mRNA_H-canaliculatus_M_contigs7565.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7565.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7565.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7565.1.1 vs.
Match: PDCD2_C (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.750e-18
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:   14 ESAKMPRPSAEERERLRTLGMDWGVVAVWSCPRSCENSYEECVVVQLPV 160
            E+  MP PS EERERLRTLGMDWGVVA+WSCPRSC  S EECVVVQLPV
Sbjct:  484 ETTMMPTPSVEERERLRTLGMDWGVVAIWSCPRSCSISCEECVVVQLPV 532
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7565.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PDCD2_C6.750e-1881.63domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7565contigH-canaliculatus_M_contigs7565:4432..4778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNZ1
PFAMsPDCD2_C
Model size347
Max annot lvl2759|Eukaryota
KEGG koko:K14801
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Exons1
Evalue5.04e-20
EggNOG OGsKOG2061@1|root,KOG2061@2759|Eukaryota
Descriptionpositive regulation of hematopoietic stem cell proliferation
Cds size138
COG categoryO
BRITEko00000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.3515224-UTR-H-canaliculatus_M_contigs7565:4431..46151696854093.3515224-UTR-H-canaliculatus_M_contigs7565:4431..4615Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7565 4432..4615 -
1696854093.3886056-UTR-H-canaliculatus_M_contigs7565:4753..47781696854093.3886056-UTR-H-canaliculatus_M_contigs7565:4753..4778Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7565 4754..4778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.3667486-CDS-H-canaliculatus_M_contigs7565:4615..47531696854093.3667486-CDS-H-canaliculatus_M_contigs7565:4615..4753Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7565 4616..4753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7565.1.1prot_H-canaliculatus_M_contigs7565.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7565 4616..4753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7565.1.1

>prot_H-canaliculatus_M_contigs7565.1.1 ID=prot_H-canaliculatus_M_contigs7565.1.1|Name=mRNA_H-canaliculatus_M_contigs7565.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=46bp
MPRPSAEERERLRTLGMDWGVVAVWSCPRSCENSYEECVVVQLPV*
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mRNA from alignment at H-canaliculatus_M_contigs7565:4432..4778-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7565.1.1 ID=mRNA_H-canaliculatus_M_contigs7565.1.1|Name=mRNA_H-canaliculatus_M_contigs7565.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=347bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7565:4432..4778- (Hapterophycus canaliculatus Oshoro7m male)
GGAAGAAAAAGATGAAAGCGCGAAGATGCCCAGACCAAGCGCCGAGGAGC
GCGAGCGGTTGCGGACGTTAGGAATGGACTGGGGGGTAGTGGCGGTATGG
TCGTGCCCGAGGAGCTGCGAAAATAGCTACGAAGAGTGCGTGGTTGTGCA
GCTGCCTGTGTGACTCAACTGCTGGATACGTGCCGCTTGCAGGGGTCCCG
TCTACAGCTGGCGCTATCGGCCATGCCCGTAGCTAGCCCGGAGATTATTT
TTGGTGAGGTTTGTCCCGAAGGCGGGGTTCCGGGACAAGCTACGCGAAAG
ATCAATGATATCCTAATTACGAGTAATTCCGCACGGAGAGGTATACG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7565:4432..4778-

>mRNA_H-canaliculatus_M_contigs7565.1.1 ID=mRNA_H-canaliculatus_M_contigs7565.1.1|Name=mRNA_H-canaliculatus_M_contigs7565.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=138bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7565:4432..4778- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCCAGACCAAGCGCCGAGGAGCGCGAGCGGTTGCGGACGTTAGGAAT
GGACTGGGGGGTAGTGGCGGTATGGTCGTGCCCGAGGAGCTGCGAAAATA
GCTACGAAGAGTGCGTGGTTGTGCAGCTGCCTGTGTGA
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