.1.1 ID=mRNA_H-canaliculatus_M_contigs76122.1.1|Name=mRNA_H-canaliculatus_M_contigs76122.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76122:6..395+ (Hapterophycus canaliculatus Oshoro7m male)back to top |