mRNA_H-canaliculatus_M_contigs7611.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7611.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7611.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7611.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7611contigH-canaliculatus_M_contigs7611:63..3693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size246
Hectar predicted targeting categoryother localisation
Exons4
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854098.9763052-CDS-H-canaliculatus_M_contigs7611:62..1211696854098.9763052-CDS-H-canaliculatus_M_contigs7611:62..121Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7611 63..121 +
1696854098.9906049-CDS-H-canaliculatus_M_contigs7611:1728..18031696854098.9906049-CDS-H-canaliculatus_M_contigs7611:1728..1803Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7611 1729..1803 +
1696854099.00209-CDS-H-canaliculatus_M_contigs7611:3166..32211696854099.00209-CDS-H-canaliculatus_M_contigs7611:3166..3221Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7611 3167..3221 +
1696854099.016166-CDS-H-canaliculatus_M_contigs7611:3636..36931696854099.016166-CDS-H-canaliculatus_M_contigs7611:3636..3693Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7611 3637..3693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7611.1.1prot_H-canaliculatus_M_contigs7611.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7611 63..3693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7611.1.1

>prot_H-canaliculatus_M_contigs7611.1.1 ID=prot_H-canaliculatus_M_contigs7611.1.1|Name=mRNA_H-canaliculatus_M_contigs7611.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=82bp
QEQQQQQQQQQQQQQQQQQPTKKKHRAQQQQRQRQQRRRRRRRQHQTGKQ
SVPDLRGRAKQQHQQQQQQQQQQQQQQQQQR*
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mRNA from alignment at H-canaliculatus_M_contigs7611:63..3693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7611.1.1 ID=mRNA_H-canaliculatus_M_contigs7611.1.1|Name=mRNA_H-canaliculatus_M_contigs7611.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3631bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7611:63..3693+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCCGTAGCACCAGCAATGAACAAGACTAAAACATCAACATGACC
ATGATGACCATGACTATCATAATCAACAACAGCAACAACAACAAGCACAC
CAGTAGAAAAGCCACGTCACACTCTCCCTCACCTGGCCTGGCTCGGTCGA
TAAGGTCCGCCAGGAGGATGACATCCTTGTACCTAGGCACACGCCCCGGT
GGCACGCTGCCGGGCGATTCCTGCACCAACGCCGGCACCACGAGCAAGAC
AACGACAAAAAAAAAACGGCGACGCAAGGAAGGAACAAACACAGGTTGGA
GGATCTCGGACACGTTTTCGTCGTTCTCGCGTCCGCTGCCGCAAGCAGAG
AGGCGCACAAAGCTTCGCCTGCCTGCAAGGGACTGGGCAGAAGACGAAGA
CGAAGGTGAAGGTGGAGGTGGAGGCGAAGGTGGAGGCGTGCAGGGGAAGG
GGGTAGGGGATGGTGCGACTCTGCGCCGGACGACGGCGACAAGGGCCTCC
GAGCTGCTCATCGCCGGTTTGGCTTACTGTGCCCTCGCGAACAGGCGGAT
CGATTTCGTCTTCTCACATGCGTGCGACAGGAAATGCATGGCGGAAAAAA
ACGGGAACAAATGTCTGCGCGACGCGATTGGCTCCTAAAGAGTCTATGCA
AGACTGAACAGACGAACAAGGGTCGCAAAGTGAACTGGACAGACGGGTTC
TGCATCACCCCGGTCTGCGCCCATCACTCCATCACCTGGAGGGTGATCTT
TTGGTAGTTGCGGTACATGGTCTGTTCCTGGTCGATCTTGAACGAGTCCT
CCGCCTGGCACCCGGGGCAGGAGCCTGGCTTGGCCTCGGCCCCGCTGCCG
CTCACTCGGAATGGTCCCAGGACGGTCTGGCATTTCTGTGGATGGCGTGG
TTCGCAGTTCGTCGATCGATCGGAGAAAGCGGACGCGAAGGCGAAGGCGA
CGGCCCGACGGGAAGGGAAAGAGAGGGGTTCGTCAGACAGAGGGGTGCGT
CAGACAGAGGGGTGCGTCTCTCGGGCGATGGGTGGATAGGTCCAAGTACG
GCCTGGCGCCGCAGTGGATCGGGTGAATGGCTGGTCGGCTGATCGGAAAA
CGCAAAGGCGGCGGTGGCAAGAAGGGGAGAGCATAGACGGCGGTGGGAGG
GGGGCGGGCGGGGGGGTCTTCTTGGGGATAAGAACGCCTCCAGCTTGTCA
CGTCCCCGTACAACAGGGCGGGGTGGGTCTCCTTGAGGGTGGTAACGCCT
CCAGCTTTTCACGTCGGCATAACAGAAGGCATTGCAAAGAGACCGCCAGT
CGAACGCTCAAGGAGGATGCGGTGCGGAGAGGCTGAAAAGCTTCAGCCGC
GAGGACATTTTCGGACCGCCGTGCGTTTGGTCAACACGCAACATGGCGGT
GCCTGCCCAACGTCCCAGGCACACGTCGCCGACAACCTACCAACAAACAC
CACATCTTGACACGCAAGGTAGCACGACACCGCTAGCCGCAAGAGAAAGC
AGTGCGCCCTTCACGTCACTTTTCGGAAGAACTTGTTCGCGTGGTCGTAA
AAAAGACAAAAAAAAACAAAAAACGAAAACGACAGCAGCAGCAGCAACAG
CAGCAGCAACAACGAGAACAAAAAAAAAACACAGAGCACAACAACAACAA
CGACAACGACAACAACGACGACGACGGCGACGACGACAGCAGTAGGTTGC
ACAAGAGCCATCACGACGTCGGCGTAAAAACAACACGAGCGAGAGCAAGA
GCATCACCCACAAGGCACACAGCACTTGACACGGACGACAACTCACGTAG
CAGCGGTACTTGACTAGCTTCAGCTGCGGGAAGACTCCAGAGCGCCGGGT
CACCACCCCGTGGACCTTGATCAGCGCGTGCAGATGAACCTGCCTCAGTC
GAACAGTGGAACAGTCGAAGAGAACACGAAGGGGGGGGGAGGGGGCGTTC
ACGTACCAGTATTGCTTTAAAAAACGCGGAGATTTTCCGCTGCGAGAACT
CTAGGTTGGAGCCGTTATGAGAAGGAGCGGCCGTCCACGTGATGCAATGT
AAGGGATAGCCTCTCTCTCTCCCTCTCTCTCTCTCTCTGGTCCTGTCTAC
CTATGCCCGCCCGTGCGTCTGCCTCTGTCTGTCTGTACCTGTCTGTCTGT
ACCTGTCTCTCTCCCTCCTTTCCTTTTTCCCGTCTCTTTCCTTCCGCTTG
TCGTGGAATTCCCCTCTCCTCTCTGGTTGCCGCTCCTCCATCCGCCCGTA
CACCCATTCCTCCCTTCCTATCCCAGTCCCTCTTGGGTGTCTTCGACGTC
CAGCCCAACTTGTCTCTCTCCCCCTCCCTCCCTCCCTCTCTCCCCCCCTC
CCTTCACGACACCTCTACACACCACGCGCATGACAAGGGCTGTGTGGCCA
CTGAGCTTCTCGCCTTGCCCAACACGTCGACGAAACCGAAAACTCGTGTC
CTGACAGCCCGCTCTGCTAGGCTTCGCTAGGCCTCGCACCTCTCTTAGGT
CCCTGAGCTTGTCGACGATGGGCACGTGCGTGATGTGCACGTGGACCTCA
TCGTGGATGCGGTGGTACTCCGGAAACGCTCTGAGGACTACGGCGTTCGT
CACCTGTAGGGAGGGGAGGAGAAAACGGCGCGAGCGACAAGCAAGCCACA
ACGTGTATCGAGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCA
GGCAGGGAGGCAGGCAGGGAGGCAGGCAGGCAGGCAGGGAGGCACGTGAG
CAATCAAGGTCACGGGGATGGGCAGAGGAGAGGGACACCGACCAGCTACA
TGCGCAGCGACTGAAGCAAGGAGGCAAAGAATTCGGCCCACCAAAAAGGT
CACCACCGAGGACAAAGAGCAGGCTTCGTTTTTTCCTGAAGAAGCTGGAT
AGTGTTGCTTGTTGCTGAGAACGCTTAGAACGCTGAGCACGCTGAGCGTG
CTCTTCGCGAGCGAGGACGTGGATGCACGAAGCGGGGCGTCGCTGTCCTT
CCCCGTGGCACTCGCGAACGGGTGCCGCCCTCAACGCAACATGTTACCCA
ATAGCCAGACGGGTAAACAATCAGTCCCGGACTTGCGTGGTCGTGCCAAA
CAGCAGCATGTGCGCAGCACCGATCTTCAGTACTTGTCGCTACCCATTAC
AAATAGGTGGCACCGAAGGGACCACAACCACTCGTTGTTCATCGAAGAGA
GAACCGGCGAACAAGTCATTAAATCACCTCGTCCATGATCTCCAGCATGT
CCTTCGGCACGTCCGCTAACCAGATGGCCAAGATGGGCACGGCCTTGGAC
AGGTCGATGTAGCTTACCTTCGGAGGGAAATGACAGAAAAAAAGATAGCA
ACCTCAGCCCTGAATCGACAAATCGACGAATCATCCACATTCAGGGCGCA
CCTCTTTTCTAGAGGTCACGTGTACAAGGAAATGAAAGCTGGAACAGAGC
AGCAGCACAAGCGATCGAACGTTCGCAGCAGCGAAGTCATCGCTCATCAA
CAGTAACAACAGTAGAGGCGATAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7611:63..3693+

>mRNA_H-canaliculatus_M_contigs7611.1.1 ID=mRNA_H-canaliculatus_M_contigs7611.1.1|Name=mRNA_H-canaliculatus_M_contigs7611.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=246bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7611:63..3693+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCCAACAAAAAAAAAACACAGAGCACAACAACAACAACGACAAC
GACAACAACGACGACGACGGCGACGACGACAGCACCAGACGGGTAAACAA
TCAGTCCCGGACTTGCGTGGTCGTGCCAAACAGCAGCATCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCTAG
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