mRNA_H-canaliculatus_M_contigs75942.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75942.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75942.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Winogradskyella algicola TaxID=2575815 RepID=UPI0014863E79)

HSP 1 Score: 256 bits (654), Expect = 6.220e-81
Identity = 132/177 (74.58%), Postives = 149/177 (84.18%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFNTEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            DGDGD DALIGY +   +G  TI+IYYNQYIESGTMTVSW++DTVTVN GN  LFVAAFADV+DDGTL++IKSD   GDVA+Y K K+G S ETIISD++IIDRPAVVAVADLDND+YNDVI+TDGG+ +DA+IWFESTD G FN EALI DNNYQ YGITI D D DGD DIA IG
Sbjct:  200 DGDGDQDALIGYVDGTTSG--TIEIYYNQYIESGTMTVSWIKDTVTVNSGNPFLFVAAFADVNDDGTLDIIKSDNVSGDVAWYSKTKNGPSIETIISDDSIIDRPAVVAVADLDNDTYNDVILTDGGSANDAIIWFESTDIGTFNPEALINDNNYQHYGITIADLDGDGDKDIATIG 374          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Flavobacteriales bacterium 33_180_T64 TaxID=1856290 RepID=A0A1Z7ZS37_9FLAO)

HSP 1 Score: 249 bits (637), Expect = 2.340e-78
Identity = 121/177 (68.36%), Postives = 149/177 (84.18%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFNTEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            D DGDLDALIG+ + A    GTI+IYYNQYIESGTMTVSW++DTVTV+  N  LFVAAFAD++DDGTLE++KSD + G+VA+Y KIK+G STET+IS+ ++I RPAVV V DLDND +NDVI+TDG + DDA+IWFESTD GG NTEALI D+NYQ+YG+T+ DFD DGD DIA++G
Sbjct:  199 DNDGDLDALIGFDDGAGGTSGTIEIYYNQYIESGTMTVSWIKDTVTVDSSNPYLFVAAFADINDDGTLEIVKSDNSSGEVAWYSKIKNGVSTETMISNASLITRPAVVMVTDLDNDGFNDVILTDGASGDDAIIWFESTDMGGLNTEALIADHNYQLYGVTVGDFDADGDKDIASVG 375          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: T9SS (type A sorting domain-containing protein n=2 Tax=Hanstruepera ponticola TaxID=2042995 RepID=UPI000CF14E20)

HSP 1 Score: 195 bits (496), Expect = 3.120e-57
Identity = 96/178 (53.93%), Postives = 132/178 (74.16%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFN-TEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            DGD D+D +IG+  T     GTI+IYYNQYIESGT TVSW++D VTV+ GN+      FADV++DGT++V+K D + GDV +++KIK+GAST   IS+ +IIDRP  +A+AD+D D++NDVI+TD G  DDA+IWF+  +    + T  LI D+NYQ + IT++D+D DGDLDIA +G
Sbjct:  209 DGDTDMDVVIGFYNT-----GTIEIYYNQYIESGTSTVSWIKDAVTVDSGNVYFLATKFADVNNDGTMDVVKVDNSTGDVEWFNKIKNGASTANTISNSSIIDRPGAIAIADIDGDTFNDVILTDSGVADDAIIWFKGANNASPSATPTLIEDHNYQNFAITVDDYDGDGDLDIAFLG 381          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Hanstruepera neustonica TaxID=1445657 RepID=A0A2K1DY03_9FLAO)

HSP 1 Score: 178 bits (452), Expect = 1.000e-50
Identity = 90/178 (50.56%), Postives = 125/178 (70.22%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFN-TEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            DGD D+DA++G+  +     GTI+IYYNQYIESGT TVSW++D VTV+ GN       FADV++DGT++V+K D   G+V +Y+K  +G+S    IS   II RP  +A+AD+D D++NDVI+TD G  DDA+IWF+  +    + T  LI +NNYQ + IT++D+D DGDLDIA +G
Sbjct:  209 DGDTDMDAVVGFYNS-----GTIEIYYNQYIESGTNTVSWVKDAVTVDSGNSYFLATKFADVNNDGTMDVVKVDNVTGEVEWYNKTINGSSVANTISTSAIIARPGAIAIADIDGDTFNDVILTDSGVADDAIIWFKGANNASPSATPTLIDNNNYQNFAITVDDYDADGDLDIAFLG 381          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y2ZTD9_9FLAO)

HSP 1 Score: 176 bits (447), Expect = 4.860e-50
Identity = 94/178 (52.81%), Postives = 129/178 (72.47%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFE-STDTGGFNTEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            DGD DLD L+GY  +       I+IYYNQYIE+G+ T  +++DTVTV+ G   L    F DV++DG ++V+K D + GDV +Y KIK+GAST  +ISDETIIDRP  VA+AD+DND+YNDVI+TDGG+VD A+IWF+ +++T    T     D+N+Q++ ++I+DFD DG LDIA  G
Sbjct:  206 DGDTDLDILVGYYSSG------IEIYYNQYIETGSAT--FIKDTVTVDSGFSYLIQTIFGDVNNDGIMDVVKVDNSSGDVEWYSKIKNGASTAYMISDETIIDRPGAVAIADVDNDTYNDVILTDGGSVDTALIWFKGASNTSPSTTPVFEDDSNHQLFSLSIDDFDYDGYLDIAYTG 375          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Psychroserpens sp. XSD401 TaxID=2855840 RepID=UPI001E4989D6)

HSP 1 Score: 176 bits (446), Expect = 7.230e-50
Identity = 91/181 (50.28%), Postives = 125/181 (69.06%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDGNLSLFVAAF---ADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFN-TEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            DGD DLDA++ Y      G  +I+I+YNQYIESG+  V+W++DTVTV+               DV++DG L ++  D   GDV +YDK+K+GAST   ISD++IIDRPAV  VAD++ND  NDV++TDGG+VDDA+IWF+  D    + T  L+ DNN+QMY  T++D+D DGD DIA++G
Sbjct:  204 DGDTDLDAVVTYY-----GNQSIEIFYNQYIESGSTAVTWIKDTVTVDXXXXXXXXXXXXXXGDVNNDGNLNIVMVDNFSGDVVWYDKVKNGASTANAISDDSIIDRPAVAVVADINNDGENDVLLTDGGSVDDAIIWFQGADNAAPSATPQLVADNNFQMYDFTVDDYDGDGDKDIASVG 379          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Subsaxibacter sp. CAU 1640 TaxID=2933271 RepID=UPI0020032B38)

HSP 1 Score: 175 bits (443), Expect = 1.850e-49
Identity = 89/178 (50.00%), Postives = 122/178 (68.54%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFN-TEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            DGDGDLD ++ +  +      +I++YYNQY+ESGTMTVSW++DTV V+ GN  LF   F D+++DG +++ K D   GDVA+Y+K  +G S E IISD+ II  PA   V DLDND  NDVI+TDGG  DDA+I+F+       + T   I +NN  MY I++ DFD+DGD+D+A+IG
Sbjct:  204 DGDGDLDVVVAFVNSQ-----SIELYYNQYVESGTMTVSWIQDTVPVSTGNSFLFNIGFGDINNDGVMDIYKVDFTSGDVAWYNKTVNGPSVENIISDDNIITNPARAYVIDLDNDMLNDVILTDGGVQDDAIIFFKGASNAPPSATPTFIANNNNIMYDISVEDFDDDGDMDVASIG 376          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: Por (secretion system C-terminal sorting domain-containing protein n=2 Tax=Winogradskyella sediminis TaxID=1382466 RepID=A0A1H1LV76_9FLAO)

HSP 1 Score: 175 bits (443), Expect = 2.000e-49
Identity = 94/181 (51.93%), Postives = 120/181 (66.30%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESG---TMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFN-TEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            D DGDLD L+GY  T     G+I+I+YNQY ++      TVSW++DT TV+ GN  LFV AFADV++DGTL+V+K D + G+V ++ KIK+GAST   ISDE II RP    V D+D D  ND I+TD G  DDA+IWF+       + T  LI +NNYQM+ IT  DFD D D+DI  IG
Sbjct:  206 DADGDLDVLVGYYNT-----GSIEIFYNQYDDTDPDPASTVSWVQDTETVDSGNPYLFVIAFADVNNDGTLDVVKLDNSSGEVEWFSKIKNGASTAYTISDENIISRPGAFEVVDIDEDGLNDFILTDSGASDDAIIWFKGASNAAPSATPQLIINNNYQMFDITTADFDGDSDIDIGTIG 381          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Psychroserpens jangbogonensis TaxID=1484460 RepID=UPI0009DDF655)

HSP 1 Score: 167 bits (422), Expect = 2.440e-46
Identity = 88/178 (49.44%), Postives = 119/178 (66.85%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFN-TEALIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            DGD DLD ++G       G   ++IYYN YIESG+  V+W++DT +V+DG   +   AF DV++DG ++V+ +D+  G V +YDKIK+G ST  IISD +II  PA+  V+D+DND+ NDVI+TD GT  DA+IWF+       + T   I DNN+QM  IT+ DFDND D DIA IG
Sbjct:  204 DGDTDLDVVVGIYNFP--GPQRVEIYYNLYIESGSTAVTWVKDTQSVDDGMSRVINIAFGDVNNDGQMDVVSTDITSGAVIWYDKIKNGTSTPNIISDASIISSPALAFVSDIDNDNLNDVIVTDFGTSGDAIIWFKGNSNATPDLTPTTIADNNFQMVDITVGDFDNDTDFDIATIG 379          
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Winogradskyella ludwigii TaxID=2686076 RepID=UPI0015CE9CCA)

HSP 1 Score: 164 bits (414), Expect = 3.390e-45
Identity = 87/181 (48.07%), Postives = 116/181 (64.09%), Query Frame = 1
Query:    1 DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESG---TMTVSWLEDTVTVNDGNLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDETIIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFNTEA-LIFDNNYQMYGITINDFDNDGDLDIAAIG 531
            D DGDLD L+GY        G I+IYYNQY  S      TVSW++DT TV+ G   +   AFADV++DGT++V+K D + GDV +++K+K+G ST   ISD +IID P  + + D+D D  ND I+TD G  D+A+IWF+       +T A LI +NNYQM  IT  DFD D D+DIA +G
Sbjct:  201 DADGDLDVLVGYYND-----GAIEIYYNQYDGSDPDPATTVSWIKDTQTVDSGANLILAIAFADVNNDGTMDVVKLDYSSGDVEWFNKVKNGTSTANTISDASIIDHPGAMLITDIDEDGLNDFILTDFGAADNAIIWFKGAANASPSTTAQLIIENNYQMQDITAADFDGDSDIDIAIVG 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75942.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T9SS6.220e-8174.58type A sorting domain-containing protein n=1 Tax=W... [more]
Por_Secre_tail2.340e-7868.36domain-containing protein n=1 Tax=Flavobacteriales... [more]
T9SS3.120e-5753.93type A sorting domain-containing protein n=2 Tax=H... [more]
Por_Secre_tail1.000e-5050.56domain-containing protein n=1 Tax=Hanstruepera neu... [more]
T9SS4.860e-5052.81type A sorting domain-containing protein n=1 Tax=F... [more]
T9SS7.230e-5050.28type A sorting domain-containing protein n=1 Tax=P... [more]
T9SS1.850e-4950.00type A sorting domain-containing protein n=1 Tax=S... [more]
Por2.000e-4951.93secretion system C-terminal sorting domain-contain... [more]
T9SS2.440e-4649.44type A sorting domain-containing protein n=1 Tax=P... [more]
T9SS3.390e-4548.07type A sorting domain-containing protein n=1 Tax=W... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75942contigH-canaliculatus_M_contigs75942:2..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1484460.JSWG01000006_gene2824
PFAMsBig_3_5,Calx-beta,VCBS
Model size531
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.27e-47
EggNOG OGsCOG3227@1|root,COG3391@1|root,COG3227@2|Bacteria,COG3391@2|Bacteria
Descriptionamine dehydrogenase activity
Cds size531
COG categoryCO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854097.1493735-CDS-H-canaliculatus_M_contigs75942:1..5321696854097.1493735-CDS-H-canaliculatus_M_contigs75942:1..532Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75942 2..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75942.1.1prot_H-canaliculatus_M_contigs75942.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75942 2..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75942.1.1

>prot_H-canaliculatus_M_contigs75942.1.1 ID=prot_H-canaliculatus_M_contigs75942.1.1|Name=mRNA_H-canaliculatus_M_contigs75942.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=177bp
DGDGDLDALIGYQETAVNGGGTIKIYYNQYIESGTMTVSWLEDTVTVNDG
NLSLFVAAFADVDDDGTLEVIKSDLNGGDVAYYDKIKDGASTETIISDET
IIDRPAVVAVADLDNDSYNDVIITDGGTVDDAMIWFESTDTGGFNTEALI
FDNNYQMYGITINDFDNDGDLDIAAIG
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mRNA from alignment at H-canaliculatus_M_contigs75942:2..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75942.1.1 ID=mRNA_H-canaliculatus_M_contigs75942.1.1|Name=mRNA_H-canaliculatus_M_contigs75942.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=531bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75942:2..532- (Hapterophycus canaliculatus Oshoro7m male)
GATGGTGATGGTGATTTAGATGCACTTATTGGCTATCAAGAAACTGCCGT TAATGGTGGTGGAACTATAAAAATATATTATAACCAATATATAGAAAGCG GTACGATGACTGTATCTTGGCTTGAAGATACTGTGACTGTAAATGATGGC AATCTTTCATTATTTGTCGCTGCTTTTGCAGATGTTGACGATGATGGTAC TTTAGAGGTTATAAAATCTGATTTAAATGGTGGTGATGTTGCATATTATG ATAAAATAAAAGATGGTGCCTCTACAGAAACAATTATTTCTGATGAAACT ATTATTGATAGACCTGCAGTTGTTGCAGTTGCAGATTTAGATAATGATTC TTATAATGATGTGATTATAACAGATGGTGGCACAGTAGATGATGCCATGA TTTGGTTTGAAAGTACAGATACAGGTGGTTTTAATACTGAAGCTTTGATT TTTGATAATAATTATCAAATGTATGGGATTACCATAAACGATTTTGATAA TGATGGTGACTTAGATATTGCTGCAATTGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75942:2..532-

>mRNA_H-canaliculatus_M_contigs75942.1.1 ID=mRNA_H-canaliculatus_M_contigs75942.1.1|Name=mRNA_H-canaliculatus_M_contigs75942.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=531bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75942:2..532- (Hapterophycus canaliculatus Oshoro7m male)
GATGGTGATGGTGATTTAGATGCACTTATTGGCTATCAAGAAACTGCCGT
TAATGGTGGTGGAACTATAAAAATATATTATAACCAATATATAGAAAGCG
GTACGATGACTGTATCTTGGCTTGAAGATACTGTGACTGTAAATGATGGC
AATCTTTCATTATTTGTCGCTGCTTTTGCAGATGTTGACGATGATGGTAC
TTTAGAGGTTATAAAATCTGATTTAAATGGTGGTGATGTTGCATATTATG
ATAAAATAAAAGATGGTGCCTCTACAGAAACAATTATTTCTGATGAAACT
ATTATTGATAGACCTGCAGTTGTTGCAGTTGCAGATTTAGATAATGATTC
TTATAATGATGTGATTATAACAGATGGTGGCACAGTAGATGATGCCATGA
TTTGGTTTGAAAGTACAGATACAGGTGGTTTTAATACTGAAGCTTTGATT
TTTGATAATAATTATCAAATGTATGGGATTACCATAAACGATTTTGATAA
TGATGGTGACTTAGATATTGCTGCAATTGGT
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