mRNA_H-canaliculatus_M_contigs75966.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75966.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75966.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 4.440e-66
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T +VYGS+AGGDADELRLLSTNETFINLRAHGGSLDFV TKVFSWDT+TNSPD DETDGRSYISAISEI+TD DETC G AKNTMGEARMDIESSE+ YLG+WDSESYGLTWKVR
Sbjct:  116 TLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVR 230
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BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: MEP22b (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 4.550e-66
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 1 
Query:   10 VYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            VYGS+AGGDADELRLLST+ETFINLRAHGGSLDFV TKVFSWDT+TNSPD DETDGRSYISAISEI+TD DETC G AKNTMGEARMDIESSE+ YLG+WDSESYGLTWKVR
Sbjct:   13 VYGSEAGGDADELRLLSTSETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVR 124
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 7.940e-65
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T +VYGS+AGGDADELRLLSTNETFINLRAHGGSLDFV TKVFSWDT+TNSPD DETDGRSYISAISEI+TD DETC G AKNTMGEARMDIESSE+ YLG+WDSESYGLTWKVR
Sbjct:  116 TLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVR 230
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BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: MEP5a (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.010e-62
Identity = 97/115 (84.35%), Postives = 105/115 (91.30%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T +VYG+  GGDADELRLLST +T+INLRAHGGSLDFVGTKVFSWDT+TNSPD DETDGRSYISAISEI+TD DETC G AKNTMGEARMDIE+SE+ YLGF DSESYGLTWKVR
Sbjct:  119 TLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVR 233
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: Mannuronan (C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 4.370e-62
Identity = 96/115 (83.48%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T +VYG+D GGDADELRLLST++T+INLRA+GGSLDFVGTKVFSWDT+TNSPDV ETDGRSYISA+SEIVTD DE+C G AKNTMGEARMDIE+SE+ YLGF DSESYGLTWKVR
Sbjct:  120 TLKVYGTDEGGDADELRLLSTSDTYINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDGRSYISAVSEIVTDEDESCEGHAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVR 234
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.760e-62
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T +VYG+D GGDADELRLLST+ET+INLRAHGGSLDFVGTKVFSWDT+TNSPD DETDGRSYISA+SEIVTD DETC G AKNTMGEARMDIE+SE+ YLGF DSESYGLTWKVR
Sbjct:  120 TLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVR 234
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.390e-53
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T +V+G+ AGGDADELRLLST++TFINLRAHGGSLDF+ TKVF+WDT+ N PD DE DGRSY+SA+SE++TD  +TC G AKN MGEARMDIE SEM YLG+  SESYGLTWKVR
Sbjct:  113 TLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVR 227
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: Mannuronan (C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.180e-52
Identity = 84/115 (73.04%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T QV+G  AGGDADELRLLST++TFI+LRA+GGSLDF+ TKVF+WDT+ N+PD DE+DGRSYISA+SE++TD  +TC G AKN MGEARMDIE+SEMAYLG+  +E+YGLTWKVR
Sbjct:   87 TLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVR 201
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 5.090e-49
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLST-------NETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T +V+G+ +GG ADELRL ST       N T+INLRAHGGSLDF  TKVF WDTT NS D+DETDGRSYISA+SEIV DP +TC G AKNTMGEARMDI +SEM Y+GF DSESYGLTWKVR
Sbjct:  198 TLKVWGNGSGGYADELRLKSTPPTEDGGNGTYINLRAHGGSLDFEHTKVFGWDTTNNSYDMDETDGRSYISAVSEIVLDPTQTCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVR 319
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Match: Mannuronan (C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 169 bits (429), Expect = 3.380e-48
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTNSPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYLGFWDSESYGLTWKVR 345
            T QV+G  AGG ADELRLLST++ FINLRAHGGSLDFV TKVF+WDT+ N    D++ GRSYISA+SE++TD  + C G AK  MGEARMDIE SEMAYLG++ SESYGLTWKVR
Sbjct:  113 TLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVR 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75966.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Mannuronan4.440e-6688.70C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
MEP22b4.550e-6689.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mannuronan7.940e-6588.70C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID... [more]
MEP5a4.010e-6284.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mannuronan4.370e-6283.48C-5-epimerase N-terminal n=1 Tax=Ectocarpus silicu... [more]
Mannuronan5.760e-6286.09C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Mannuronan2.390e-5373.91C-5-epimerase n=1 Tax=Laminaria digitata TaxID=803... [more]
Mannuronan2.180e-5273.04C-5-epimerase (Fragment) n=1 Tax=Laminaria digitat... [more]
Mannuronan5.090e-4972.13C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Mannuronan3.380e-4870.43C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75966contigH-canaliculatus_M_contigs75966:131..478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LC73
PFAMsWSC
Model size348
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.95e-29
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size348
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854097.3330064-CDS-H-canaliculatus_M_contigs75966:130..4781696854097.3330064-CDS-H-canaliculatus_M_contigs75966:130..478Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75966 131..478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75966.1.1prot_H-canaliculatus_M_contigs75966.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75966 131..478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75966.1.1

>prot_H-canaliculatus_M_contigs75966.1.1 ID=prot_H-canaliculatus_M_contigs75966.1.1|Name=mRNA_H-canaliculatus_M_contigs75966.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=116bp
TTQVYGSDAGGDADELRLLSTNETFINLRAHGGSLDFVGTKVFSWDTTTN
SPDVDETDGRSYISAISEIVTDPDETCAGMAKNTMGEARMDIESSEMAYL
GFWDSESYGLTWKVR*
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mRNA from alignment at H-canaliculatus_M_contigs75966:131..478-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75966.1.1 ID=mRNA_H-canaliculatus_M_contigs75966.1.1|Name=mRNA_H-canaliculatus_M_contigs75966.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75966:131..478- (Hapterophycus canaliculatus Oshoro7m male)
ACCACGCAGGTGTACGGGTCCGACGCCGGCGGAGACGCCGACGAGCTCCG
ACTGCTCAGCACCAACGAAACCTTCATCAACCTCAGGGCCCACGGCGGGA
GCCTAGACTTCGTAGGCACCAAGGTCTTCTCGTGGGACACGACGACCAAC
TCCCCCGACGTGGACGAGACGGACGGCCGGTCCTACATAAGCGCCATCTC
GGAGATCGTCACCGACCCGGACGAGACGTGCGCCGGCATGGCCAAGAACA
CCATGGGAGAAGCCCGAATGGACATCGAGAGCAGCGAGATGGCTTACCTC
GGCTTCTGGGACAGCGAGAGCTACGGATTGACCTGGAAGGTGCGTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75966:131..478-

>mRNA_H-canaliculatus_M_contigs75966.1.1 ID=mRNA_H-canaliculatus_M_contigs75966.1.1|Name=mRNA_H-canaliculatus_M_contigs75966.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75966:131..478- (Hapterophycus canaliculatus Oshoro7m male)
ACCACGCAGGTGTACGGGTCCGACGCCGGCGGAGACGCCGACGAGCTCCG
ACTGCTCAGCACCAACGAAACCTTCATCAACCTCAGGGCCCACGGCGGGA
GCCTAGACTTCGTAGGCACCAAGGTCTTCTCGTGGGACACGACGACCAAC
TCCCCCGACGTGGACGAGACGGACGGCCGGTCCTACATAAGCGCCATCTC
GGAGATCGTCACCGACCCGGACGAGACGTGCGCCGGCATGGCCAAGAACA
CCATGGGAGAAGCCCGAATGGACATCGAGAGCAGCGAGATGGCTTACCTC
GGCTTCTGGGACAGCGAGAGCTACGGATTGACCTGGAAGGTGCGTTAG
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