mRNA_H-canaliculatus_M_contigs757.4.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE) HSP 1 Score: 348 bits (892), Expect = 1.810e-106 Identity = 174/274 (63.50%), Postives = 200/274 (72.99%), Query Frame = 3
Query: 516 REKLRSFFSGGNSGLWACTATGDTHLVCHKIAFIPLLEQTAT---TENPRGGYEDEGVSAGTEDPAGDAAAGDGRRERENDVFISMGAQGGTXXXXXXXXXXNYDASPKSRIGASRMDKVECGGAVLSLGISRDDRFVMVNVRPFVNGALEKLHQPDQRNTVPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQSMADPFGDYVCSGSEEHRVFVWHLRHRLLLGALKGHTDVVNSVSWNPKYAGMMASCSDDGTVIIWGPRVR 1328
R FF NSGLWAC ATGDT ++CH++AFIPL+E TA+ + + R G G++D DG E DVFI + G AS + ++ A RM+ VECGGAVLSL ++RDDRF+MVNVRPF+ GAL+KL++P+ R+T P+ISNEIELQVWDVATKKL FKLGGHHAFTTKDCPFLI AQS ADPFGDYVCSGSEEHRVFVWHLRHRLLLG LKGH DVVNSVSWNPKY GMM+SCSDDGT IIWGPRVR
Sbjct: 792 RRNFAHFFQMSNSGLWACVATGDTPMMCHRVAFIPLMEATASPPKSTSTRPAAMSPGDPGGSDDD-------DGSGNDEKDVFIHVLRSGSGGDA----------ASLQPKVTARRMEAVECGGAVLSLSLTRDDRFIMVNVRPFMKGALDKLYRPEGRHTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPRVR 1048
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI) HSP 1 Score: 342 bits (877), Expect = 1.020e-104 Identity = 174/283 (61.48%), Postives = 200/283 (70.67%), Query Frame = 3
Query: 480 GNAGRRRDPTHHREKLRSFFSGGNSGLWACTATGDTHLVCHKIAFIPLLEQTATTENPRGGYEDEGVSAGTEDPAGDAAAGDGRRERENDVFISMGAQGGTXXXXXXXXXXNYDASPKSRIGASRMDKVECGGAVLSLGISRDDRFVMVNVRPFVNGALEKLHQPDQRNTVPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQSMADPFGDYVCSGSEEHRVFVWHLRHRLLLGALKGHTDVVNSVSWNPKYAGMMASCSDDGTVIIWGPRVR 1328
G+A RR ++LR+FF NSG WAC ATGDT ++CH++AFIPL E A+ +S G + E DVFI + G AS + ++ A RM+ VECGGAVLSL ++RDDRF+MVNVRPF+ GAL+KLH+P+ R+T P+ISNEIELQVWDVATKKL FKLGGHHAFTTKDCPFLI AQS ADPFGDYVCSGSEEHRVFVWHLRHRLLLG LKGH DVVNSVSWNPKY GMM+SCSDDGT IIWGPRVR
Sbjct: 722 GDAAGRRGSAQPSQELRAFFP-SNSGSWACVATGDTPMMCHRVAFIPLGEARASPPKSTS-TRPAAISPGDPGVSDXXXXXXXXXXXEKDVFIRVLRSGSGGDA----------ASLQPKVTARRMEAVECGGAVLSLSVTRDDRFIMVNVRPFMKGALDKLHRPEGRHTAPEISNEIELQVWDVATKKLAFKLGGHHAFTTKDCPFLIMAAQSAADPFGDYVCSGSEEHRVFVWHLRHRLLLGVLKGHEDVVNSVSWNPKYPGMMSSCSDDGTAIIWGPRVR 992
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FQF2_9STRA) HSP 1 Score: 143 bits (360), Expect = 2.740e-36 Identity = 77/173 (44.51%), Postives = 103/173 (59.54%), Query Frame = 3
Query: 864 VECGGAVLSLGISRDDRFVMVNVRPFVNGALEKLHQ-PDQRNTVPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQS-----------------MADPFG-DYVCSGSEEHRVFVWHLRHRLLLGALKG-HTDVVNSVSWNPKYAGMMASCSDDGTVIIWGPR 1322
++C +LSL IS D FV VN RPF++ + + + P + PDIS +++LQVW+++++ + L GH FTTK+CPFL+FT + A F DY+CSGSE V +WHLRH+ L+ L G HTDVVNSVSWN M+AS SDD TV IWG R
Sbjct: 63 IDCVAVILSLRISEDGCFVFVNTRPFLDDSYKPPFKVPPEHLPAPDISTKVQLQVWEISSRTKVMTLTGHRGFTTKECPFLLFTDEGGHTRNTTAAGNQNAGADAAIVFSRDYICSGSECAAVHIWHLRHQRLITMLSGGHTDVVNSVSWNRHVDAMLASASDDQTVCIWGSR 235
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: Hypothetical (protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IYS7_POLGL) HSP 1 Score: 104 bits (260), Expect = 7.340e-22 Identity = 67/160 (41.88%), Postives = 89/160 (55.62%), Query Frame = 3
Query: 843 GASRMDKVECGGAVLSLGISRDDRFVMVNVRPFVNGAL---EKLHQPDQRNTVPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQSMADPFGDYVCSGSEEHRVFVWHLRHRLLLGALKGHTDVVNSVSWNPKYAGMMASCSDDGTVIIW 1313
G SR E GG V S S D +P G++ E L +P PD+S +EL + D + ++ GH AFTTK+ PFLIFT + D++ SG E+HRV+VWH RHR L+ L GHT+ VN+VSWN G++AS SDD +IIW
Sbjct: 112 GGSRAGAGERGGDVRSATSSGVDGEAP---QPPSRGSISFQELLERP-----APDLSTTMELLLLDANSLDIIGLFDGHFAFTTKESPFLIFTDEWANS---DFLASGGEDHRVYVWHRRHRRLIRRLCGHTEPVNAVSWNGN--GLLASASDDKQIIIW 258
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: WDR26 (protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812MSZ5_9DINO) HSP 1 Score: 105 bits (261), Expect = 1.430e-21 Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 3
Query: 882 VLSLGISRDDRFVMVNVRPF---VNGALEKLHQPDQRNT---------------VPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQSMADPFGDYVCSGSEEHRVFVWHLRHRLLLGALKGHTDVVNSVSWNPKYAGMMASCSDDGTVIIW 1313
VLS + F+++N RP+ V+G+ + Q + PD+S ++EL + D T ++ GH AFTTK+ PFLIFT + +D D++ SG E+HRV++WH RH L+ L GH + VN+VSWN + G++AS SDD +IIW
Sbjct: 141 VLSAKWNEAGDFILLNTRPYAHAVSGSQKTGGQSEASQASLQAGASFEDLLLRPAPDLSTKMELLLLDARTLDVVSVFDGHFAFTTKESPFLIFT-EEWSD--SDFLASGGEDHRVYIWHRRHGRLIRRLCGHAEPVNAVSWNGR--GLLASASDDNGIIIW 297
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: Wdr26 (protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812H3E1_9DINO) HSP 1 Score: 107 bits (268), Expect = 3.220e-21 Identity = 66/173 (38.15%), Postives = 96/173 (55.49%), Query Frame = 3
Query: 882 VLSLGISRDDRFVMVNVRPFVN---GALEKLHQPDQRNT------------------VPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQSMADPFGDYVCSGSEEHRVFVWHLRHRLLLGALKGHTDVVNSVSWNPKYAGMMASCSDDGTVIIW---GPRVR 1328
VLS + F+++N RP+ + G+ + D +T PD+S ++EL + D T +L GH AFTTK+ PFLIFT + +D D++ SG E+HRV+VWH RH L+ L GH + VN+VSWN + G++AS SDD ++IIW G +VR
Sbjct: 1209 VLSAKWNEAGDFILLNTRPYAHAASGSNKNGGHGDASHTSQAPLQGSATFEDLLLRPAPDLSTKMELLLLDARTLDILSVFDGHFAFTTKESPFLIFT-EEWSD--SDFLASGGEDHRVYVWHRRHGRLIRRLCGHAEPVNAVSWNGQ--GLLASASDDNSIIIWAAAGAKVR 1376
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZR2_VITBC) HSP 1 Score: 106 bits (265), Expect = 7.530e-21 Identity = 73/242 (30.17%), Postives = 104/242 (42.98%), Query Frame = 3
Query: 864 VECGGAVLSLGISRDDRFVMVNVRPFVNGALEKLHQPDQRNTV----PDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFT----------------------------------------------------AQSMAD--------------------PFG------------DYVCSGSEEHRVFVWHLRHRLLLGAL-KGHTDVVNSVSWNPKYAGMMASCSDDGTVIIWGPR 1322
++ VL+L +++D +F++VN RPF +L D+ + V PD+ + +E+ ++ + T + L GH AFTTK CPFLI A +M D P G D+V SGSE+HRV+VWH+RH+ L+ L GHTDVVNSVSWN G++ASC D+G V +W PR
Sbjct: 1021 IDARAGVLTLRVTQDGQFLLVNCRPFEGSQYLRLRLLDRLSAVRQPKPDLKSAMEVHIYHIPTLTKVAVLKGHVAFTTKACPFLINLMEGGPGPDLPFPPIHHTRDTHDHPAXXXXXXXXXXXXXXXXXXXXXXXXXRDADAMMDQDEPSDGQEPSSSCVEGARRPAGVCGQQQPPWRCYDFVASGSEDHRVYVWHMRHQRLVSILANGHTDVVNSVSWNSGVPGLLASCGDEGHVCLWSPR 1262
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: Wdr26 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813B4T2_SYMMI) HSP 1 Score: 104 bits (260), Expect = 2.970e-20 Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 3
Query: 882 VLSLGISRDDRFVMVNVRPF---VNGALEKLHQPDQRNT---------------VPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQSMADPFGDYVCSGSEEHRVFVWHLRHRLLLGALKGHTDVVNSVSWNPKYAGMMASCSDDGTVIIW 1313
VLS + F+++N RP+ V+G+ + Q + PD+S ++EL + D T ++ GH AFTTK+ PFLIFT + +D D++ SG E+HRV++WH RH L+ L GH + VN+VSWN + G++AS SDD +IIW
Sbjct: 854 VLSAKWNEAGDFILLNTRPYAHAVSGSQKTGGQGEASQASLQAGASFEDLLLRPAPDLSTKMELLLLDARTLDVVSVFDGHFAFTTKESPFLIFT-EEWSD--SDFLASGGEDHRVYIWHRRHGRLIRRLCGHAEPVNAVSWNGR--GLLASASDDNGIIIW 1010
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: Wdr26 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CRT9_9DINO) HSP 1 Score: 104 bits (260), Expect = 3.130e-20 Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 3
Query: 882 VLSLGISRDDRFVMVNVRPF---VNGALEKLHQPDQRNT---------------VPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQSMADPFGDYVCSGSEEHRVFVWHLRHRLLLGALKGHTDVVNSVSWNPKYAGMMASCSDDGTVIIW 1313
VLS + F+++N RP+ V+G+ + Q + PD+S ++EL + D T ++ GH AFTTK+ PFLIFT + +D D++ SG E+HRV++WH RH L+ L GH + VN+VSWN + G++AS SDD +IIW
Sbjct: 1000 VLSAKWNEAGDFILLNTRPYAHAVSGSQKTGGQGEASQASLQAGASFEDLLLRPAPDLSTKMELLLLDARTLDVVSVFDGHFAFTTKESPFLIFT-EEWSD--SDFLASGGEDHRVYIWHRRHGRLIRRLCGHAEPVNAVSWNGR--GLLASASDDNGIIIW 1156
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SA30_ALECA) HSP 1 Score: 95.5 bits (236), Expect = 1.780e-19 Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 3
Query: 882 VLSLGISRDDRFVMVNVRPFVNGALEKLHQPDQRN-------------TVPDISNEIELQVWDVATKKLLFKLGGHHAFTTKDCPFLIFTAQSMADPFGDYVCSGSEEHRVFVWHLRHRLLLGALKGHTDVVNSVSWN 1256
VLS + +++N RP+ +G+ P R+ PD+S +EL + D + + + GH AFTTK+ PFLIFT + AD D++ SG E+HRV+VWH RHR L+ L GHT+ VN+VSWN
Sbjct: 11 VLSAKWNTRGDLILLNTRPYAHGSQPPQASPMSRSGGSNASFEDLLLRPAPDLSTSMELLLLDARSLETVGVFDGHFAFTTKESPFLIFTDE-WADT--DFLASGGEDHRVYVWHRRHRRLVRRLCGHTEPVNAVSWN 145 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs757.4.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs757.4.1 >prot_H-canaliculatus_M_contigs757.4.1 ID=prot_H-canaliculatus_M_contigs757.4.1|Name=mRNA_H-canaliculatus_M_contigs757.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=248bp MEVDEAVDDVAGWGCLGADIPLYPSIREDEAWPPVIVPPVGGGGGGGGGEback to top mRNA from alignment at H-canaliculatus_M_contigs757:6850..11050- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs757.4.1 ID=mRNA_H-canaliculatus_M_contigs757.4.1|Name=mRNA_H-canaliculatus_M_contigs757.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs757:6850..11050- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs757:6850..11050- >mRNA_H-canaliculatus_M_contigs757.4.1 ID=mRNA_H-canaliculatus_M_contigs757.4.1|Name=mRNA_H-canaliculatus_M_contigs757.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs757:6850..11050- (Hapterophycus canaliculatus Oshoro7m male)back to top |