mRNA_H-canaliculatus_M_contigs75568.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75568.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75568.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75568.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gammaproteobacteria bacterium CG12_big_fil_rev_8_21_14_0_65_46_12 TaxID=1974024 RepID=A0A2H0I8A6_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.920e-6
Identity = 34/110 (30.91%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:   97 CTWTDEAS--STYQIIASNADAIGTFNLVNSTASLLPFSIFWQDDFNASAWNQLQPDVASTEIYLFDTAEQCSGGANTAMKIEVLKLDF--DNVAAGIYSGTIVLTLLPQ 414
            C +T+  S  S Y++ A  A + G ++L +S A+ LP+S+ W D    S   +L       + +      QC GG N  +++E+ + DF   +V AG Y G++ LT++P+
Sbjct:   52 CVYTNAPSQESQYEVEACGAGSGGDYDLQDSHANKLPYSVSWSD---GSKSRKLSCGKF-IKSFALSALPQCGGGNNVTLELEIKQNDFKLSSVVAGSYGGSLFLTVMPR 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75568.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.920e-630.91protein n=1 Tax=Gammaproteobacteria bacterium CG12... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75568contigH-canaliculatus_M_contigs75568:66..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.025284-CDS-H-canaliculatus_M_contigs75568:65..4821696854093.025284-CDS-H-canaliculatus_M_contigs75568:65..482Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75568 66..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75568.1.1prot_H-canaliculatus_M_contigs75568.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75568 66..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75568.1.1

>prot_H-canaliculatus_M_contigs75568.1.1 ID=prot_H-canaliculatus_M_contigs75568.1.1|Name=mRNA_H-canaliculatus_M_contigs75568.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=139bp
TSAHCVDISIEDNLYMGAWSIFATSYEVSAPVCTWTDEASSTYQIIASNA
DAIGTFNLVNSTASLLPFSIFWQDDFNASAWNQLQPDVASTEIYLFDTAE
QCSGGANTAMKIEVLKLDFDNVAAGIYSGTIVLTLLPQ*
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mRNA from alignment at H-canaliculatus_M_contigs75568:66..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75568.1.1 ID=mRNA_H-canaliculatus_M_contigs75568.1.1|Name=mRNA_H-canaliculatus_M_contigs75568.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=417bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75568:66..482- (Hapterophycus canaliculatus Oshoro7m male)
ACATCAGCACACTGCGTGGATATTAGCATCGAAGATAATTTGTACATGGG
TGCATGGTCAATTTTTGCAACCTCTTATGAAGTGAGCGCACCTGTTTGTA
CATGGACCGACGAGGCAAGCAGCACGTACCAGATCATTGCTTCAAACGCC
GATGCTATTGGTACTTTCAATCTGGTAAATTCAACAGCCAGTCTTTTACC
ATTTAGTATATTCTGGCAAGATGATTTTAACGCCTCAGCATGGAATCAAT
TACAACCTGACGTTGCATCCACGGAAATCTACCTGTTTGATACAGCAGAG
CAATGCAGTGGCGGAGCTAACACAGCCATGAAGATAGAAGTTCTGAAACT
GGACTTCGACAATGTCGCTGCCGGCATCTACTCCGGCACTATCGTATTAA
CGCTTTTACCGCAATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75568:66..482-

>mRNA_H-canaliculatus_M_contigs75568.1.1 ID=mRNA_H-canaliculatus_M_contigs75568.1.1|Name=mRNA_H-canaliculatus_M_contigs75568.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=417bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75568:66..482- (Hapterophycus canaliculatus Oshoro7m male)
ACATCAGCACACTGCGTGGATATTAGCATCGAAGATAATTTGTACATGGG
TGCATGGTCAATTTTTGCAACCTCTTATGAAGTGAGCGCACCTGTTTGTA
CATGGACCGACGAGGCAAGCAGCACGTACCAGATCATTGCTTCAAACGCC
GATGCTATTGGTACTTTCAATCTGGTAAATTCAACAGCCAGTCTTTTACC
ATTTAGTATATTCTGGCAAGATGATTTTAACGCCTCAGCATGGAATCAAT
TACAACCTGACGTTGCATCCACGGAAATCTACCTGTTTGATACAGCAGAG
CAATGCAGTGGCGGAGCTAACACAGCCATGAAGATAGAAGTTCTGAAACT
GGACTTCGACAATGTCGCTGCCGGCATCTACTCCGGCACTATCGTATTAA
CGCTTTTACCGCAATAA
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