mRNA_H-canaliculatus_M_contigs7586.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJV0_ECTSI) HSP 1 Score: 171 bits (433), Expect = 1.320e-50 Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 1
Query: 4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
YRLKSPDAVMFSKKND NPMEDETSAEFLMSKNDC LF FGSHNKKRPNN+VLGRTFDGHMLDMIELGLV YRGLGELAGLAKRVGSKP
Sbjct: 53 YRLKSPDAVMFSKKNDTNPMEDETSAEFLMSKNDCSLFCFGSHNKKRPNNVVLGRTFDGHMLDMIELGLVQYRGLGELAGLAKRVGSKP 141
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC15_9STRA) HSP 1 Score: 128 bits (321), Expect = 2.700e-34 Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 1
Query: 4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
YR+K P + M ++ND+ P +DET EFL +KND LFLFGSHNKKRPNN+VLGRTFDGH+LDM+E+G+ YRG+ E G AKRVGSKP
Sbjct: 53 YRMKKPFSRMLGRRNDLTPFDDETGIEFLTTKNDSSLFLFGSHNKKRPNNIVLGRTFDGHILDMMEMGVTAYRGIDEFRGSAKRVGSKP 141
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDE5_HETAK) HSP 1 Score: 119 bits (297), Expect = 2.560e-32 Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAG--LAKRVGSKP 270
YRLK P +MF++ ND+ P EDET EFL KNDC LF GSHNKKRP+NL+LGR FDGH+LDM+ELG+ + + E+ G LAKRVGSKP
Sbjct: 55 YRLKKPHGLMFARHNDVQPFEDETKIEFLCGKNDCSLFALGSHNKKRPHNLILGRLFDGHLLDMVELGVADFASV-EMVGAALAKRVGSKP 144
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9P565_9TELE) HSP 1 Score: 108 bits (270), Expect = 5.290e-28 Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 1 QYRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
QY LK P+AV++ KKN P ED TS EF K DC LFLFGSHNKKRPNNL+ GR FD H+LDM+ELG+ Y L E+ G+KP
Sbjct: 30 QYSLKKPNAVLYKKKNITRPFEDSTSLEFFSKKTDCSLFLFGSHNKKRPNNLIFGRMFDFHLLDMVELGVEKYVALSEIKNSKCPEGTKP 119
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD7_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.380e-27 Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLA-KRVGSKP 270
+R+K+P + M S+ NDI+P EDE+ EFL KNDC LF FGSHNKKRP+NLVLGRT+DG +LDM ELG+ ++ + E A KR+GSKP
Sbjct: 55 HRVKNPHSRMLSRNNDIHPFEDESKMEFLCEKNDCSLFAFGSHNKKRPHNLVLGRTYDGRLLDMFELGVEKFKSVVETKAKAPKRIGSKP 144
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: ribosome (production factor 2 homolog n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001402321C) HSP 1 Score: 109 bits (272), Expect = 6.220e-27 Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
Y LK P+AV++ KKN P ED+TS EF K+DC LF+FGSHNKKRP+NL++GR FD H+LDMIELG+ + GL + GSKP
Sbjct: 53 YSLKKPNAVLYKKKNITRPFEDQTSVEFFSKKSDCSLFMFGSHNKKRPHNLIIGRMFDYHILDMIELGIEKFHGLSDFKNSKSAEGSKP 141
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=2 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3B630_KRYMA) HSP 1 Score: 108 bits (271), Expect = 6.830e-27 Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
Y LK PDAV++ KKN P ED TS EF K DC LFLFGSHNKKRPNNL+ GR FD H+LDMIELG+ Y L E+ G+KP
Sbjct: 53 YSLKKPDAVLYKKKNIARPFEDSTSLEFFSKKTDCSLFLFGSHNKKRPNNLIFGRMFDFHVLDMIELGIEKYVSLSEIKNSKCPEGTKP 141
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZXI9_SYMMI) HSP 1 Score: 105 bits (261), Expect = 6.920e-27 Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 7 RLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
RL P+ FS+KNDI+P +D S EFL +NDC F+ GSH+KKRP+N+++GR +DGH+LDM+ELG+ +RG+ K VGSKP
Sbjct: 2 RLLKPNVKTFSRKNDIHPFDDCNSLEFLCDRNDCSQFIIGSHSKKRPHNMIMGRMYDGHLLDMVELGISSFRGIESFLSRTKAVGSKP 89
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: ribosome (production factor 2 homolog n=2 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI00195374FA) HSP 1 Score: 105 bits (262), Expect = 7.290e-27 Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
Y LK P+AV++ KKN P ED TS EF K DC LFLFGSHNKKRPNN + GR FD H+LDMIELG+ Y L E+ G+KP
Sbjct: 53 YSLKKPNAVLYKKKNITRPFEDSTSLEFFSKKTDCSLFLFGSHNKKRPNNFIFGRLFDFHVLDMIELGIEKYVSLSEIKASKFPEGTKP 141
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Match: Ribosome (production factor 2 homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HGH2_LINUN) HSP 1 Score: 108 bits (269), Expect = 1.580e-26 Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 4 YRLKSPDAVMFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGHMLDMIELGLVGYRGLGELAGLAKRVGSKP 270
Y LK PDAVMF KKN + P+ED+TS EFL +ND LF+FGSH KKRPNN+V+GR FD H+LDM+ELG+ Y+ + E +GSKP
Sbjct: 67 YFLKKPDAVMFQKKNIMRPLEDQTSLEFLSDRNDASLFMFGSHQKKRPNNVVIGRFFDFHVLDMVELGIEKYKSMQEFHVGKFSLGSKP 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7586.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7586.1.1 >prot_H-canaliculatus_M_contigs7586.1.1 ID=prot_H-canaliculatus_M_contigs7586.1.1|Name=mRNA_H-canaliculatus_M_contigs7586.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=80bp MFSKKNDINPMEDETSAEFLMSKNDCPLFLFGSHNKKRPNNLVLGRTFDGback to top mRNA from alignment at H-canaliculatus_M_contigs7586:2154..3312- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7586.1.1 ID=mRNA_H-canaliculatus_M_contigs7586.1.1|Name=mRNA_H-canaliculatus_M_contigs7586.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1159bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7586:2154..3312- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7586:2154..3312- >mRNA_H-canaliculatus_M_contigs7586.1.1 ID=mRNA_H-canaliculatus_M_contigs7586.1.1|Name=mRNA_H-canaliculatus_M_contigs7586.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7586:2154..3312- (Hapterophycus canaliculatus Oshoro7m male)back to top |