mRNA_H-canaliculatus_M_contigs75937.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75937.2.1
Unique Name	mRNA_H-canaliculatus_M_contigs75937.2.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pelagicola sp. LXJ1103 TaxID=2175247 RepID=A0A2U2CV46_9RHOB)

HSP 1 Score: 69.7 bits (169), Expect = 5.480e-13
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            EDAIEEE+DMPGW E LVD+L+E+YD D+ TIGR+ G+TLI+P
Sbjct:  249 EDAIEEEVDMPGWDEALVDDLSEIYDEDIYTIGRIPGITLITP 291

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BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Roseovarius nanhaiticus TaxID=573024 RepID=A0A1N7EDN3_9RHOB)

HSP 1 Score: 69.3 bits (168), Expect = 7.610e-13
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            EDAIEEELD+PGWT+ LVDEL++LYD DV  IGR+ G+TLI+P
Sbjct:  249 EDAIEEELDLPGWTDELVDELSDLYDDDVYEIGRLPGITLITP 291

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BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Roseovarius spongiae TaxID=2320272 RepID=A0A3A8ASK9_9RHOB)

HSP 1 Score: 68.2 bits (165), Expect = 2.030e-12
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            EDAIE+ELD+PGWTE LVD+LT+LYD DV  I R+ G+TLI+P
Sbjct:  249 EDAIEQELDLPGWTEELVDQLTDLYDEDVYAIARIPGITLIAP 291

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BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A7Y2D278_9RHOB)

HSP 1 Score: 67.8 bits (164), Expect = 2.820e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            E+ IEEELDM GWT+ LVDE+TELYD DV+ I RM GVTLISP
Sbjct:  249 EEEIEEELDMAGWTDTLVDEMTELYDEDVQIIERMPGVTLISP 291

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BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudohalocynthiibacter aestuariivivens TaxID=1591409 RepID=A0A6G6FI72_9RHOB)

HSP 1 Score: 67.8 bits (164), Expect = 2.820e-12
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            EDAIEEELD+PGWTE ++D+LT+LYD D+ TI R+ G++LI+P
Sbjct:  249 EDAIEEELDLPGWTEEVIDQLTDLYDEDIYTIARIPGISLIAP 291

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BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tritonibacter litoralis TaxID=2662264 RepID=A0A843YJT3_9RHOB)

HSP 1 Score: 67.4 bits (163), Expect = 3.900e-12
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            +DA+EEELDMP WTE L+++ TE+YDRD+E IG++ GVTLI P
Sbjct:  249 DDAVEEELDMPSWTEELIEDATEVYDRDLELIGQLDGVTLIEP 291

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BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sulfitobacter noctilucicola TaxID=1342301 RepID=A0A7W6MCJ2_9RHOB)

HSP 1 Score: 67.4 bits (163), Expect = 3.900e-12
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            ++AIEEELDMPGWTE LVDELT+LYD D+  + R+ GVT+ISP
Sbjct:  249 DEAIEEELDMPGWTEALVDELTDLYDEDMLAVQRLPGVTMISP 291

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aliiroseovarius sp. xm-m-354 TaxID=2651830 RepID=UPI001A0694FD)

HSP 1 Score: 63.9 bits (154), Expect = 4.010e-12
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            E+ IEEELDMPGWTE LV+ +T LYD DVE I  M GVTLI+P
Sbjct:   58 EEEIEEELDMPGWTEELVERMTALYDADVEVIRAMPGVTLIAP 100

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BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9BA71_9ZZZZ)

HSP 1 Score: 62.0 bits (149), Expect = 6.280e-12
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            E+ IEEELDMPGWTE LV+ +T LYD DVE I  M GVT I+P
Sbjct:    4 EEEIEEELDMPGWTEELVERMTALYDADVEIIRAMPGVTFITP 46

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pelagivirga sediminicola TaxID=2170575 RepID=A0A2T7G889_9RHOB)

HSP 1 Score: 66.6 bits (161), Expect = 7.500e-12
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1

Query:    1 EDAIEEELDMPGWTEPLVDELTELYDRDVETIGRMQGVTLISP 129
            +DAIEEELD+PGWTE LVDEL++LYD D   IGR+ G++LI+P
Sbjct:  249 QDAIEEELDLPGWTEELVDELSDLYDEDAYRIGRIPGISLITP 291

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75937.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	5.480e-13	69.77	protein n=1 Tax=Pelagicola sp. LXJ1103 TaxID=21752...	[more]
Uncharacterized	7.610e-13	72.09	protein n=1 Tax=Roseovarius nanhaiticus TaxID=5730...	[more]
Uncharacterized	2.030e-12	69.77	protein n=1 Tax=Roseovarius spongiae TaxID=2320272...	[more]
Uncharacterized	2.820e-12	74.42	protein n=1 Tax=Sulfitobacter sp. TaxID=1903071 Re...	[more]
Uncharacterized	2.820e-12	65.12	protein n=1 Tax=Pseudohalocynthiibacter aestuariiv...	[more]
Uncharacterized	3.900e-12	65.12	protein n=1 Tax=Tritonibacter litoralis TaxID=2662...	[more]
Uncharacterized	3.900e-12	69.77	protein n=1 Tax=Sulfitobacter noctilucicola TaxID=...	[more]
Uncharacterized	4.010e-12	69.77	protein n=1 Tax=Aliiroseovarius sp. xm-m-354 TaxID...	[more]
Uncharacterized	6.280e-12	67.44	protein (Fragment) n=1 Tax=marine sediment metagen...	[more]
Uncharacterized	7.500e-12	67.44	protein n=1 Tax=Pelagivirga sediminicola TaxID=217...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75937	contig	H-canaliculatus_M_contigs75937:400..531 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	1305735.JAFT01000005_gene3069
Model size	132
Max annot lvl	28211\|Alphaproteobacteria
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	5.1e-09
EggNOG OGs	28H7R@1\|root,2Z7JV@2\|Bacteria,1MY9Z@1224\|Proteobacteria,2TR4G@28211\|Alphaproteobacteria,2PCJR@252301\|Oceanicola
Cds size	105

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854096.968309-CDS-H-canaliculatus_M_contigs75937:399..504	1696854096.968309-CDS-H-canaliculatus_M_contigs75937:399..504	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75937 400..504 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854096.99223-UTR-H-canaliculatus_M_contigs75937:504..531	1696854096.99223-UTR-H-canaliculatus_M_contigs75937:504..531	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs75937 505..531 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75937.2.1	prot_H-canaliculatus_M_contigs75937.2.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75937 400..504 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75937:400..531-
coding sequence from alignment at H-canaliculatus_M_contigs75937:400..531-

protein sequence of mRNA_H-canaliculatus_M_contigs75937.2.1

>prot_H-canaliculatus_M_contigs75937.2.1 ID=prot_H-canaliculatus_M_contigs75937.2.1|Name=mRNA_H-canaliculatus_M_contigs75937.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=35bp
MPGWTEPLVDELTELYDRDVETIGRMQGVTLISP*

mRNA from alignment at H-canaliculatus_M_contigs75937:400..531-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75937.2.1 ID=mRNA_H-canaliculatus_M_contigs75937.2.1|Name=mRNA_H-canaliculatus_M_contigs75937.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75937:400..531- (Hapterophycus canaliculatus Oshoro7m male)
GAAGATGCCATCGAAGAAGAGCTCGATATGCCGGGCTGGACCGAGCCACT
GGTGGATGAGCTAACCGAGCTCTATGACCGAGATGTCGAAACGATTGGCC
GCATGCAAGGCGTGACGCTGATCTCGCCCTAG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75937:400..531-

>mRNA_H-canaliculatus_M_contigs75937.2.1 ID=mRNA_H-canaliculatus_M_contigs75937.2.1|Name=mRNA_H-canaliculatus_M_contigs75937.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=105bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75937:400..531- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGGGCTGGACCGAGCCACTGGTGGATGAGCTAACCGAGCTCTATGA
CCGAGATGTCGAAACGATTGGCCGCATGCAAGGCGTGACGCTGATCTCGC
CCTAG