mRNA_H-canaliculatus_M_contigs7573.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: AAA (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE) HSP 1 Score: 357 bits (915), Expect = 3.660e-110 Identity = 270/419 (64.44%), Postives = 294/419 (70.17%), Query Frame = 1
Query: 1 QDYEARTARAAKSNILHSFADGRQLGATGRTTQASAGGCQGDRALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAP--YGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLAHREDAAKAGKNAAADPFTAAASTAR-KAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANKKFRDIEKDRPVHPVPFWNRTNWISGRKDGTGSRSSGGSNGNHKAATAAGKESTRVDPLDGVKSPAKRAVSEV-------AGTIGGTGKGKSESRLGAKAAAEPSKRARQEGAGKAG------ADEGVGKARIRYQFRAGYTNAVRRPVRMRDLL 1209
+DYEARTARAAKSNILHSFADGRQLGATGRTTQA LVLDMLSHLMDILAPTLRPLNPDLLSPQERARFR LVG LLSCGLTF+PQSA S+ S+A AP +GAA GAQEFALEPAIDQLL YEGY+FAHPRLAPPLRPMVAHEV LEGMR+AEA+KL+HREDAA A KN A+DPF AA+S R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA KFRD E DRP HPVPFWNRTNWISGRKDGTGSR G + AA K+S +D KSP+K +V+++ AG+I + ++ AAE SKR R EG + G A G GK IRYQFRAGYTNAVRRPVRMRDLL
Sbjct: 686 KDYEARTARAAKSNILHSFADGRQLGATGRTTQA----------LVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRELVGILLSCGLTFSPQSA-----SSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYEFAHPRLAPPLRPMVAHEVALEGMRKAEAAKLSHREDAAFA-KNEASDPFAAASSATRGTGHPFTTKAGKSSGAQAASGKSTSEADENGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTKFRDSENDRPAHPVPFWNRTNWISGRKDGTGSRRDAGDD------AAAVKQSAAIDFTHDTKSPSKSSVNKLCETPAVQAGSISCSATDGHQA-----TAAERSKRVRHEGVARRGTVEDEEAGSGKGKIPIRYQFRAGYTNAVRRPVRMRDLL 1077
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: chromosome (transmission fidelity protein 18 homolog isoform X1 n=2 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F45B57) HSP 1 Score: 65.5 bits (158), Expect = 1.010e-7 Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query: 121 GDRALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLAHREDAAKAGKNA 540
G RALVL+ L L+DI++P LRP+N L S +E+ + GL+GT+LS LT+ + A G + L+P ++ + + A RL + ++A E+ LE MR+AEA+ A AG+ A
Sbjct: 775 GPRALVLEALCPLLDIISPKLRPINTQLYSAKEKQQLAGLIGTMLSYNLTYLQERTAD-----------------GQYVYTLDPNVEAVCRFPDLP-ARKRLTYQAKQLIAREIELEKMRRAEAAVQARNPSRPTAGERA 896
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: Chromosome (transmission fidelity n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIW5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.580e-7 Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 1 QDYEARTARAAKSNILHSFADGRQLGATGRTTQASAGGCQGDRALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTF 273
+D+E R+AR ++ +IL SF +G L A + +VLD++S LM IL P+LRP+NPDL S E+A R LV LL+CG+++
Sbjct: 424 KDHEYRSARLSRQHILQSFGEGCSLQALW---------ARRPTPVVLDVVSPLMHILNPSLRPVNPDLYSFAEKAGLRHLVDVLLACGISY 505
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU49_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.850e-7 Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 1 QDYEARTARAAKSNILHSFADGRQLGATGRTTQASAGGCQGDRALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTF 273
+D+E R+AR ++ +IL SF +G L A + +VLD++S LM IL P LRP+NPDL S E+A R LV LL+CG+++
Sbjct: 825 KDHEYRSARLSRQHILQSFGEGCSL---------QAMWARRPTPVVLDVVSPLMHILNPNLRPVNPDLYSFAEKAGLRHLVDVLLACGISY 906
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: chromosome (transmission fidelity protein 18 homolog isoform X1 n=4 Tax=Catharus ustulatus TaxID=91951 RepID=UPI00140B0898) HSP 1 Score: 60.8 bits (146), Expect = 2.940e-6 Identity = 49/155 (31.61%), Postives = 75/155 (48.39%), Query Frame = 1
Query: 40 NILHSFADGRQLGATGRTTQASAGGCQGDRALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLA 504
N+L S G GA GR G + LVLD+LS L+DI+AP LRP+N L S +E+ + L+ T+L+ LT+ + G F L+P ++ + + A +L+ + ++A E+ LE MR+AEA LA
Sbjct: 720 NVLLSVVSGMAPGARGRA---------GLQELVLDVLSLLLDIIAPRLRPVNTQLYSLKEKQQLAELISTMLTYNLTYLQERLPE-----------------GQYVFKLDPNVEAVCRFPALP-ARRQLSYQAKQLIAREIELEKMRRAEARNLA 847
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: Chromosome (transmission fidelity factor 18 n=27 Tax=Feliformia TaxID=379583 RepID=A0A5F5XUW8_FELCA) HSP 1 Score: 60.5 bits (145), Expect = 3.920e-6 Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 1
Query: 127 RALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEA 492
+ALVLD+L L+DILAP LRP++ L S +E+ + GLVGT+L+ LT+ + G + LEP ++++ + P L + ++AHE+ +E MR+AEA
Sbjct: 764 QALVLDVLCLLLDILAPKLRPVSTQLYSTREKQQLAGLVGTMLAYSLTYRQERMPD-----------------GHYVYRLEPNVEEVCRFPELPARKP-LTYQAKQLIAHEIEMEKMRRAEA 867
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: Chromosome (transmission fidelity factor 18 n=1 Tax=Canis lupus dingo TaxID=286419 RepID=A0A8C0K4R8_CANLU) HSP 1 Score: 60.1 bits (144), Expect = 4.540e-6 Identity = 47/164 (28.66%), Postives = 79/164 (48.17%), Query Frame = 1
Query: 1 QDYEARTARAAKSNILHSFADGRQLGATGRTTQASAGGCQGDRALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEA 492
Q+ ++RT+R N++H+ G R T +AL+LD L ++DILAP LRP++ L S +E+ + LVGT+L+ LT+ + G + LEP ++++ + P L + ++AHE+ +E MR+AEA
Sbjct: 462 QEAQSRTSRT--QNLIHTLVAGIAPATRSRATP---------QALILDALCLILDILAPKLRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERRPD-----------------GQYIYRLEPNVEEVCRFPELPARKP-LTYQAKQLIAHEIEMEKMRRAEA 596
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: chromosome (transmission fidelity protein 18 homolog n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00033167F5) HSP 1 Score: 60.1 bits (144), Expect = 5.020e-6 Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 1
Query: 127 RALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEA 492
+ALVLD L L+DILAP LRP++ L S +E+ + LVGT+L+ LT+ + TP G + LEP ++++ + P L + ++AHEV +E MR+AEA
Sbjct: 644 QALVLDTLCLLLDILAPRLRPVSTQLFSTREKEQLASLVGTMLAYSLTYRQER-------TPE----------GQYVYRLEPNVEEVCRFPELPVRKP-LTYQAKQLIAHEVEVEKMRRAEA 747
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: Chromosome (transmission fidelity factor 18 n=4 Tax=Canidae TaxID=9608 RepID=A0A8C0K4N8_CANLU) HSP 1 Score: 60.1 bits (144), Expect = 5.420e-6 Identity = 47/164 (28.66%), Postives = 79/164 (48.17%), Query Frame = 1
Query: 1 QDYEARTARAAKSNILHSFADGRQLGATGRTTQASAGGCQGDRALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEA 492
Q+ ++RT+R N++H+ G R T +AL+LD L ++DILAP LRP++ L S +E+ + LVGT+L+ LT+ + G + LEP ++++ + P L + ++AHE+ +E MR+AEA
Sbjct: 904 QEAQSRTSRT--QNLIHTLVAGIAPATRSRATP---------QALILDALCLILDILAPKLRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERRPD-----------------GQYIYRLEPNVEEVCRFPELPARKP-LTYQAKQLIAHEIEMEKMRRAEA 1038
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Match: Chromosome (transmission fidelity protein 18 homolog n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3Z9D6_9TELE) HSP 1 Score: 59.7 bits (143), Expect = 6.310e-6 Identity = 41/141 (29.08%), Postives = 70/141 (49.65%), Query Frame = 1
Query: 85 GRTTQASAGGCQGDRALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLAH 507
GR A+ G G R L LDMLS L+++++P LRP+NP L S +E+ + L+ +++ L++ + A G + LEP ++ ++ + G +L + +VA E LE MR+AE ++ H
Sbjct: 537 GRGVPAAVRGRVGQRTLCLDMLSLLLELISPKLRPVNPQLYSSREKQQLCDLIDNMINYNLSYRQERTAD-----------------GQYVYVLEPNVEDVVRFPGLP-PRRQLTYQAKQLVARETELERMRRAERAQQRH 659 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7573.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7573.1.1 >prot_H-canaliculatus_M_contigs7573.1.1 ID=prot_H-canaliculatus_M_contigs7573.1.1|Name=mRNA_H-canaliculatus_M_contigs7573.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=404bp QDYEARTARAAKSNILHSFADGRQLGATGRTTQASAGGCQGDRALVLDMLback to top mRNA from alignment at H-canaliculatus_M_contigs7573:203..3607+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7573.1.1 ID=mRNA_H-canaliculatus_M_contigs7573.1.1|Name=mRNA_H-canaliculatus_M_contigs7573.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3405bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7573:203..3607+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7573:203..3607+ >mRNA_H-canaliculatus_M_contigs7573.1.1 ID=mRNA_H-canaliculatus_M_contigs7573.1.1|Name=mRNA_H-canaliculatus_M_contigs7573.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7573:203..3607+ (Hapterophycus canaliculatus Oshoro7m male)back to top |