mRNA_H-canaliculatus_M_contigs75901.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75901.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs75901.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1H6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.170e-16
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGM 117
            +DMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGM
Sbjct:  317 KDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGM 355

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BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0L9_PHATC)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGM 117
            +DMIDDALLRPGRLEVHVEIGLPD AGRLQIL IHTR M
Sbjct:  171 KDMIDDALLRPGRLEVHVEIGLPDTAGRLQILNIHTRNM 209

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BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZP61_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.650e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGM 117
            +DMIDDALLRPGRLEVHVEIGLPD  GRLQILQIHT+ M
Sbjct:  401 KDMIDDALLRPGRLEVHVEIGLPDTKGRLQILQIHTKNM 439

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TI52_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 2.650e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRG 114
            +DM+DDALLRPGRLEVHVEIGLPD AGRLQIL IHTRG
Sbjct:  380 KDMLDDALLRPGRLEVHVEIGLPDAAGRLQILGIHTRG 417

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY63_THAPS)

HSP 1 Score: 71.2 bits (173), Expect = 2.650e-13
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGMV 120
            +DMIDDALLRPGRLEVHVEIGLPD  GRLQIL IHTR M+
Sbjct:  391 KDMIDDALLRPGRLEVHVEIGLPDNKGRLQILNIHTRNML 430

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BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YUX3_NANGC)

HSP 1 Score: 70.9 bits (172), Expect = 3.620e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGMVRE 126
            +D++DDALLRPGRLEVHVE+GLPDEAGR QI Q+HT+G   E
Sbjct:  207 KDLLDDALLRPGRLEVHVEVGLPDEAGRAQIFQVHTKGFATE 248

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BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQS5_9CRYP)

HSP 1 Score: 70.5 bits (171), Expect = 4.790e-13
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGM 117
            +DM+D+ALLRPGRLEVH+EIGLPDEAGR+QIL IHT GM
Sbjct:  380 KDMLDEALLRPGRLEVHIEIGLPDEAGRVQILSIHTGGM 418

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GY16_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 4.940e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGMVR 123
            +DMIDDALLRPGRLEVHVEIGLPDE GRLQIL+IHT  + R
Sbjct:  386 KDMIDDALLRPGRLEVHVEIGLPDEKGRLQILKIHTHDLQR 426

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVA7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.740e-13
Identity = 32/39 (82.05%), Postives = 38/39 (97.44%), Query Frame = 1

Query:    1 QDMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGM 117
            +DMID+ALLRPGRLE+HVEIGLPD+AGRLQIL+IHT+ M
Sbjct:  370 KDMIDEALLRPGRLELHVEIGLPDQAGRLQILKIHTKSM 408

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LNI1_9BRAS)

HSP 1 Score: 70.1 bits (170), Expect = 6.750e-13
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 1

Query:    4 DMIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGM 117
            DM+D+ALLRPGRLEVH+EIGLPDEAGRL+ILQIHT+ M
Sbjct:  388 DMLDEALLRPGRLEVHIEIGLPDEAGRLEILQIHTKMM 425

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75901.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Vesicle-fusing	5.170e-16	97.44	ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K...	[more]
Vesicle-fusing	1.040e-13	89.74	ATPase (Fragment) n=1 Tax=Phaeodactylum tricornutu...	[more]
Vesicle-fusing	2.650e-13	87.18	ATPase n=1 Tax=Pseudo-nitzschia multistriata TaxID...	[more]
Vesicle-fusing	2.650e-13	89.47	ATPase n=1 Tax=Heterosigma akashiwo TaxID=2829 Rep...	[more]
Vesicle-fusing	2.650e-13	85.00	ATPase n=1 Tax=Thalassiosira pseudonana TaxID=3512...	[more]
Vesicle-fusing	3.620e-13	73.81	ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=...	[more]
Vesicle-fusing	4.790e-13	82.05	ATPase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=...	[more]
Vesicle-fusing	4.940e-13	82.93	ATPase n=1 Tax=Amorphochlora amoebiformis TaxID=15...	[more]
Vesicle-fusing	6.740e-13	82.05	ATPase (Fragment) n=1 Tax=Phaeomonas parva TaxID=1...	[more]
Vesicle-fusing	6.750e-13	84.21	ATPase n=1 Tax=Microthlaspi erraticum TaxID=168548...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75901	contig	H-canaliculatus_M_contigs75901:281..412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D8LTY3
Preferred name	NSF
PFAMs	AAA,CDC48_2,CDC48_N
Model size	132
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06027
KEGG TC	1.F.1.1
KEGG Pathway	ko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005886,GO:0005911,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0008104,GO:0008150,GO:0009306,GO:0009506,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030054,GO:0032940,GO:0033036,GO:0040011,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055044,GO:0071702,GO:0071705,GO:0071944,GO:0098657
Exons	1
Evalue	5.02e-16
EggNOG OGs	COG0464@1\|root,KOG0741@2759\|Eukaryota
EC	3.6.4.6
Description	SNARE complex disassembly
Cds size	126
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04131

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854096.451169-UTR-H-canaliculatus_M_contigs75901:280..286	1696854096.451169-UTR-H-canaliculatus_M_contigs75901:280..286	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs75901 281..286 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854096.468545-CDS-H-canaliculatus_M_contigs75901:286..412	1696854096.468545-CDS-H-canaliculatus_M_contigs75901:286..412	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75901 287..412 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75901.1.1	prot_H-canaliculatus_M_contigs75901.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75901 287..412 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75901:281..412+
coding sequence from alignment at H-canaliculatus_M_contigs75901:281..412+

protein sequence of mRNA_H-canaliculatus_M_contigs75901.1.1

>prot_H-canaliculatus_M_contigs75901.1.1 ID=prot_H-canaliculatus_M_contigs75901.1.1|Name=mRNA_H-canaliculatus_M_contigs75901.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
MIDDALLRPGRLEVHVEIGLPDEAGRLQILQIHTRGMVRERQ

mRNA from alignment at H-canaliculatus_M_contigs75901:281..412+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75901.1.1 ID=mRNA_H-canaliculatus_M_contigs75901.1.1|Name=mRNA_H-canaliculatus_M_contigs75901.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75901:281..412+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGACATGATCGACGATGCCTTGTTGAGACCCGGCCGCCTGGAGGTTCA
CGTGGAGATCGGGCTCCCGGACGAGGCTGGACGGCTGCAGATCCTGCAGA
TTCACACTCGCGGCATGGTGAGAGAGAGACAG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75901:281..412+

>mRNA_H-canaliculatus_M_contigs75901.1.1 ID=mRNA_H-canaliculatus_M_contigs75901.1.1|Name=mRNA_H-canaliculatus_M_contigs75901.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75901:281..412+ (Hapterophycus canaliculatus Oshoro7m male)
ATGATCGACGATGCCTTGTTGAGACCCGGCCGCCTGGAGGTTCACGTGGA
GATCGGGCTCCCGGACGAGGCTGGACGGCTGCAGATCCTGCAGATTCACA
CTCGCGGCATGGTGAGAGAGAGACAG