mRNA_H-canaliculatus_M_contigs7573.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7573.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7573.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7573.2.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SYR5_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 5.900e-5
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:  181 DLVELMLRDGYHVDQLDDDGCTPLQIAAGLGLADVTKALLAAGADVTLRD 330
            D V  ++R G  VD  D DGCTPL +AA LGL D  +ALLA GA + ++D
Sbjct:   57 DFVTRLIRRGAMVDPADHDGCTPLMLAARLGLEDCAEALLAEGALLGVKD 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7573.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical5.900e-552.00protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7573contigH-canaliculatus_M_contigs7573:4221..4556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog39416.CAZ84672
PFAMsAnk,Ank_2,Ank_3,Ank_4,Pkinase
Model size336
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.58e-06
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,3A765@33154|Opisthokonta,3PBXJ@4751|Fungi,3QU36@4890|Ascomycota
Descriptionankyrin repeats
Cds size336
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854094.5671527-CDS-H-canaliculatus_M_contigs7573:4220..45561696854094.5671527-CDS-H-canaliculatus_M_contigs7573:4220..4556Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7573 4221..4556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7573.2.1prot_H-canaliculatus_M_contigs7573.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7573 4221..4556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7573.2.1

>prot_H-canaliculatus_M_contigs7573.2.1 ID=prot_H-canaliculatus_M_contigs7573.2.1|Name=mRNA_H-canaliculatus_M_contigs7573.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
QQQQTRKKEERPALDVEPGSYTTQMRMDDLEYVDRSRGAASPRFGPFLYP
LRSATYMGRADLVELMLRDGYHVDQLDDDGCTPLQIAAGLGLADVTKALL
AAGADVTLRDSL
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mRNA from alignment at H-canaliculatus_M_contigs7573:4221..4556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7573.2.1 ID=mRNA_H-canaliculatus_M_contigs7573.2.1|Name=mRNA_H-canaliculatus_M_contigs7573.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7573:4221..4556- (Hapterophycus canaliculatus Oshoro7m male)
CAGCAGCAGCAGACACGAAAGAAGGAGGAACGACCGGCGCTCGATGTCGA
ACCCGGGAGCTACACTACCCAAATGCGGATGGACGACTTGGAGTATGTGG
ATCGATCACGTGGCGCTGCAAGCCCTCGCTTCGGACCTTTCCTCTACCCT
CTCCGCAGTGCCACCTACATGGGTAGGGCTGATCTGGTGGAACTCATGTT
AAGGGATGGGTATCATGTAGACCAGTTGGATGACGACGGATGCACACCGC
TTCAAATTGCGGCGGGCTTGGGCCTCGCGGACGTGACAAAAGCTCTTCTG
GCTGCTGGCGCGGATGTAACCCTCCGAGATAGTCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7573:4221..4556-

>mRNA_H-canaliculatus_M_contigs7573.2.1 ID=mRNA_H-canaliculatus_M_contigs7573.2.1|Name=mRNA_H-canaliculatus_M_contigs7573.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7573:4221..4556- (Hapterophycus canaliculatus Oshoro7m male)
CAGCAGCAGCAGACACGAAAGAAGGAGGAACGACCGGCGCTCGATGTCGA
ACCCGGGAGCTACACTACCCAAATGCGGATGGACGACTTGGAGTATGTGG
ATCGATCACGTGGCGCTGCAAGCCCTCGCTTCGGACCTTTCCTCTACCCT
CTCCGCAGTGCCACCTACATGGGTAGGGCTGATCTGGTGGAACTCATGTT
AAGGGATGGGTATCATGTAGACCAGTTGGATGACGACGGATGCACACCGC
TTCAAATTGCGGCGGGCTTGGGCCTCGCGGACGTGACAAAAGCTCTTCTG
GCTGCTGGCGCGGATGTAACCCTCCGAGATAGTCTC
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