mRNA_H-canaliculatus_M_contigs75989.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75989.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75989.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZW2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.540e-29
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 MTVFTRDQAAQDTYNPLLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQV 174
            MTVFTR QAAQDTYNPLL+GCRSVDNYERIEFIDEGAYGKVYCALNK TGEVVALKQV
Sbjct:  552 MTVFTRHQAAQDTYNPLLYGCRSVDNYERIEFIDEGAYGKVYCALNKATGEVVALKQV 609
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: Cyclin-dependent (kinase G-2-like isoform X4 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DJE8_TRIWF)

HSP 1 Score: 61.2 bits (147), Expect = 1.630e-10
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   49 LLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQVGGEREAE 195
            +L GCRSVD +ER+  IDEG YG VY A +K TGE+VALK+V  E+E E
Sbjct:   43 MLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKERE 91
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIE6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.780e-10
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   34 DTYNPLLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQV 174
            D +NPL +GCR+V++Y+R++ + EGAYG VY A NK TGE+VALK+V
Sbjct:   27 DVHNPLWWGCRNVNHYDRLDRLQEGAYGVVYKAKNKKTGELVALKKV 73
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Populus alba TaxID=43335 RepID=A0A4U5QG42_POPAL)

HSP 1 Score: 60.8 bits (146), Expect = 4.460e-10
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   49 LLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQVGGEREAE 195
            +L GCRSVD +ER+  IDEG YG VY A  K TGE+VALK+V  E+E E
Sbjct:    1 MLQGCRSVDEFERLNKIDEGTYGVVYRAREKKTGEIVALKKVKMEKERE 49
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: LOW (QUALITY PROTEIN: cyclin-dependent kinase G-2-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929F6E4)

HSP 1 Score: 63.2 bits (152), Expect = 4.770e-10
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   16 RDQAAQDTYNP------LLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQVGGEREAE 195
            RD  +  T  P      +L GCRSVD +ER+  IDEG YG VY A +K TGEVVALK+V  E+E E
Sbjct:   70 RDXESPKTAQPPQRCINMLLGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEVVALKKVKMEKEXE 135
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: Protein (kinase 1, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KHI7_PERM5)

HSP 1 Score: 63.2 bits (152), Expect = 4.790e-10
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   46 PLLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQV 174
            P+L GCRSVDNYE++  IDEG YG VY A  KTTG++ ALKQV
Sbjct:   55 PVLDGCRSVDNYEKLNRIDEGTYGVVYRAREKTTGKICALKQV 97
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: cyclin-dependent (kinase G-2-like isoform X2 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019222645)

HSP 1 Score: 63.2 bits (152), Expect = 4.850e-10
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   49 LLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQVGGEREAE 195
            +L GCRSVD +ER+  IDEG YG VY A NK TGE+VALK+V  E+E E
Sbjct:  397 MLQGCRSVDEFERLNKIDEGTYGVVYRARNKKTGEIVALKKVKMEKERE 445
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: cyclin-dependent (kinase G-2-like isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC7DE4E)

HSP 1 Score: 63.2 bits (152), Expect = 4.860e-10
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   49 LLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQVGGEREAE 195
            +L GCRSVD +ER+  IDEG YG VY A NK TGE+VALK+V  E+E E
Sbjct:  373 MLQGCRSVDEFERLNKIDEGTYGVVYRAKNKKTGEIVALKKVKMEKERE 421
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: Cyclin-dependent (kinase n=12 Tax=Phaseoleae TaxID=163735 RepID=I1KRZ8_SOYBN)

HSP 1 Score: 63.2 bits (152), Expect = 4.860e-10
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   31 QDTYNPLLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQVGGEREAE 195
            Q T+N +L GCRSVD +ER+  IDEG YG VY A +K TGE+VALK+V  E+E E
Sbjct:  384 QRTFN-MLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKE 437
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BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Match: Cyclin-dependent (kinase n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RR29_9SPER)

HSP 1 Score: 63.2 bits (152), Expect = 4.880e-10
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   49 LLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTGEVVALKQVGGEREAE 195
            +L GCRSVD +ER+  IDEG YG VY A NK TGE+VALK+V  E+E E
Sbjct:  532 MLQGCRSVDEFERLNKIDEGTYGVVYRARNKKTGEIVALKKVKMEKERE 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75989.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein7.540e-2994.83kinase domain-containing protein n=2 Tax=Ectocarpu... [more]
Cyclin-dependent1.630e-1061.22kinase G-2-like isoform X4 n=1 Tax=Tripterygium wi... [more]
Hypothetical1.780e-1059.57protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Protein4.460e-1061.22kinase domain-containing protein n=1 Tax=Populus a... [more]
LOW4.770e-1053.03QUALITY PROTEIN: cyclin-dependent kinase G-2-like ... [more]
Protein4.790e-1067.44kinase 1, putative n=1 Tax=Perkinsus marinus (stra... [more]
cyclin-dependent4.850e-1063.27kinase G-2-like isoform X2 n=2 Tax=Hibiscus syriac... [more]
cyclin-dependent4.860e-1063.27kinase G-2-like isoform X1 n=2 Tax=Telopea specios... [more]
Cyclin-dependent4.860e-1060.00kinase n=12 Tax=Phaseoleae TaxID=163735 RepID=I1KR... [more]
Cyclin-dependent4.880e-1063.27kinase n=1 Tax=Wollemia nobilis TaxID=56998 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75989contigH-canaliculatus_M_contigs75989:327..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCL8
PFAMsPkinase
Model size198
Max annot lvl2759|Eukaryota
KEGG koko:K02449,ko:K08818
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000082,GO:0000086,GO:0000166,GO:0000226,GO:0000278,GO:0000302,GO:0000307,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006325,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007093,GO:0007098,GO:0007099,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009966,GO:0009987,GO:0010033,GO:0010035,GO:0010389,GO:0010468,GO:0010564,GO:0010646,GO:0010948,GO:0012505,GO:0015030,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016604,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019904,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030330,GO:0030332,GO:0030554,GO:0031023,GO:0031410,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035556,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0042127,GO:0042221,GO:0042493,GO:0042770,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044839,GO:0044843,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051298,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070925,GO:0071156,GO:0071158,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0097124,GO:0097159,GO:0097366,GO:0097367,GO:0097472,GO:0097708,GO:0098534,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902170,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902531,GO:1902554,GO:1902749,GO:1902806,GO:1902807,GO:1902911,GO:1903047,GO:1990234,GO:2000045,GO:2000134
Exons1
Evalue1.23e-29
EggNOG OGsKOG0663@1|root,KOG0663@2759|Eukaryota
EC2.7.11.22
Descriptioncyclin-dependent protein serine/threonine kinase activity
Cds size198
COG categoryT
BRITEko00000,ko01000,ko01001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854097.5919333-CDS-H-canaliculatus_M_contigs75989:326..5241696854097.5919333-CDS-H-canaliculatus_M_contigs75989:326..524Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75989 327..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75989.1.1prot_H-canaliculatus_M_contigs75989.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75989 327..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75989.1.1

>prot_H-canaliculatus_M_contigs75989.1.1 ID=prot_H-canaliculatus_M_contigs75989.1.1|Name=mRNA_H-canaliculatus_M_contigs75989.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=66bp
MTVFTRDQAAQDTYNPLLFGCRSVDNYERIEFIDEGAYGKVYCALNKTTG
EVVALKQVGGEREAEE
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mRNA from alignment at H-canaliculatus_M_contigs75989:327..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75989.1.1 ID=mRNA_H-canaliculatus_M_contigs75989.1.1|Name=mRNA_H-canaliculatus_M_contigs75989.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75989:327..524+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACGGTGTTCACGAGGGACCAGGCGGCGCAGGACACGTACAACCCTTT
GCTGTTCGGCTGCCGGAGCGTGGACAACTACGAGCGGATCGAGTTCATCG
ACGAGGGGGCGTACGGGAAGGTCTACTGCGCGCTCAACAAGACCACCGGG
GAGGTGGTCGCGCTGAAGCAGGTGGGAGGAGAGAGGGAGGCGGAAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75989:327..524+

>mRNA_H-canaliculatus_M_contigs75989.1.1 ID=mRNA_H-canaliculatus_M_contigs75989.1.1|Name=mRNA_H-canaliculatus_M_contigs75989.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75989:327..524+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACGGTGTTCACGAGGGACCAGGCGGCGCAGGACACGTACAACCCTTT
GCTGTTCGGCTGCCGGAGCGTGGACAACTACGAGCGGATCGAGTTCATCG
ACGAGGGGGCGTACGGGAAGGTCTACTGCGCGCTCAACAAGACCACCGGG
GAGGTGGTCGCGCTGAAGCAGGTGGGAGGAGAGAGGGAGGCGGAAGAG
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