mRNA_H-canaliculatus_M_contigs76122.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76122.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76122.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: LysR (family transcriptional regulator n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2FDN0_9RHOB)

HSP 1 Score: 194 bits (493), Expect = 1.350e-59
Identity = 85/127 (66.93%), Postives = 104/127 (81.89%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
            ETV+PVCAP++L +P  D + IL HPLLHL+TR +GWARW   HG+ + +P GM+FDQFSTMAQAA+HG+G+ALLPTFVAEPYLN+ QL RA+ HT+DSIGTYYLVWP DR   APL AF++WL  Q
Sbjct:  166 ETVIPVCAPDLLEQPVADPRAILKHPLLHLETRQKGWARWLSAHGIDEIIPSGMMFDQFSTMAQAALHGMGIALLPTFVAEPYLNSGQLCRASTHTSDSIGTYYLVWPSDRANIAPLNAFKTWLKLQ 292          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: DNA-binding (transcriptional LysR family regulator n=8 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A2T6CG06_9RHOB)

HSP 1 Score: 187 bits (476), Expect = 5.760e-57
Identity = 88/127 (69.29%), Postives = 98/127 (77.17%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
            ETVVPVCAP++L  P  D +DILDHPLLHL+TRPRGWARW     V  D P GM+FDQFSTMAQAA+HGLGVALLPTF AEPYL + QL  A+R T  SIG+YYLVWP DR EGA L +FR WL  Q
Sbjct:  166 ETVVPVCAPDLLEAPLTDPQDILDHPLLHLETRPRGWARWLAALNVETDPPAGMMFDQFSTMAQAAIHGLGVALLPTFFAEPYLRDGQLQLASRETTQSIGSYYLVWPHDRPEGAALSSFRDWLSEQ 292          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: DNA-binding (transcriptional LysR family regulator n=3 Tax=Sulfitobacter geojensis TaxID=1342299 RepID=A0A7Y9Z2P1_9RHOB)

HSP 1 Score: 187 bits (474), Expect = 1.260e-56
Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
            ETVVPVCAPE+L  P  +A+D+L+HPLLHL+TRPRGWARW    GVT D P GM+FDQFSTMAQAA+HGLGVALLPTF AEPYL + QL  A+  T  SIG YYLVWP+ R EGA L +FR+WL  Q
Sbjct:  166 ETVVPVCAPELLSAPVIEARDMLEHPLLHLETRPRGWARWLAALGVTADPPAGMVFDQFSTMAQAAIHGLGVALLPTFFAEPYLRDGQLMLASAQTTQSIGNYYLVWPETRDEGAALTSFRNWLAGQ 292          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: HTH (lysR-type domain-containing protein n=4 Tax=root TaxID=1 RepID=A0A0F9SIQ9_9ZZZZ)

HSP 1 Score: 184 bits (468), Expect = 8.780e-56
Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQT 384
            ETV+PVC+PE+L  P ++A +IL HPLLHLDTRPRGW+RW    GVTQD P GM+FDQFSTMAQAA+HGLGVALLPTF A PYL + QL  A+  T  SIG YYLVWP+D  E A LK+F+ WL  QT
Sbjct:  166 ETVMPVCSPELLDAPLENAAEILAHPLLHLDTRPRGWSRWLSALGVTQDPPAGMVFDQFSTMAQAAVHGLGVALLPTFSAAPYLRDGQLVLASTQTTHSIGNYYLVWPEDHVETAALKSFKGWLAAQT 293          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: Transcriptional (regulator, LysR family n=14 Tax=root TaxID=1 RepID=A0A1H2RDK6_9RHOB)

HSP 1 Score: 184 bits (467), Expect = 1.240e-55
Identity = 86/129 (66.67%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQTG 387
            ETVVPVCAPE+L EP +D   IL + LLHL+TRPRGW+RW    GVTQ+ P GM+FDQFSTMAQAA+HGLGVALLPTF AEPYL + QL  A+  T  SIG YYLVWP+DR E A L++F++WL  QTG
Sbjct:  166 ETVVPVCAPELLTEPLEDPSQILRYALLHLETRPRGWSRWLSALGVTQEPPAGMMFDQFSTMAQAAVHGLGVALLPTFSAEPYLRDGQLVLASTQTTQSIGNYYLVWPEDRAETAALQSFKTWLDGQTG 294          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: Transcriptional (regulator, LysR family n=1 Tax=Roseobacter sp. (strain GAI101) TaxID=391589 RepID=B7RN59_ROSS0)

HSP 1 Score: 184 bits (466), Expect = 1.760e-55
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
            ETVVPVCAPE+L  P +DA+ IL +PLLHLDTRPRGWARW    GVT++ P GM+FDQFSTMAQAA+HGLGVALLPTF A+PYL + QL  A+  T  SIG YYLVWP++R E A L++F+SWL  Q
Sbjct:  166 ETVVPVCAPELLDAPLEDARAILSYPLLHLDTRPRGWARWLAALGVTEEPPSGMMFDQFSTMAQAAVHGLGVALLPTFSADPYLRDGQLVLASTQTTQSIGNYYLVWPEERAETAALRSFKSWLAGQ 292          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: LysR (family transcriptional regulator n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A7Y2CX59_9RHOB)

HSP 1 Score: 182 bits (462), Expect = 7.060e-55
Identity = 84/127 (66.14%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
            ETVVPVCAP++L  P ++A+DIL++PLLHL+TRPRGWARW    GV  D P GM+FDQFSTMAQAA+HGLGVALLPTF A+PYL + QLA A++ T  SIG+YYLVWP +R E A L +FR+WL  Q
Sbjct:  166 ETVVPVCAPDLLEAPLEEARDILNYPLLHLETRPRGWARWLSALGVEADPPGGMVFDQFSTMAQAAIHGLGVALLPTFFADPYLRDGQLALASQQTTQSIGSYYLVWPGERAESAALLSFRNWLEMQ 292          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: Transcriptional (regulator, LysR family n=3 Tax=Sulfitobacter TaxID=60136 RepID=A0A1I6RNX9_9RHOB)

HSP 1 Score: 181 bits (458), Expect = 2.830e-54
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQT 384
            ETVVPVCAPE+L  P     DIL +PLLHL+TRP+GWARW +  GV  + P GMIFDQFSTMAQAA+HGLGVALLPTF A+PYL  +QL  A+  T  SIG YYLVWP+DR E A L++F++WL TQT
Sbjct:  166 ETVVPVCAPELLETPLNSPADILRYPLLHLETRPKGWARWLEALGVRDEPPSGMIFDQFSTMAQAAVHGLGVALLPTFSADPYLRAKQLVLASTQTTQSIGNYYLVWPEDRVETAALRSFKAWLTTQT 293          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: Transcriptional (regulator, LysR family, putative n=4 Tax=Roseobacter TaxID=2433 RepID=Q161D2_ROSDO)

HSP 1 Score: 180 bits (456), Expect = 5.370e-54
Identity = 80/127 (62.99%), Postives = 98/127 (77.17%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQ 381
            ETVV VCAP ++P P  DA+ IL H L+HL+TRPRGW RW +   +   +PPGM+FDQFSTMAQAA+HGLGVALLPTFVA+P+LN+ QL  A+ H N SIG+YYLVWP+DR E   L +FR+WL  Q
Sbjct:  166 ETVVAVCAPSLIPTPLSDARGILSHDLMHLETRPRGWVRWLRSLDIDASLPPGMVFDQFSTMAQAAVHGLGVALLPTFVADPFLNSGQLVLASPHANQSIGSYYLVWPKDREESHSLTSFRTWLRDQ 292          
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Match: DNA-binding (transcriptional LysR family regulator n=1 Tax=Sulfitobacter noctilucicola TaxID=1342301 RepID=A0A7W6M7K7_9RHOB)

HSP 1 Score: 179 bits (455), Expect = 7.820e-54
Identity = 82/128 (64.06%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 ETVVPVCAPEMLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFSTMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQDRTEGAPLKAFRSWLGTQT 384
            ETVVPVCAP++LP P ++   +LDHPLLHL+TRP+GW+RW     V  + P GM+FDQFSTMAQAA+HGLGVALLPTF A+PYL +RQL  A+  T  SIG+Y+LVWP  R EG  L AFR+WL TQT
Sbjct:  166 ETVVPVCAPDLLPHPLKNPAGMLDHPLLHLETRPKGWSRWLAALEVEAEPPVGMVFDQFSTMAQAAIHGLGVALLPTFFADPYLKDRQLVLASAQTTQSIGSYFLVWPDAREEGPALTAFRTWLATQT 293          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76122.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
LysR1.350e-5966.93family transcriptional regulator n=1 Tax=Sulfitoba... [more]
DNA-binding5.760e-5769.29transcriptional LysR family regulator n=8 Tax=Sulf... [more]
DNA-binding1.260e-5668.50transcriptional LysR family regulator n=3 Tax=Sulf... [more]
HTH8.780e-5666.41lysR-type domain-containing protein n=4 Tax=root T... [more]
Transcriptional1.240e-5566.67regulator, LysR family n=14 Tax=root TaxID=1 RepID... [more]
Transcriptional1.760e-5566.93regulator, LysR family n=1 Tax=Roseobacter sp. (st... [more]
LysR7.060e-5566.14family transcriptional regulator n=1 Tax=Sulfitoba... [more]
Transcriptional2.830e-5465.63regulator, LysR family n=3 Tax=Sulfitobacter TaxID... [more]
Transcriptional5.370e-5462.99regulator, LysR family, putative n=4 Tax=Roseobact... [more]
DNA-binding7.820e-5464.06transcriptional LysR family regulator n=1 Tax=Sulf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76122contigH-canaliculatus_M_contigs76122:6..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog83219.PM02_10925
PFAMsHTH_1,LysR_substrate
Model size390
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-50
EggNOG OGsCOG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,3ZVA3@60136|Sulfitobacter
Descriptiontranscriptional regulator
Cds size360
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.3273065-UTR-H-canaliculatus_M_contigs76122:5..351696854099.3273065-UTR-H-canaliculatus_M_contigs76122:5..35Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76122 6..35 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.3416312-CDS-H-canaliculatus_M_contigs76122:35..3951696854099.3416312-CDS-H-canaliculatus_M_contigs76122:35..395Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76122 36..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76122.1.1prot_H-canaliculatus_M_contigs76122.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76122 36..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76122.1.1

>prot_H-canaliculatus_M_contigs76122.1.1 ID=prot_H-canaliculatus_M_contigs76122.1.1|Name=mRNA_H-canaliculatus_M_contigs76122.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=120bp
MLPEPAQDAKDILDHPLLHLDTRPRGWARWFKDHGVTQDVPPGMIFDQFS
TMAQAAMHGLGVALLPTFVAEPYLNNRQLARAARHTNDSIGTYYLVWPQD
RTEGAPLKAFRSWLGTQTG*
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mRNA from alignment at H-canaliculatus_M_contigs76122:6..395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76122.1.1 ID=mRNA_H-canaliculatus_M_contigs76122.1.1|Name=mRNA_H-canaliculatus_M_contigs76122.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=390bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76122:6..395+ (Hapterophycus canaliculatus Oshoro7m male)
GAAACCGTTGTACCTGTGTGTGCCCCAGAAATGTTGCCGGAACCTGCACA GGACGCAAAAGACATTCTCGATCATCCGCTTTTGCATCTGGACACACGTC CGCGCGGTTGGGCGCGTTGGTTCAAGGACCACGGTGTGACACAAGACGTG CCTCCGGGGATGATTTTTGACCAGTTTTCAACCATGGCCCAAGCCGCGAT GCACGGTCTGGGTGTCGCCTTGTTGCCGACATTTGTCGCAGAGCCCTATC TGAACAACCGCCAGCTTGCCCGTGCGGCACGCCACACCAACGACAGCATC GGCACCTATTATCTGGTCTGGCCACAAGATCGTACCGAAGGCGCCCCCCT CAAGGCATTTCGCAGCTGGCTTGGGACGCAAACCGGTTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76122:6..395+

>mRNA_H-canaliculatus_M_contigs76122.1.1 ID=mRNA_H-canaliculatus_M_contigs76122.1.1|Name=mRNA_H-canaliculatus_M_contigs76122.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76122:6..395+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTGCCGGAACCTGCACAGGACGCAAAAGACATTCTCGATCATCCGCT
TTTGCATCTGGACACACGTCCGCGCGGTTGGGCGCGTTGGTTCAAGGACC
ACGGTGTGACACAAGACGTGCCTCCGGGGATGATTTTTGACCAGTTTTCA
ACCATGGCCCAAGCCGCGATGCACGGTCTGGGTGTCGCCTTGTTGCCGAC
ATTTGTCGCAGAGCCCTATCTGAACAACCGCCAGCTTGCCCGTGCGGCAC
GCCACACCAACGACAGCATCGGCACCTATTATCTGGTCTGGCCACAAGAT
CGTACCGAAGGCGCCCCCCTCAAGGCATTTCGCAGCTGGCTTGGGACGCA
AACCGGTTAA
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