mRNA_H-canaliculatus_M_contigs75657.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75657.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75657.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Dihydrolipoamide (dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL48_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.230e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKV 102
            KAAEEGYELGKASGSFKANSKALAEGAGDGIAKV
Sbjct:  445 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKV 478
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.990e-6
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    4 AAEEGYELGKASGSFKANSKALAEGAGDGIAKV 102
            A E+GYE GKA+GSFKANSKALAE  GDGIAKV
Sbjct:  426 AKEKGYEYGKATGSFKANSKALAENEGDGIAKV 458
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UTE7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.600e-6
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKV 102
            KA EEG+ELGK+ GSF+ANSKALAEG G+G+AKV
Sbjct:  197 KAQEEGWELGKSQGSFRANSKALAEGEGNGMAKV 230
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNT8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.820e-6
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKVTPRSNCQ 123
            +A EEG+ELGK+ GSFKANSKALAE  GDGIAKV  R + +
Sbjct:  416 RAKEEGFELGKSKGSFKANSKALAELEGDGIAKVLFRKDTE 456
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFC1_VITBC)

HSP 1 Score: 50.1 bits (118), Expect = 6.820e-6
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKVTPRSNCQ 123
            KA  EG+ELGK++G F+ANSKALAEG GDGIAKV  R + +
Sbjct:  395 KAKAEGFELGKSTGHFRANSKALAEGEGDGIAKVLFRKDTE 435
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Dihydrolipoyl (dehydrogenase 2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3N3_9FLOR)

HSP 1 Score: 49.7 bits (117), Expect = 9.330e-6
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKV 102
            KA+ EG+ELGK+ G F+ANSKALAEG GDGIAKV
Sbjct:  428 KASNEGFELGKSVGHFRANSKALAEGEGDGIAKV 461
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Dihydrolipoamide (dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH5_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.750e-5
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    4 AAEEGYELGKASGSFKANSKALAEGAGDGIAKV 102
            AA +GYELGK+ G F+ANSKALAEG GDGIAKV
Sbjct:  427 AAAKGYELGKSVGHFRANSKALAEGEGDGIAKV 459
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Uncharacterized (protein DLD1 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8N6_AURAN)

HSP 1 Score: 48.5 bits (114), Expect = 2.390e-5
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKV 102
            +A  EG+ELGKA G F+ANSKALAEG GDGIAKV
Sbjct:  383 RAEAEGFELGKAVGHFRANSKALAEGEGDGIAKV 416
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Dihydrolipoyl (dehydrogenase 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSA2_PORPP)

HSP 1 Score: 48.1 bits (113), Expect = 3.270e-5
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKV 102
            +A ++G+ELGK++G F+ANSKALAEG GDGIAKV
Sbjct:  445 RAEKQGFELGKSTGHFRANSKALAEGEGDGIAKV 478
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BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Match: Lipoamide (dehydrogenase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9G3_PHATC)

HSP 1 Score: 48.1 bits (113), Expect = 3.270e-5
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 KAAEEGYELGKASGSFKANSKALAEGAGDGIAKV 102
            KAA+EG+ LGK+ GSF+ANSKALAEG G+G+AKV
Sbjct:  444 KAAKEGWTLGKSQGSFRANSKALAEGEGNGMAKV 477
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75657.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Dihydrolipoamide2.230e-10100.00dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
Hypothetical4.990e-681.82protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical6.600e-676.47protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Hypothetical6.820e-668.29protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Uncharacterized6.820e-665.85protein n=2 Tax=Vitrella brassicaformis TaxID=1169... [more]
Dihydrolipoyl9.330e-676.47dehydrogenase 2, chloroplastic n=1 Tax=Gracilariop... [more]
Dihydrolipoamide1.750e-578.79dehydrogenase n=1 Tax=Tribonema minus TaxID=303371... [more]
Uncharacterized2.390e-576.47protein DLD1 n=1 Tax=Aureococcus anophagefferens T... [more]
Dihydrolipoyl3.270e-570.59dehydrogenase 1, chloroplastic n=1 Tax=Porphyridiu... [more]
Lipoamide3.270e-573.53dehydrogenase n=2 Tax=Phaeodactylum tricornutum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75657contigH-canaliculatus_M_contigs75657:135..257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LL48
Preferred nameDLD2
PFAMsPyr_redox_2,Pyr_redox_dim
Model size123
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00022,RC00583,RC02742,RC02833,RC02834
KEGG koko:K00382
KEGG ReactionR00209,R01221,R01698,R03815,R07618,R08549
KEGG Pathwayko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00036,M00307,M00532
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046483,GO:0046685,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue3.66e-11
EggNOG OGsCOG1249@1|root,KOG1335@2759|Eukaryota
EC1.8.1.4
Descriptiondihydrolipoyl dehydrogenase activity
Cds size123
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.4349327-CDS-H-canaliculatus_M_contigs75657:134..2571696854093.4349327-CDS-H-canaliculatus_M_contigs75657:134..257Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75657 135..257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75657.1.1prot_H-canaliculatus_M_contigs75657.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75657 135..257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75657.1.1

>prot_H-canaliculatus_M_contigs75657.1.1 ID=prot_H-canaliculatus_M_contigs75657.1.1|Name=mRNA_H-canaliculatus_M_contigs75657.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=41bp
KAAEEGYELGKASGSFKANSKALAEGAGDGIAKVTPRSNCQ
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mRNA from alignment at H-canaliculatus_M_contigs75657:135..257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75657.1.1 ID=mRNA_H-canaliculatus_M_contigs75657.1.1|Name=mRNA_H-canaliculatus_M_contigs75657.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75657:135..257- (Hapterophycus canaliculatus Oshoro7m male)
AAGGCGGCGGAAGAGGGATACGAACTGGGGAAGGCTTCCGGGAGCTTTAA
GGCAAACTCGAAGGCTCTCGCGGAGGGAGCAGGGGATGGCATCGCAAAGG
TGACACCTCGCTCAAATTGTCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75657:135..257-

>mRNA_H-canaliculatus_M_contigs75657.1.1 ID=mRNA_H-canaliculatus_M_contigs75657.1.1|Name=mRNA_H-canaliculatus_M_contigs75657.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75657:135..257- (Hapterophycus canaliculatus Oshoro7m male)
AAGGCGGCGGAAGAGGGATACGAACTGGGGAAGGCTTCCGGGAGCTTTAA
GGCAAACTCGAAGGCTCTCGCGGAGGGAGCAGGGGATGGCATCGCAAAGG
TGACACCTCGCTCAAATTGTCAA
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