mRNA_H-canaliculatus_M_contigs7586.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7586.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7586.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJV0_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.320e-50
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 1
Query:    4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
            YRLKSPDAVMFSKKND NPMEDETSAEFLMSKNDC LF FGSHNKKRPNN+VLGRTFDGHMLDMIELGLV YRGLGELAGLAKRVGSKP
Sbjct:   53 YRLKSPDAVMFSKKNDTNPMEDETSAEFLMSKNDCSLFCFGSHNKKRPNNVVLGRTFDGHMLDMIELGLVQYRGLGELAGLAKRVGSKP 141          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC15_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.700e-34
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
            YR+K P + M  ++ND+ P +DET  EFL +KND  LFLFGSHNKKRPNN+VLGRTFDGH+LDM+E+G+  YRG+ E  G AKRVGSKP
Sbjct:   53 YRMKKPFSRMLGRRNDLTPFDDETGIEFLTTKNDSSLFLFGSHNKKRPNNIVLGRTFDGHILDMMEMGVTAYRGIDEFRGSAKRVGSKP 141          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDE5_HETAK)

HSP 1 Score: 119 bits (297), Expect = 2.560e-32
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAG--LAKRVGSKP 270
            YRLK P  +MF++ ND+ P EDET  EFL  KNDC LF  GSHNKKRP+NL+LGR FDGH+LDM+ELG+  +  + E+ G  LAKRVGSKP
Sbjct:   55 YRLKKPHGLMFARHNDVQPFEDETKIEFLCGKNDCSLFALGSHNKKRPHNLILGRLFDGHLLDMVELGVADFASV-EMVGAALAKRVGSKP 144          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9P565_9TELE)

HSP 1 Score: 108 bits (270), Expect = 5.290e-28
Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 QYRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
            QY LK P+AV++ KKN   P ED TS EF   K DC LFLFGSHNKKRPNNL+ GR FD H+LDM+ELG+  Y  L E+       G+KP
Sbjct:   30 QYSLKKPNAVLYKKKNITRPFEDSTSLEFFSKKTDCSLFLFGSHNKKRPNNLIFGRMFDFHLLDMVELGVEKYVALSEIKNSKCPEGTKP 119          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.380e-27
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLA-KRVGSKP 270
            +R+K+P + M S+ NDI+P EDE+  EFL  KNDC LF FGSHNKKRP+NLVLGRT+DG +LDM ELG+  ++ + E    A KR+GSKP
Sbjct:   55 HRVKNPHSRMLSRNNDIHPFEDESKMEFLCEKNDCSLFAFGSHNKKRPHNLVLGRTYDGRLLDMFELGVEKFKSVVETKAKAPKRIGSKP 144          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: ribosome (production factor 2 homolog n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001402321C)

HSP 1 Score: 109 bits (272), Expect = 6.220e-27
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
            Y LK P+AV++ KKN   P ED+TS EF   K+DC LF+FGSHNKKRP+NL++GR FD H+LDMIELG+  + GL +        GSKP
Sbjct:   53 YSLKKPNAVLYKKKNITRPFEDQTSVEFFSKKSDCSLFMFGSHNKKRPHNLIIGRMFDYHILDMIELGIEKFHGLSDFKNSKSAEGSKP 141          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=2 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3B630_KRYMA)

HSP 1 Score: 108 bits (271), Expect = 6.830e-27
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
            Y LK PDAV++ KKN   P ED TS EF   K DC LFLFGSHNKKRPNNL+ GR FD H+LDMIELG+  Y  L E+       G+KP
Sbjct:   53 YSLKKPDAVLYKKKNIARPFEDSTSLEFFSKKTDCSLFLFGSHNKKRPNNLIFGRMFDFHVLDMIELGIEKYVSLSEIKNSKCPEGTKP 141          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZXI9_SYMMI)

HSP 1 Score: 105 bits (261), Expect = 6.920e-27
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    7 RLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
            RL  P+   FS+KNDI+P +D  S EFL  +NDC  F+ GSH+KKRP+N+++GR +DGH+LDM+ELG+  +RG+       K VGSKP
Sbjct:    2 RLLKPNVKTFSRKNDIHPFDDCNSLEFLCDRNDCSQFIIGSHSKKRPHNMIMGRMYDGHLLDMVELGISSFRGIESFLSRTKAVGSKP 89          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: ribosome (production factor 2 homolog n=2 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI00195374FA)

HSP 1 Score: 105 bits (262), Expect = 7.290e-27
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
            Y LK P+AV++ KKN   P ED TS EF   K DC LFLFGSHNKKRPNN + GR FD H+LDMIELG+  Y  L E+       G+KP
Sbjct:   53 YSLKKPNAVLYKKKNITRPFEDSTSLEFFSKKTDCSLFLFGSHNKKRPNNFIFGRLFDFHVLDMIELGIEKYVSLSEIKASKFPEGTKP 141          
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HGH2_LINUN)

HSP 1 Score: 108 bits (269), Expect = 1.580e-26
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
            Y LK PDAVMF KKN + P+ED+TS EFL  +ND  LF+FGSH KKRPNN+V+GR FD H+LDM+ELG+  Y+ + E       +GSKP
Sbjct:   67 YFLKKPDAVMFQKKNIMRPLEDQTSLEFLSDRNDASLFMFGSHQKKRPNNVVIGRFFDFHVLDMVELGIEKYKSMQEFHVGKFSLGSKP 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosome1.320e-5094.38production factor 2 homolog n=2 Tax=Ectocarpus Tax... [more]
Ribosome2.700e-3465.17production factor 2 homolog n=1 Tax=Tribonema minu... [more]
Ribosome2.560e-3262.64production factor 2 homolog (Fragment) n=1 Tax=Het... [more]
Ribosome5.290e-2857.78production factor 2 homolog n=1 Tax=Notothenia cor... [more]
Ribosome2.380e-2758.89production factor 2 homolog n=1 Tax=Fibrocapsa jap... [more]
ribosome6.220e-2756.18production factor 2 homolog n=2 Tax=Amblyraja radi... [more]
Ribosome6.830e-2759.55production factor 2 homolog n=2 Tax=Kryptolebias m... [more]
Ribosome6.920e-2752.27production factor 2 homolog (Fragment) n=1 Tax=Sym... [more]
ribosome7.290e-2757.30production factor 2 homolog n=2 Tax=Pseudocrenilab... [more]
Ribosome1.580e-2658.43production factor 2 homolog n=2 Tax=Lingula unguis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7586contigH-canaliculatus_M_contigs7586:2154..3312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJV0
PFAMsBrix
Model size270
Max annot lvl2759|Eukaryota
KEGG koko:K14847
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004611,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008964,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016829,GO:0016830,GO:0016831,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0099402,GO:1901360,GO:1901363
Exons2
Evalue7.72e-45
EggNOG OGsCOG5106@1|root,KOG3031@2759|Eukaryota
Ec32 ortholog descriptionBrix domain
Ec32 orthologEc-10_000560.1
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size240
COG categoryO
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.9413667-CDS-H-canaliculatus_M_contigs7586:2153..22611696854095.9413667-CDS-H-canaliculatus_M_contigs7586:2153..2261Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7586 2154..2261 -
1696854095.9544022-CDS-H-canaliculatus_M_contigs7586:3150..32821696854095.9544022-CDS-H-canaliculatus_M_contigs7586:3150..3282Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7586 3151..3282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.9746408-UTR-H-canaliculatus_M_contigs7586:3282..33121696854095.9746408-UTR-H-canaliculatus_M_contigs7586:3282..3312Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7586 3283..3312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7586.1.1prot_H-canaliculatus_M_contigs7586.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7586 2154..3282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7586.1.1

>prot_H-canaliculatus_M_contigs7586.1.1 ID=prot_H-canaliculatus_M_contigs7586.1.1|Name=mRNA_H-canaliculatus_M_contigs7586.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=80bp
MFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDG
HMLDMIELGLVGYRGLGELAGLAKRVGSKP
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mRNA from alignment at H-canaliculatus_M_contigs7586:2154..3312-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7586.1.1 ID=mRNA_H-canaliculatus_M_contigs7586.1.1|Name=mRNA_H-canaliculatus_M_contigs7586.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1159bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7586:2154..3312- (Hapterophycus canaliculatus Oshoro7m male)
CAGTACCGCCTCAAGTCTCCCGACGCCGTCATGTTCTCCAAGAAAAACGA CATCAACCCAATGGAGGACGAAACCTCGGCCGAGTTCCTCATGTCCAAGA ACGATTGCCCGCTTTTCCTTTTTGGCAGTCACAACAAGAAGCGTCCCAAC AACCTCGTCCTGGTGAGTTATGAAGCGGCAGAGAAGAGTCGCGGAGCGTG TTGTTTTCAGATCAAAGTCGCGGCTCGTTGCTCAAATCATGATCGGGGTT GTACTGCAAAACAAGGTCGGCGGAATCCCTCAAATGTTGAAGCGCGGCAT TCACATCTCCGCACTTCCTTATCGAAATCTCGTCATCTGATTCATGTTCC GATCCTCCCGCACAGGCTTGCCGGATTGCAGTCTCTTTGGCTGTATCGTT CCCTCCTACCCTTCCTCGCTCTGGGATGGCGGACCCTTTCCACTACTCCA CCTCTACGACCTCCGCCCACTGTCGAATTCCTTCCGCAACCTTCGACGTC ATCGCTGCCAACCATGACTGAGTTGTATACGTCTTGGAAATGTCTTCGTG TGGTTTCGGATATCCATTCTCGCTGAACAACTGTGATGCAAGCTTCGGGC TTTGTCCCCTAGCGCCAACTTCTGCGGAGATTCTCTTCTCCTCAGCGCTT ACATTTTTTTTGTGCTCAGCCTTGCGAGGATGATGCATCTCGTTTCCAGT CTACACGCACCGGCCGTGTGATGTACGCTCAGCATACAAGTCTAGGCGCC AAAGCTGAAGATGACGCGCAATTTATCCGCCCGTCTCCGAGCACCCCTGC TGTTTTCTTGCATGAGAATCACGCGAATCAGGCGGTGTGCTTTGAAGCAA ATGTCGTGCCGAAATACATCTGCAGGTACCTCACAACAGTGCAGACGACG CCGTCCGGACATCGTCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCT GTTGCTGTTGCTGTTGCTGTTGCTGCTGCTGCTGTTGTACCTTCGTCATA CACCGTCGGTGGAACGCTCACACACATGCTGCACTTGAATCATTTCGGCA GGGTCGAACATTCGACGGTCACATGCTGGACATGATCGAGCTGGGTCTGG TGGGCTACCGGGGGCTCGGCGAGCTGGCGGGGCTGGCGAAACGCGTTGGT TCCAAACCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7586:2154..3312-

>mRNA_H-canaliculatus_M_contigs7586.1.1 ID=mRNA_H-canaliculatus_M_contigs7586.1.1|Name=mRNA_H-canaliculatus_M_contigs7586.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7586:2154..3312- (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCTCCAAGAAAAACGACATCAACCCAATGGAGGACGAAACCTCGGC
CGAGTTCCTCATGTCCAAGAACGATTGCCCGCTTTTCCTTTTTGGCAGTC
ACAACAAGAAGCGTCCCAACAACCTCGTCCTGGGTCGAACATTCGACGGT
CACATGCTGGACATGATCGAGCTGGGTCTGGTGGGCTACCGGGGGCTCGG
CGAGCTGGCGGGGCTGGCGAAACGCGTTGGTTCCAAACCC
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