mRNA_H-canaliculatus_M_contigs75593.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75593.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75593.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75593.1.1 vs.
Match: Lipid_desat (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.850e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GRPASPWTITHRPFENNVHKVTYAALPLLALLRLADPG 114
            G   SPWTIT+RPFENNVHK+ YA LPLLALLRL +PG
Sbjct:   74 GHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPG 111
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75593.1.1 vs.
Match: Lipid_desat (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.630e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GRPASPWTITHRPFENNVHKVTYAALPLLALLRLADPG 114
            G   SPWTIT+RPFENNVHK+ YA LPLLALLRL +PG
Sbjct:  239 GHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPG 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75593.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Lipid_desat1.850e-1276.32domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Lipid_desat4.630e-1276.32domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75593contigH-canaliculatus_M_contigs75593:97..213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5G4
Preferred nameTMEM189
PFAMsTMEM189_B_dmain,UQ_con
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K10704,ko:K20417,ko:K20656
KEGG Pathwayko04624,map04624
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016567,GO:0016705,GO:0016740,GO:0019538,GO:0019637,GO:0019752,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031371,GO:0031625,GO:0031967,GO:0031969,GO:0031975,GO:0032446,GO:0032787,GO:0032991,GO:0033554,GO:0033559,GO:0034976,GO:0035370,GO:0036211,GO:0036503,GO:0042170,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046471,GO:0046486,GO:0050896,GO:0051603,GO:0051716,GO:0052637,GO:0055114,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0072330,GO:0080132,GO:0080167,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1902494,GO:1990234
Exons1
Evalue3.03e-13
EggNOG OGsKOG3011@1|root,KOG3011@2759|Eukaryota
EC1.14.19.43
Descriptionprotein ubiquitination
Cds size117
COG categoryM
BRITEko00000,ko00001,ko01000,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.120515-CDS-H-canaliculatus_M_contigs75593:96..2131696854093.120515-CDS-H-canaliculatus_M_contigs75593:96..213Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75593 97..213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75593.1.1prot_H-canaliculatus_M_contigs75593.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75593 97..213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75593.1.1

>prot_H-canaliculatus_M_contigs75593.1.1 ID=prot_H-canaliculatus_M_contigs75593.1.1|Name=mRNA_H-canaliculatus_M_contigs75593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=39bp
GRPASPWTITHRPFENNVHKVTYAALPLLALLRLADPGL
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mRNA from alignment at H-canaliculatus_M_contigs75593:97..213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75593.1.1 ID=mRNA_H-canaliculatus_M_contigs75593.1.1|Name=mRNA_H-canaliculatus_M_contigs75593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75593:97..213+ (Hapterophycus canaliculatus Oshoro7m male)
GGACGGCCAGCGTCACCGTGGACGATAACCCACCGCCCGTTCGAGAACAA
CGTGCACAAGGTGACCTACGCTGCGCTCCCCTTGCTCGCGTTGCTTCGGC
TGGCCGACCCTGGGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75593:97..213+

>mRNA_H-canaliculatus_M_contigs75593.1.1 ID=mRNA_H-canaliculatus_M_contigs75593.1.1|Name=mRNA_H-canaliculatus_M_contigs75593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75593:97..213+ (Hapterophycus canaliculatus Oshoro7m male)
GGACGGCCAGCGTCACCGTGGACGATAACCCACCGCCCGTTCGAGAACAA
CGTGCACAAGGTGACCTACGCTGCGCTCCCCTTGCTCGCGTTGCTTCGGC
TGGCCGACCCTGGGCTG
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