mRNA_H-canaliculatus_M_contigs75926.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75926.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75926.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CGS5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.210e-16
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLGSTE+YPQ +KHNCNGRF+VVCGDGEYIIYTSQ      F
Sbjct:   44 DLGSTEIYPQSVKHNCNGRFIVVCGDGEYIIYTSQALRNKEF 85
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQ04_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-14
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLGSTE++PQ +KHNCNGRF+VVCGDGEYIIYTSQ      F
Sbjct:  264 DLGSTEIFPQCIKHNCNGRFIVVCGDGEYIIYTSQALRNKSF 305
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Coatomer (WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.070e-14
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLG+TE++PQ L+HNCNGRFLVVCGDGEY++YTSQ      F
Sbjct:  349 DLGATEIFPQALRHNCNGRFLVVCGDGEYVVYTSQALRNKAF 390
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Coatomer_WDAD (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3N3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.920e-14
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLGSTE++PQ L HNCNGRF+VVCGDGEYIIYTSQ      F
Sbjct:  364 DLGSTEIFPQTLAHNCNGRFVVVCGDGEYIIYTSQALRNKSF 405
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Coatomer (subunit beta' n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWK9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.460e-14
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLGS ELYPQ+LKHNCNGRF+ VCGDGE+IIYTSQ      F
Sbjct:  350 DLGSCELYPQMLKHNCNGRFVAVCGDGEFIIYTSQALRNKAF 391
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Coatomer (subunit beta' n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGS9_AURAN)

HSP 1 Score: 72.0 bits (175), Expect = 1.290e-13
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            D+GS E++PQV++HNCNGRFLVVCGDGEYIIYTSQ      F
Sbjct:  352 DMGSCEIFPQVVQHNCNGRFLVVCGDGEYIIYTSQALRNKAF 393
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N5K4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-13
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLGS ELYPQ+LKHNCNGRF+ VCGDGE+IIYT+Q      F
Sbjct:  347 DLGSCELYPQILKHNCNGRFVAVCGDGEFIIYTAQALRNKAF 388
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR98_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.770e-13
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLGSTE++PQ ++HNCNGRF+VVCGDGEYIIYTSQ      F
Sbjct:  371 DLGSTEVFPQQVQHNCNGRFIVVCGDGEYIIYTSQALRNKAF 412
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAZ1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.420e-13
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLG+ ELYPQ+LKHNCNGRF+ VCGDGE+IIYTSQ      F
Sbjct:  264 DLGACELYPQMLKHNCNGRFVAVCGDGEFIIYTSQALRNKAF 305
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BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RXN3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.420e-13
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF 126
            DLGS ELYPQ+LKHNCNGRF+ VCGDGE+IIYT+Q      F
Sbjct:  132 DLGSCELYPQMLKHNCNGRFVAVCGDGEFIIYTAQALRNKAF 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75926.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical4.210e-1676.19protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Hypothetical1.990e-1473.81protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Coatomer5.070e-1469.05WD associated region-domain-containing protein n=1... [more]
Coatomer_WDAD6.920e-1473.81domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Coatomer9.460e-1473.81subunit beta' n=1 Tax=Fragilariopsis cylindrus CCM... [more]
Coatomer1.290e-1371.43subunit beta' n=1 Tax=Aureococcus anophagefferens ... [more]
Hypothetical1.300e-1371.43protein (Fragment) n=1 Tax=Helicotheca tamesis Tax... [more]
Hypothetical1.770e-1371.43protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Hypothetical2.420e-1371.43protein (Fragment) n=1 Tax=Chaetoceros debilis Tax... [more]
Hypothetical2.420e-1371.43protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75926contigH-canaliculatus_M_contigs75926:75..200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009039569.1
PFAMsCoatomer_WDAD,WD40
Model size126
Max annot lvl2759|Eukaryota
KEGG koko:K17302
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
Exons1
Evalue2.12e-14
EggNOG OGsKOG0276@1|root,KOG0276@2759|Eukaryota
DescriptionThe coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Cds size126
COG categoryU
BRITEko00000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.7720184-CDS-H-canaliculatus_M_contigs75926:74..2001696854096.7720184-CDS-H-canaliculatus_M_contigs75926:74..200Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75926 75..200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75926.1.1prot_H-canaliculatus_M_contigs75926.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75926 75..200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75926.1.1

>prot_H-canaliculatus_M_contigs75926.1.1 ID=prot_H-canaliculatus_M_contigs75926.1.1|Name=mRNA_H-canaliculatus_M_contigs75926.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTSQVTSRSRF
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mRNA from alignment at H-canaliculatus_M_contigs75926:75..200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75926.1.1 ID=mRNA_H-canaliculatus_M_contigs75926.1.1|Name=mRNA_H-canaliculatus_M_contigs75926.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75926:75..200- (Hapterophycus canaliculatus Oshoro7m male)
GACCTCGGCTCCACCGAGCTCTACCCTCAGGTTCTCAAGCACAACTGCAA
CGGCAGGTTCCTGGTGGTCTGCGGGGACGGGGAGTACATCATCTACACCT
CTCAGGTGACCTCCCGCTCACGATTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75926:75..200-

>mRNA_H-canaliculatus_M_contigs75926.1.1 ID=mRNA_H-canaliculatus_M_contigs75926.1.1|Name=mRNA_H-canaliculatus_M_contigs75926.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75926:75..200- (Hapterophycus canaliculatus Oshoro7m male)
GACCTCGGCTCCACCGAGCTCTACCCTCAGGTTCTCAAGCACAACTGCAA
CGGCAGGTTCCTGGTGGTCTGCGGGGACGGGGAGTACATCATCTACACCT
CTCAGGTGACCTCCCGCTCACGATTT
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