mRNA_H-canaliculatus_M_contigs75792.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75792.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75792.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: Dihydroorotase ((Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F747_9RHOB)

HSP 1 Score: 323 bits (827), Expect = 8.580e-110
Identity = 158/177 (89.27%), Postives = 167/177 (94.35%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVTSA A  YRDRIL+ALPEG+TFEPLMTLYLTE +DP+D+AAAHASGLIKAVKLYPAGATTNS+SGVSHFD V P LERMAEIGLPLCVHGEVTD DIDIFDREAVFIDRVLDPIRR TPGLRV+MEHITT NAV+YAR+QDDTLGATITTHHLVINRNHILAGGIKPHYYCLP
Sbjct:   45 PPVVTSADAAGYRDRILSALPEGSTFEPLMTLYLTEQTDPDDVAAAHASGLIKAVKLYPAGATTNSSSGVSHFDSVRPTLERMAEIGLPLCVHGEVTDSDIDIFDREAVFIDRVLDPIRRTTPGLRVVMEHITTSNAVEYARSQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 221
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: dihydroorotase (n=1 Tax=Tateyamaria pelophila TaxID=328415 RepID=UPI001CBF5460)

HSP 1 Score: 321 bits (822), Expect = 5.530e-108
Identity = 156/177 (88.14%), Postives = 168/177 (94.92%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVTSAQA AYRDRI+AALPEG  F PLMTLYLTE +DP+D+AAAHASGL+KAVKLYPAGATTNSASGV++FD+V P L+RMA IGLPLCVHGEVTDHD+DIFDREAVFIDRVLDPIRRATPGLRV+MEHITT+NAVDYARAQ DTLGATITTHHLVINRNHILAGGIKPHYYCLP
Sbjct:   44 PPVVTSAQAAAYRDRIMAALPEGMDFTPLMTLYLTEDTDPDDVAAAHASGLVKAVKLYPAGATTNSASGVANFDKVRPTLDRMAAIGLPLCVHGEVTDHDVDIFDREAVFIDRVLDPIRRATPGLRVVMEHITTRNAVDYARAQGDTLGATITTHHLVINRNHILAGGIKPHYYCLP 220
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: Dihydroorotase (n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A254QMB9_9RHOB)

HSP 1 Score: 318 bits (816), Expect = 5.140e-107
Identity = 158/177 (89.27%), Postives = 165/177 (93.22%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVT AQA AYRDRILAALPEG  FEPLMTLYLTE +DP D+AAAHASGL+KAVKLYPAGATTNSASGVSHFDRV PVLE+MAEIGLPLCVHGEVT  D+DIFDREAVFIDRVLDPIRRATPGLRV+MEHITT +AVDYARAQ D LGATITTHHLVINRNHILAGGIKPHYYCLP
Sbjct:   45 PPVVTGAQASAYRDRILAALPEGMPFEPLMTLYLTEDTDPEDVAAAHASGLVKAVKLYPAGATTNSASGVSHFDRVRPVLEKMAEIGLPLCVHGEVTASDVDIFDREAVFIDRVLDPIRRATPGLRVVMEHITTSDAVDYARAQGDDLGATITTHHLVINRNHILAGGIKPHYYCLP 221
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: Dihydroorotase (n=6 Tax=Tateyamaria TaxID=299261 RepID=A0A0B4D166_9RHOB)

HSP 1 Score: 315 bits (807), Expect = 1.050e-105
Identity = 154/177 (87.01%), Postives = 167/177 (94.35%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVT  QA AYRDRILAALP+G TFEPLMTLYLTE +D +D+AAAH SGL+KAVKLYPAGATTNSASGV++FD+V PVLERMAEIGLPLCVHGEVTD DIDIFDREAVFIDRVLDPIRRATPGLRV+MEHITT N+VDYARAQD++LGATITTHHLVINRNHILAGGI+PHYYCLP
Sbjct:   44 PPVVTGTQAAAYRDRILAALPDGMTFEPLMTLYLTEDTDADDVAAAHTSGLVKAVKLYPAGATTNSASGVTNFDKVRPVLERMAEIGLPLCVHGEVTDRDIDIFDREAVFIDRVLDPIRRATPGLRVVMEHITTLNSVDYARAQDNSLGATITTHHLVINRNHILAGGIRPHYYCLP 220
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BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: Dihydroorotase (n=5 Tax=Rhodobacterales TaxID=204455 RepID=A0A0P6RS84_9RHOB)

HSP 1 Score: 314 bits (805), Expect = 2.330e-105
Identity = 152/177 (85.88%), Postives = 163/177 (92.09%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVT AQA AYRDRILAALPEG  FEPLMTLYLTE +DP D+AAAHASGL+KAVKLYPAGATTNS+SGVS+FD+V PVLE+MAEIGLPLC HGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRV+MEHITTKNA DY  +Q+  LGATITTHHL+INRNHIL GGIKPHYYCLP
Sbjct:   45 PPVVTGAQAAAYRDRILAALPEGMAFEPLMTLYLTEDTDPEDVAAAHASGLVKAVKLYPAGATTNSSSGVSNFDKVRPVLEKMAEIGLPLCTHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVVMEHITTKNAADYVASQEQDLGATITTHHLIINRNHILVGGIKPHYYCLP 221
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: Dihydroorotase (n=1 Tax=Tritonibacter horizontis TaxID=1768241 RepID=A0A132BVA0_9RHOB)

HSP 1 Score: 314 bits (804), Expect = 3.300e-105
Identity = 152/177 (85.88%), Postives = 163/177 (92.09%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVT  QA AYRDRILAALP+G TFEPLMTLYLTE +DP D+AAAHASGL+KAVKLYPAGATTNSASGV+ FD+V PVLE+MA+IGLPLC HGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRV+MEHITTKNA DY R+QD  LGATITTHHL+INRNHIL GGIKPHYYCLP
Sbjct:   45 PPVVTGDQAAAYRDRILAALPDGMTFEPLMTLYLTEDTDPADVAAAHASGLVKAVKLYPAGATTNSASGVTDFDKVRPVLEKMADIGLPLCTHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVVMEHITTKNAADYVRSQDSDLGATITTHHLIINRNHILVGGIKPHYYCLP 221
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: Dihydroorotase (n=1 Tax=Seohaeicola zhoushanensis TaxID=1569283 RepID=A0A8J3GV01_9RHOB)

HSP 1 Score: 311 bits (797), Expect = 3.690e-104
Identity = 154/177 (87.01%), Postives = 163/177 (92.09%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVT AQA AYRDRILAALPEG TFEPLMTLYLTEA+DP D+AAAHASGL+KAVKLYPAGATTNSASGV  FD+V  VLE+MAEIGLPLC+HGEV D  +DIFDREAVFIDRVLDPIRRATPGLRV+MEHITT NAVDYARAQ D LGATITTHHLVINRNHILAGGI+PHYYCLP
Sbjct:   45 PPVVTGAQAAAYRDRILAALPEGMTFEPLMTLYLTEATDPADVAAAHASGLVKAVKLYPAGATTNSASGVKDFDKVRGVLEKMAEIGLPLCMHGEVVDSHVDIFDREAVFIDRVLDPIRRATPGLRVVMEHITTANAVDYARAQGDDLGATITTHHLVINRNHILAGGIRPHYYCLP 221
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: Dihydroorotase (n=1 Tax=Pseudooceanicola sp. TaxID=1914328 RepID=A0A2E2PCQ8_9RHOB)

HSP 1 Score: 311 bits (797), Expect = 4.200e-104
Identity = 154/177 (87.01%), Postives = 164/177 (92.66%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVT AQA AYRDRILAALP+G  FEPLMTLYLTE +DP D+AAAHASGL+KAVKLYPAGATTNSASGV++FD V  VLERMAEIGLP+CVHGEVTD +IDIFDREAVFIDRVLDPIRRATPGLRV+MEHITT NAVDYARAQ D LGATITTHHLVINRNHILAGGI+PHYYCLP
Sbjct:   45 PPVVTGAQASAYRDRILAALPDGMAFEPLMTLYLTEDTDPEDVAAAHASGLVKAVKLYPAGATTNSASGVTNFDNVRGVLERMAEIGLPMCVHGEVTDPEIDIFDREAVFIDRVLDPIRRATPGLRVVMEHITTSNAVDYARAQGDDLGATITTHHLVINRNHILAGGIRPHYYCLP 221
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: Dihydroorotase (n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A073J5M6_9RHOB)

HSP 1 Score: 311 bits (796), Expect = 5.070e-104
Identity = 154/177 (87.01%), Postives = 164/177 (92.66%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVT AQA AYRDRI+AALPEG  F PLMTLYLTE ++  D+AAAHASGL+KAVKLYPAGATTNSASGV++FD V PVLE+MAEIGLPLCVHGEVTD DIDIFDREAVFIDRVLDPIRRATPGLRV+MEHITT +AVDYA AQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP
Sbjct:   45 PPVVTGAQAAAYRDRIMAALPEGMDFTPLMTLYLTEDTEAADVAAAHASGLVKAVKLYPAGATTNSASGVANFDNVRPVLEKMAEIGLPLCVHGEVTDADIDIFDREAVFIDRVLDPIRRATPGLRVVMEHITTSDAVDYASAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 221
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Match: dihydroorotase (n=1 Tax=Tateyamaria sp. Alg231-49 TaxID=1922219 RepID=UPI000D55EE01)

HSP 1 Score: 310 bits (794), Expect = 9.870e-104
Identity = 150/177 (84.75%), Postives = 167/177 (94.35%), Query Frame = 1 
Query:    1 PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASGLIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHDIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLP 531
            PPVVT AQA+AYRDRI+AALPEG +FEPLMTLYLTE +DP+D+AAAHASGL+KAVKLYPAGATTNSASGV+ F ++   L+RMA+IGLPLCVHGEVTD +IDIFDREAVFIDRVLDP+RRATPGL+V+MEHITT NAVDYARAQDD+LGATITTHHLVINRNHILAGGIKPHYYCLP
Sbjct:   44 PPVVTGAQAMAYRDRIMAALPEGMSFEPLMTLYLTEDTDPDDVAAAHASGLVKAVKLYPAGATTNSASGVADFGKIRATLDRMAQIGLPLCVHGEVTDANIDIFDREAVFIDRVLDPLRRATPGLKVVMEHITTSNAVDYARAQDDSLGATITTHHLVINRNHILAGGIKPHYYCLP 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75792.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dihydroorotase8.580e-11089.27(Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071... [more]
dihydroorotase5.530e-10888.14n=1 Tax=Tateyamaria pelophila TaxID=328415 RepID=U... [more]
Dihydroorotase5.140e-10789.27n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A25... [more]
Dihydroorotase1.050e-10587.01n=6 Tax=Tateyamaria TaxID=299261 RepID=A0A0B4D166_... [more]
Dihydroorotase2.330e-10585.88n=5 Tax=Rhodobacterales TaxID=204455 RepID=A0A0P6R... [more]
Dihydroorotase3.300e-10585.88n=1 Tax=Tritonibacter horizontis TaxID=1768241 Rep... [more]
Dihydroorotase3.690e-10487.01n=1 Tax=Seohaeicola zhoushanensis TaxID=1569283 Re... [more]
Dihydroorotase4.200e-10487.01n=1 Tax=Pseudooceanicola sp. TaxID=1914328 RepID=A... [more]
Dihydroorotase5.070e-10487.01n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A07... [more]
dihydroorotase9.870e-10484.75n=1 Tax=Tateyamaria sp. Alg231-49 TaxID=1922219 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75792contigH-canaliculatus_M_contigs75792:3..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1402135.SUH3_02800
Preferred namepyrC
PFAMsAmidohydro_1
Model size531
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00632
KEGG koko:K01465
KEGG ReactionR01993
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.31e-105
EggNOG OGsCOG0418@1|root,COG0418@2|Bacteria,1MUYP@1224|Proteobacteria,2TT2U@28211|Alphaproteobacteria,3ZVDS@60136|Sulfitobacter
EC3.5.2.3
DescriptionCatalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate
Cds size531
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.25249-CDS-H-canaliculatus_M_contigs75792:2..5331696854095.25249-CDS-H-canaliculatus_M_contigs75792:2..533Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75792 3..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75792.1.1prot_H-canaliculatus_M_contigs75792.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75792 3..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75792.1.1

>prot_H-canaliculatus_M_contigs75792.1.1 ID=prot_H-canaliculatus_M_contigs75792.1.1|Name=mRNA_H-canaliculatus_M_contigs75792.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=177bp
PPVVTSAQAVAYRDRILAALPEGATFEPLMTLYLTEASDPNDIAAAHASG
LIKAVKLYPAGATTNSASGVSHFDRVAPVLERMAEIGLPLCVHGEVTDHD
IDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKNAVDYARAQDDTLGA
TITTHHLVINRNHILAGGIKPHYYCLP
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mRNA from alignment at H-canaliculatus_M_contigs75792:3..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75792.1.1 ID=mRNA_H-canaliculatus_M_contigs75792.1.1|Name=mRNA_H-canaliculatus_M_contigs75792.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=531bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75792:3..533- (Hapterophycus canaliculatus Oshoro7m male)
CCCCCCGTGGTCACCAGTGCGCAGGCGGTCGCGTATCGTGATCGCATTCT
CGCGGCCCTGCCAGAGGGTGCGACGTTTGAACCGTTGATGACCCTGTATT
TGACCGAAGCTTCTGATCCAAACGACATCGCGGCCGCACACGCATCTGGC
CTGATCAAGGCCGTGAAACTGTATCCAGCCGGTGCCACGACGAATTCCGC
CTCGGGTGTTAGCCACTTTGACCGCGTCGCCCCTGTGCTCGAACGTATGG
CCGAGATTGGCCTGCCCCTGTGCGTCCACGGCGAAGTCACCGATCACGAC
ATCGACATTTTCGACCGAGAGGCCGTCTTCATCGACCGCGTGCTCGACCC
GATCCGCCGCGCCACACCGGGCCTGCGCGTGATCATGGAACACATCACCA
CCAAAAACGCCGTCGATTACGCACGCGCCCAAGACGACACGCTTGGAGCC
ACAATCACCACGCACCACTTGGTGATCAACAGAAACCACATTCTGGCCGG
CGGAATCAAACCGCACTATTATTGCTTGCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75792:3..533-

>mRNA_H-canaliculatus_M_contigs75792.1.1 ID=mRNA_H-canaliculatus_M_contigs75792.1.1|Name=mRNA_H-canaliculatus_M_contigs75792.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=531bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75792:3..533- (Hapterophycus canaliculatus Oshoro7m male)
CCCCCCGTGGTCACCAGTGCGCAGGCGGTCGCGTATCGTGATCGCATTCT
CGCGGCCCTGCCAGAGGGTGCGACGTTTGAACCGTTGATGACCCTGTATT
TGACCGAAGCTTCTGATCCAAACGACATCGCGGCCGCACACGCATCTGGC
CTGATCAAGGCCGTGAAACTGTATCCAGCCGGTGCCACGACGAATTCCGC
CTCGGGTGTTAGCCACTTTGACCGCGTCGCCCCTGTGCTCGAACGTATGG
CCGAGATTGGCCTGCCCCTGTGCGTCCACGGCGAAGTCACCGATCACGAC
ATCGACATTTTCGACCGAGAGGCCGTCTTCATCGACCGCGTGCTCGACCC
GATCCGCCGCGCCACACCGGGCCTGCGCGTGATCATGGAACACATCACCA
CCAAAAACGCCGTCGATTACGCACGCGCCCAAGACGACACGCTTGGAGCC
ACAATCACCACGCACCACTTGGTGATCAACAGAAACCACATTCTGGCCGG
CGGAATCAAACCGCACTATTATTGCTTGCCC
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