mRNA_H-canaliculatus_M_contigs75563.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75563.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75563.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: Sugar (ABC transporter substrate-binding protein n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2FCX4_9RHOB)

HSP 1 Score: 306 bits (785), Expect = 4.300e-102
Identity = 150/179 (83.80%), Postives = 168/179 (93.85%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLT+WENVDDGLLS+ G SAT+L+E+QVDG+GFIFVPYAGRIRA+GNTP+AIRRIIT KLA+QTPDPQVQVRR+AGDGSTVSL+GSIGGQGVF IERPTRTLSTMLA AGG+TI P+IAQVTV+RGKE GKIWFQDLYDHPELDIALRAGDRILVE DTR+FTALGATG Q+ VP+ +Q
Sbjct:   73 GLTIWENVDDGLLSNEGASATLLDEIQVDGSGFIFVPYAGRIRASGNTPEAIRRIITTKLAEQTPDPQVQVRRIAGDGSTVSLIGSIGGQGVFPIERPTRTLSTMLANAGGVTIAPDIAQVTVLRGKESGKIWFQDLYDHPELDIALRAGDRILVEGDTRSFTALGATGSQSLVPFETQ 251          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: Polysaccharide (biosynthesis/export protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A221K2V6_9RHOB)

HSP 1 Score: 306 bits (784), Expect = 1.050e-101
Identity = 154/179 (86.03%), Postives = 166/179 (92.74%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLT+WENVDDGLL+    +AT LEEVQVDGAGFIFVPYAGRIRAAGN+P+AIRRIITAKL +QTPDPQVQVRRVAGDGSTVSL+GSIGGQGV+AIERPTRTL  MLARAGG+TI+PEIAQVTV RG +RGKIW QDLYDHPELDIALR GDRILVEEDTRAFTALGATGGQARVP+ SQ
Sbjct:   90 GLTIWENVDDGLLAGEMQNATQLEEVQVDGAGFIFVPYAGRIRAAGNSPEAIRRIITAKLEEQTPDPQVQVRRVAGDGSTVSLIGSIGGQGVYAIERPTRTLGAMLARAGGVTIEPEIAQVTVTRGGQRGKIWLQDLYDHPELDIALRGGDRILVEEDTRAFTALGATGGQARVPFESQ 268          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: Polysaccharide (export outer membrane protein n=8 Tax=Sulfitobacter TaxID=60136 RepID=A0A7Z0CHN9_9RHOB)

HSP 1 Score: 303 bits (777), Expect = 1.210e-100
Identity = 151/179 (84.36%), Postives = 167/179 (93.30%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            G+TV+ENVDD LL   G+ ATILEEVQVDGAGFIF+PYAGRI+AAGNTPDAIRRIIT KL +QTPDPQV+VRR AGDGSTVSL+GSIGGQGV+ IERPTRTL TMLARAGG+TI+P IAQVTVIRGK+RGKIWF+DLYDHPELDIALRAGDRILVEEDTR+FTALGATGGQA+VP+ SQ
Sbjct:   90 GITVYENVDDPLLGVEGSPATILEEVQVDGAGFIFIPYAGRIKAAGNTPDAIRRIITNKLGEQTPDPQVEVRRAAGDGSTVSLIGSIGGQGVYPIERPTRTLGTMLARAGGVTIEPAIAQVTVIRGKQRGKIWFEDLYDHPELDIALRAGDRILVEEDTRSFTALGATGGQAQVPFESQ 268          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: Sugar (ABC transporter substrate-binding protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A350AHS3_9RHOB)

HSP 1 Score: 302 bits (773), Expect = 3.130e-100
Identity = 145/179 (81.01%), Postives = 166/179 (92.74%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLT+WENVDDGLL+  G ++T+LEEVQVDGAGFIFVPYAGR+RAAGNTPDA+RR+ITAKL DQTPDPQVQVRR+AGDGSTVSLVGS+GGQGV+AIERPTRTLSTMLARAGG+TI PEIAQ+TVIRG  R K+WF+DLY HPE+DIALR GDRILVEED+RA+TALGATG Q R+P+ +Q
Sbjct:   73 GLTIWENVDDGLLASQGLNSTVLEEVQVDGAGFIFVPYAGRVRAAGNTPDALRRVITAKLEDQTPDPQVQVRRLAGDGSTVSLVGSVGGQGVYAIERPTRTLSTMLARAGGVTISPEIAQITVIRGDHRAKVWFEDLYRHPEMDIALRGGDRILVEEDSRAYTALGATGTQNRIPFETQ 251          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: polysaccharide (biosynthesis/export family protein n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C386A79)

HSP 1 Score: 301 bits (771), Expect = 1.300e-99
Identity = 148/179 (82.68%), Postives = 168/179 (93.85%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLT+WENVDDGLL+    +ATILEEVQVDG+GFIFVPYAGRI+A+GNTP+AIRRIIT+KLADQTPDPQV+VRRVAGDGSTVSLVG++GGQGV+AIERPTRTLS+MLARAGGITI+PEIAQVT++RG + GKIWFQDLY HPE DIALR GDRILVEED+RAFTALGATG QARVP+ +Q
Sbjct:   90 GLTIWENVDDGLLATDTANATILEEVQVDGSGFIFVPYAGRIKASGNTPEAIRRIITSKLADQTPDPQVEVRRVAGDGSTVSLVGAVGGQGVYAIERPTRTLSSMLARAGGITIEPEIAQVTILRGHKTGKIWFQDLYQHPEFDIALRGGDRILVEEDSRAFTALGATGTQARVPFETQ 268          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: polysaccharide (export protein n=1 Tax=Tateyamaria sp. Alg231-49 TaxID=1922219 RepID=UPI001900175C)

HSP 1 Score: 299 bits (766), Expect = 1.900e-99
Identity = 148/179 (82.68%), Postives = 164/179 (91.62%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLT+WENVD+GLL   G +AT LEEVQVDG+GFIFVPYAGRIRAAGNTP+AIRRIIT KL +QTPDPQVQVRR+AGDGSTVSL G++G QGV+AIERPTRTLSTMLARAGG+TI PEIAQ+TVIRG +R +IWFQDL+DHPE DIALR GDRILVEEDTRAFTALGATGGQARVP+ SQ
Sbjct:   90 GLTIWENVDEGLLVGQGQNATALEEVQVDGSGFIFVPYAGRIRAAGNTPEAIRRIITTKLEEQTPDPQVQVRRLAGDGSTVSLTGAVGAQGVYAIERPTRTLSTMLARAGGVTIVPEIAQITVIRGNQRSRIWFQDLFDHPERDIALRGGDRILVEEDTRAFTALGATGGQARVPFFSQ 268          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: polysaccharide (biosynthesis/export family protein n=2 Tax=unclassified Sulfitobacter TaxID=196795 RepID=UPI0015949A23)

HSP 1 Score: 300 bits (767), Expect = 4.090e-99
Identity = 145/179 (81.01%), Postives = 168/179 (93.85%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLT+WENVDDGLL++  T+AT LEEVQVDGAGFIFVPYAGRIRAAGN+P+AIRRIIT +L++QTPDPQVQVRRVAGDG+TVSL+GS+G QGV+AIERPTRTLSTMLARAGG++I PEIAQ+TV+RG ERG+IWF+DLYDHPELDIALR GDRILVEEDTR+FTA+GATG Q +VP+ SQ
Sbjct:   90 GLTIWENVDDGLLANEATNATQLEEVQVDGAGFIFVPYAGRIRAAGNSPEAIRRIITERLSEQTPDPQVQVRRVAGDGATVSLIGSVGSQGVYAIERPTRTLSTMLARAGGVSITPEIAQITVLRGTERGQIWFEDLYDHPELDIALRGGDRILVEEDTRSFTAMGATGSQQKVPFESQ 268          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: polysaccharide (biosynthesis/export family protein n=1 Tax=Puniceibacterium confluentis TaxID=1958944 RepID=UPI0011B63060)

HSP 1 Score: 300 bits (767), Expect = 4.490e-99
Identity = 148/179 (82.68%), Postives = 167/179 (93.30%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLT+WENVDDGLL+   +++TILEEVQVDG+GFIFVPYAGRIRAAGN+PDAIRR+IT +LADQTPDPQVQVRR+AGDGSTVSLVGS+GGQGV+AIERPTRTLS MLARAGG+TIQPEIAQVTV+RG ++GKIWFQDLY +P +DI LR GDRILVEEDTRAFTALGATG QARVP+ SQ
Sbjct:   90 GLTIWENVDDGLLAGETSNSTILEEVQVDGSGFIFVPYAGRIRAAGNSPDAIRRVITERLADQTPDPQVQVRRLAGDGSTVSLVGSVGGQGVYAIERPTRTLSAMLARAGGVTIQPEIAQVTVLRGGQQGKIWFQDLYKNPRMDIPLRGGDRILVEEDTRAFTALGATGTQARVPFESQ 268          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: Sugar (ABC transporter substrate-binding protein n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A073JGB6_9RHOB)

HSP 1 Score: 299 bits (766), Expect = 5.610e-99
Identity = 147/179 (82.12%), Postives = 165/179 (92.18%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLT++ENVDD LL   G+ AT LEEVQVDG+GFIF+PYAGRI+A+GNTP+AIRRIIT KLADQTPDPQV+VRRVAGDGSTVSL+G++GGQGV+AIERPTRTL  MLARAGG+T+ PEIAQ+TVIRG  RGKIW QDLYDHPELDIALRAGDRIL+EEDTRAFTALGATGGQARVP+ SQ
Sbjct:   90 GLTIYENVDDPLLGVEGSPATQLEEVQVDGSGFIFIPYAGRIKASGNTPEAIRRIITGKLADQTPDPQVEVRRVAGDGSTVSLIGAVGGQGVYAIERPTRTLGAMLARAGGVTVAPEIAQITVIRGATRGKIWLQDLYDHPELDIALRAGDRILIEEDTRAFTALGATGGQARVPFESQ 268          
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Match: Polysaccharide (export protein n=1 Tax=Sulfitobacter sabulilitoris TaxID=2562655 RepID=A0A5S3PMQ5_9RHOB)

HSP 1 Score: 298 bits (764), Expect = 7.480e-99
Identity = 149/179 (83.24%), Postives = 165/179 (92.18%), Query Frame = 1
Query:    1 GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPDAIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTRTLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAGDRILVEEDTRAFTALGATGGQARVPYASQ 537
            GLTVWENVDDGLL+    ++TILEEVQVDGAGFIFVPYAGRIRAAGNTP+AIRRIITAKL +QTPDPQVQVRRVAGDG+TVSL+GSIGGQGV+ IERPTRTL+TMLA+AGG+TI+PEIAQVTV R  E   IWFQDLYDHPELDIALRAGDRILVEEDTR+FT+LGATG Q+RVP+ SQ
Sbjct:   77 GLTVWENVDDGLLAGEAQNSTILEEVQVDGAGFIFVPYAGRIRAAGNTPEAIRRIITAKLEEQTPDPQVQVRRVAGDGATVSLIGSIGGQGVYPIERPTRTLATMLAQAGGVTIEPEIAQVTVTRAGESSTIWFQDLYDHPELDIALRAGDRILVEEDTRSFTSLGATGSQSRVPFESQ 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75563.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Sugar4.300e-10283.80ABC transporter substrate-binding protein n=1 Tax=... [more]
Polysaccharide1.050e-10186.03biosynthesis/export protein n=2 Tax=Rhodobacterale... [more]
Polysaccharide1.210e-10084.36export outer membrane protein n=8 Tax=Sulfitobacte... [more]
Sugar3.130e-10081.01ABC transporter substrate-binding protein n=1 Tax=... [more]
polysaccharide1.300e-9982.68biosynthesis/export family protein n=1 Tax=Thalass... [more]
polysaccharide1.900e-9982.68export protein n=1 Tax=Tateyamaria sp. Alg231-49 T... [more]
polysaccharide4.090e-9981.01biosynthesis/export family protein n=2 Tax=unclass... [more]
polysaccharide4.490e-9982.68biosynthesis/export family protein n=1 Tax=Punicei... [more]
Sugar5.610e-9982.12ABC transporter substrate-binding protein n=7 Tax=... [more]
Polysaccharide7.480e-9983.24export protein n=1 Tax=Sulfitobacter sabulilitoris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75563contigH-canaliculatus_M_contigs75563:2..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1342299.Z947_2136
PFAMsPoly_export,SLBB
Model size537
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01991
KEGG TC1.B.18
KEGG Pathwayko02026,map02026
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.98e-101
EggNOG OGsCOG1596@1|root,COG1596@2|Bacteria,1N7GP@1224|Proteobacteria,2TS5Q@28211|Alphaproteobacteria,3ZWWH@60136|Sulfitobacter
DescriptionPolysaccharide biosynthesis/export protein
Cds size537
COG categoryM
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.960849-CDS-H-canaliculatus_M_contigs75563:1..5381696854092.960849-CDS-H-canaliculatus_M_contigs75563:1..538Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75563 2..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75563.1.1prot_H-canaliculatus_M_contigs75563.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75563 2..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75563.1.1

>prot_H-canaliculatus_M_contigs75563.1.1 ID=prot_H-canaliculatus_M_contigs75563.1.1|Name=mRNA_H-canaliculatus_M_contigs75563.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=179bp
GLTVWENVDDGLLSDTGTSATILEEVQVDGAGFIFVPYAGRIRAAGNTPD
AIRRIITAKLADQTPDPQVQVRRVAGDGSTVSLVGSIGGQGVFAIERPTR
TLSTMLARAGGITIQPEIAQVTVIRGKERGKIWFQDLYDHPELDIALRAG
DRILVEEDTRAFTALGATGGQARVPYASQ
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mRNA from alignment at H-canaliculatus_M_contigs75563:2..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75563.1.1 ID=mRNA_H-canaliculatus_M_contigs75563.1.1|Name=mRNA_H-canaliculatus_M_contigs75563.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=537bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75563:2..538+ (Hapterophycus canaliculatus Oshoro7m male)
GGCTTGACGGTCTGGGAAAACGTCGACGACGGTTTGCTGTCGGACACAGG CACAAGTGCGACGATCCTCGAAGAGGTTCAGGTCGACGGCGCGGGCTTTA TCTTTGTCCCTTACGCCGGTCGCATTCGCGCAGCAGGCAACACGCCAGAC GCCATTCGCCGCATCATCACCGCCAAACTGGCCGACCAAACCCCTGATCC ACAGGTGCAAGTGCGCCGGGTTGCAGGTGACGGTTCGACCGTTTCATTGG TTGGCTCCATCGGTGGCCAAGGCGTGTTCGCGATTGAACGACCCACGCGC ACCCTGTCCACGATGCTGGCACGCGCAGGCGGCATCACGATCCAGCCAGA AATCGCGCAAGTCACTGTTATTCGTGGTAAAGAGCGTGGGAAAATCTGGT TCCAGGACCTGTATGACCACCCAGAATTGGACATCGCATTGCGCGCTGGC GACCGCATTTTGGTCGAGGAAGACACCCGTGCCTTCACCGCATTGGGCGC AACCGGCGGCCAAGCCCGCGTCCCCTACGCAAGCCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75563:2..538+

>mRNA_H-canaliculatus_M_contigs75563.1.1 ID=mRNA_H-canaliculatus_M_contigs75563.1.1|Name=mRNA_H-canaliculatus_M_contigs75563.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=537bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75563:2..538+ (Hapterophycus canaliculatus Oshoro7m male)
GGCTTGACGGTCTGGGAAAACGTCGACGACGGTTTGCTGTCGGACACAGG
CACAAGTGCGACGATCCTCGAAGAGGTTCAGGTCGACGGCGCGGGCTTTA
TCTTTGTCCCTTACGCCGGTCGCATTCGCGCAGCAGGCAACACGCCAGAC
GCCATTCGCCGCATCATCACCGCCAAACTGGCCGACCAAACCCCTGATCC
ACAGGTGCAAGTGCGCCGGGTTGCAGGTGACGGTTCGACCGTTTCATTGG
TTGGCTCCATCGGTGGCCAAGGCGTGTTCGCGATTGAACGACCCACGCGC
ACCCTGTCCACGATGCTGGCACGCGCAGGCGGCATCACGATCCAGCCAGA
AATCGCGCAAGTCACTGTTATTCGTGGTAAAGAGCGTGGGAAAATCTGGT
TCCAGGACCTGTATGACCACCCAGAATTGGACATCGCATTGCGCGCTGGC
GACCGCATTTTGGTCGAGGAAGACACCCGTGCCTTCACCGCATTGGGCGC
AACCGGCGGCCAAGCCCGCGTCCCCTACGCAAGCCAG
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