mRNA_H-canaliculatus_M_contigs75550.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75550.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75550.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: Lipid (A biosynthesis lauroyl acyltransferase n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C5ZXI9_9BACT)

HSP 1 Score: 104 bits (259), Expect = 2.420e-25
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAAAK--------QSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAKKALARAA 213
            +PMQFES MLA ADP  ++        +SV T+T+WYN QLE MIDLAPEQYWWLHRRWRTP  ++AKRLAK+  ARAA
Sbjct:  243 RPMQFESAMLAQADPRPSEHGHTDPHCESVATLTHWYNRQLEAMIDLAPEQYWWLHRRWRTPSEKVAKRLAKQTTARAA 321          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: Lipid (A biosynthesis lauroyl acyltransferase n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5XRJ6_9BACT)

HSP 1 Score: 101 bits (252), Expect = 3.200e-24
Identity = 48/73 (65.75%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 KPMQFESTMLASADP---------AAAKQSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAK 192
            +PMQFES ML   DP          AA +SV+++T+WYN QLER IDLAPEQYWWLHRRWRTPPPR+AKRL K
Sbjct:  245 RPMQFESAMLEMVDPLADDQDERSTAACESVDSLTHWYNRQLERFIDLAPEQYWWLHRRWRTPPPRVAKRLEK 317          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: KDO2-lipid (IV(A) lauroyltransferase n=3 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5E0E7_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 1.550e-23
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAAAK---------QSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAKK 195
            +PMQFES M+   DPA            +SVE++T WYN QLER IDLAPEQYWWLHRRWRTP PR+AKRLAKK
Sbjct:  245 RPMQFESAMMEMVDPAKVDANGRTAPECESVESLTRWYNLQLERTIDLAPEQYWWLHRRWRTPSPRVAKRLAKK 318          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: Lipid (A biosynthesis lauroyl acyltransferase n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6BWJ0_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 2.730e-23
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAA---------AKQSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAK 192
            +P+QFES ++   DP A         A +SVE++T+WYN QLER+ID+APEQYWWLHRRWRTPPPRIAKR AK
Sbjct:  255 RPLQFESALVEMVDPLAIDIDERSRVACESVESLTHWYNRQLERIIDIAPEQYWWLHRRWRTPPPRIAKRFAK 327          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: Lipid (A biosynthesis acyltransferase n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1WAG7_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 3.210e-23
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAAAK---QSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAKK 195
            KPMQFES +L   DPA      QSV  +T WYN QLE MIDLAPEQYWWLHRRWRTPP R+A+RLAKK
Sbjct:  247 KPMQFESGLLGVVDPATDSENGQSVGQLTEWYNGQLESMIDLAPEQYWWLHRRWRTPPERVARRLAKK 314          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: Probable (lipid A biosynthesis lauroyl acyltransferase n=7 Tax=Rhodopirellula TaxID=265488 RepID=Q7UNX8_RHOBA)

HSP 1 Score: 97.1 bits (240), Expect = 1.710e-22
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAAAK---QSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAKK 195
            KPMQFES +L   DPA      QSV  +T WYN QLE MIDLAPEQYWWLHRRWR PP ++A+RLAKK
Sbjct:  247 KPMQFESGLLGLVDPATGSENGQSVGQLTEWYNEQLESMIDLAPEQYWWLHRRWRKPPEKVARRLAKK 314          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: Lipid (A biosynthesis lauroyl acyltransferase n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1EK83_RHOIS)

HSP 1 Score: 97.1 bits (240), Expect = 1.800e-22
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAAAK---QSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAKK 195
            KPMQFES +L   DPA      QSV  MT WYN QLE MID+APEQYWWLHRRWRTPP ++A+RL KK
Sbjct:  250 KPMQFESGLLGVVDPATDSENGQSVGQMTEWYNRQLESMIDIAPEQYWWLHRRWRTPPEKVARRLEKK 317          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: lipid (A biosynthesis acyltransferase n=1 Tax=Stieleria sp. JC731 TaxID=2894195 RepID=UPI001E31D741)

HSP 1 Score: 95.9 bits (237), Expect = 3.800e-22
Identity = 48/75 (64.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAAAK----QSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAKKALARAA 213
            KPMQFES  +  ADPA       QSV+T+T WYNHQL + +  A EQYWWLHRRWR PPPRIAKRLAK   A+AA
Sbjct:  244 KPMQFESACIGVADPANDPEGHCQSVQTLTRWYNHQLAKSVGEAVEQYWWLHRRWRQPPPRIAKRLAKTQPAKAA 318          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: lysophospholipid (acyltransferase family protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E3461C7)

HSP 1 Score: 93.2 bits (230), Expect = 5.390e-21
Identity = 45/68 (66.18%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAAAK---QSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRLAKK 195
            KPMQFES +L   DP       QSV  MT WYN QLE MID+APEQYWWLHRRWRTPP ++A RL KK
Sbjct:  247 KPMQFESGLLGVVDPITDDENAQSVGQMTEWYNSQLEAMIDIAPEQYWWLHRRWRTPPEKVAARLEKK 314          
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Match: lysophospholipid (acyltransferase family protein n=1 Tax=Rhodopirellula sallentina TaxID=1263869 RepID=UPI001F3F2C3C)

HSP 1 Score: 92.0 bits (227), Expect = 1.240e-20
Identity = 44/71 (61.97%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 KPMQFESTMLASADPAAAK---------QSVETMTNWYNHQLERMIDLAPEQYWWLHRRWRTPPPRIAKRL 186
            +PMQFES M+   DPA            +SVE +T WYN QLER ID APEQYWWLHRRWRTP PR+AKRL
Sbjct:  259 RPMQFESAMMEMVDPADKDADGRTNPDCESVEALTRWYNRQLERSIDRAPEQYWWLHRRWRTPSPRVAKRL 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75550.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Lipid2.420e-2564.56A biosynthesis lauroyl acyltransferase n=1 Tax=Rho... [more]
Lipid3.200e-2465.75A biosynthesis lauroyl acyltransferase n=1 Tax=Rho... [more]
KDO2-lipid1.550e-2364.86IV(A) lauroyltransferase n=3 Tax=Rhodopirellula Ta... [more]
Lipid2.730e-2363.01A biosynthesis lauroyl acyltransferase n=1 Tax=Pla... [more]
Lipid3.210e-2370.59A biosynthesis acyltransferase n=1 Tax=Rhodopirell... [more]
Probable1.710e-2267.65lipid A biosynthesis lauroyl acyltransferase n=7 T... [more]
Lipid1.800e-2267.65A biosynthesis lauroyl acyltransferase n=1 Tax=Rho... [more]
lipid3.800e-2264.00A biosynthesis acyltransferase n=1 Tax=Stieleria s... [more]
lysophospholipid5.390e-2166.18acyltransferase family protein n=2 Tax=unclassifie... [more]
lysophospholipid1.240e-2061.97acyltransferase family protein n=1 Tax=Rhodopirell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75550contigH-canaliculatus_M_contigs75550:173..445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog595460.RRSWK_03431
PFAMsLip_A_acyltrans
Model size216
Max annot lvl203682|Planctomycetes
KEGG rclassRC00037,RC00039
KEGG koko:K02517
KEGG ReactionR05146
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00060
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.9e-23
EggNOG OGsCOG1560@1|root,COG1560@2|Bacteria,2IY7N@203682|Planctomycetes
EC2.3.1.241
DescriptionLipid A biosynthesis acyltransferase
Cds size210
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.9053535-CDS-H-canaliculatus_M_contigs75550:172..3281696854092.9053535-CDS-H-canaliculatus_M_contigs75550:172..328Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75550 173..328 -
1696854092.9217186-CDS-H-canaliculatus_M_contigs75550:385..4391696854092.9217186-CDS-H-canaliculatus_M_contigs75550:385..439Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75550 386..439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.932064-UTR-H-canaliculatus_M_contigs75550:439..4451696854092.932064-UTR-H-canaliculatus_M_contigs75550:439..445Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75550 440..445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75550.1.1prot_H-canaliculatus_M_contigs75550.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75550 173..439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75550.1.1

>prot_H-canaliculatus_M_contigs75550.1.1 ID=prot_H-canaliculatus_M_contigs75550.1.1|Name=mRNA_H-canaliculatus_M_contigs75550.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=70bp
MQFESTMLASADPAAAKQSVETMTNWYNHQLERMIDLAPEQYWWLHRRWR
TPPPRIAKRLAKKALARAA*
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mRNA from alignment at H-canaliculatus_M_contigs75550:173..445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75550.1.1 ID=mRNA_H-canaliculatus_M_contigs75550.1.1|Name=mRNA_H-canaliculatus_M_contigs75550.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=273bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75550:173..445- (Hapterophycus canaliculatus Oshoro7m male)
AAACCGATGCAATTTGAATCAACCATGCTGGCTTCGGCCGACCCCGCTGC CGCGAAACAGGTTTCGTCCGGCAGCGACGCTGCCAATCTTCACCCACTGC CTGATCCGGCGTGCGAGTCCGTTGAAACAATGACGAATTGGTACAATCAT CAACTCGAACGAATGATCGACTTAGCCCCCGAACAATACTGGTGGCTGCA CCGTCGTTGGCGGACACCGCCGCCTCGCATCGCCAAACGGTTGGCAAAGA AGGCACTGGCGAGAGCCGCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75550:173..445-

>mRNA_H-canaliculatus_M_contigs75550.1.1 ID=mRNA_H-canaliculatus_M_contigs75550.1.1|Name=mRNA_H-canaliculatus_M_contigs75550.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75550:173..445- (Hapterophycus canaliculatus Oshoro7m male)
ATGCAATTTGAATCAACCATGCTGGCTTCGGCCGACCCCGCTGCCGCGAA
ACAGTCCGTTGAAACAATGACGAATTGGTACAATCATCAACTCGAACGAA
TGATCGACTTAGCCCCCGAACAATACTGGTGGCTGCACCGTCGTTGGCGG
ACACCGCCGCCTCGCATCGCCAAACGGTTGGCAAAGAAGGCACTGGCGAG
AGCCGCTTGA
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