mRNA_H-canaliculatus_M_contigs7555.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7555.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7555.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: TOG (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV5_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 4.920e-70
Identity = 114/143 (79.72%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 EETEDEQDREGEDTDY-VARTCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADDEYSWRTHLIDSCPQNPRR 426
            EET+  Q +E E+ D  V+ TCQFCG+YDP+FTDEKLDMHYWQNCPLLMSCEECGQVIEISSI EHLLEECQNRE+YTECEIS LAIR+EDL KWQRSKSC+PPGKGGP STCPLCF+DVG ADDE  WR HLID C +NPRR
Sbjct:  715 EETDVGQTKESEEMDDDVSYTCQFCGKYDPSFTDEKLDMHYWQNCPLLMSCEECGQVIEISSIPEHLLEECQNRENYTECEISHLAIRIEDLDKWQRSKSCKPPGKGGPGSTCPLCFEDVGSADDEEYWRAHLIDRCTRNPRR 857          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: TOG (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ3_9STRA)

HSP 1 Score: 196 bits (497), Expect = 3.020e-52
Identity = 81/123 (65.85%), Postives = 101/123 (82.11%), Query Frame = 1
Query:   58 TCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADDEYSWRTHLIDSCPQNPRR 426
            TCQFCG++D  FT+E+LD+HYWQ CP+LM CEECGQVIEIS++ EHLL+ECQ    Y ECE+S +A+R E L++WQRS  CRPPG+GG  S CPLCF+D+G ADDE  WR HLI++CP+NPRR
Sbjct:  762 TCQFCGKFDAEFTEERLDLHYWQACPMLMGCEECGQVIEISALPEHLLDECQEAGKYEECEVSGMAVRREALTEWQRSAHCRPPGRGGIGSVCPLCFKDLGAADDEEVWRAHLIEACPKNPRR 884          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8I8_HETAK)

HSP 1 Score: 143 bits (361), Expect = 1.800e-38
Identity = 60/122 (49.18%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   58 TCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADDEYSWRTHLIDSCPQNPR 423
            TCQFCG  DP F +E LD+HYWQ+C +LMSC EC QVIEI+ ++EH L EC+ ++ Y EC++S   +  ++L +WQ S  CRP    G    C LC + VG  + E  WR HL   C QNPR
Sbjct:   12 TCQFCGARDPDFDEEALDLHYWQDCVMLMSCRECSQVIEIACLAEHYLTECEFKDKYIECDVSGEVVLKDELKEWQASSECRPAADDGGRPRCLLCHRGVGPPEGEEGWRRHLTRDCSQNPR 133          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVW7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.060e-32
Identity = 60/135 (44.44%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   58 TCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADD-------------EYSWRTHLIDSCPQNPR 423
            TCQFCG  D  F +  LD+HYW++CP+L+SC EC Q+IE+  ++EHLLEEC+ RE+Y +CE+S  A+R+ED + W+    C P   G     CPLC QD+   DD             + +W+ HLI+ CP N R
Sbjct:  118 TCQFCGLEDDDFDEAGLDLHYWRDCPVLLSCTECEQIIEVQGLAEHLLEECEARENYYQCEVSGEAVRIEDEAAWRDGPHCVPMAAGAL-GRCPLCHQDI--IDDPALSGMTVETDVGDAAWQEHLINECPANER 249          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: Centrosomal (protein of 104 kDa n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6MN93_9TELE)

HSP 1 Score: 129 bits (323), Expect = 5.690e-29
Identity = 57/130 (43.85%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   46 YVARTCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADDEYSWRTHLID--SCPQNPRRP 429
            ++ + C FCGE D +FTDE LD+HYW +CP+L  C+EC QV+EI+S++EHLL EC +R  + +C     A+  EDL +  +  +C PP  G   S CPLC  +    D+  +W+ HL+    C QN RRP
Sbjct:  697 HLDKLCIFCGETDESFTDEGLDLHYWTHCPMLRHCDECKQVVEIASVTEHLLSECGSRSKFRQCVRCSEAVLAEDLPRHAQGPTCNPPTSGKASSHCPLCHNNFMPGDE--AWKAHLMGRGGCKQNSRRP 824          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: (mimic (poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821MJM6_9NEOB)

HSP 1 Score: 119 bits (298), Expect = 1.260e-28
Identity = 51/129 (39.53%), Postives = 83/129 (64.34%), Query Frame = 1
Query:   46 YVARTCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADDEYSWRTHLI--DSCPQNPRR 426
            Y+   C FCGE D +FT+E LD+HYW+ CP+L  CE C QV+EI+S+++HLL EC +++ + +C++   AI  + L +  ++K+C P       + CPLC ++    ++  +W++HL+  D C  NPRR
Sbjct:   44 YLDNLCIFCGERDESFTEEGLDLHYWKQCPMLKRCEHCKQVVEIASLTDHLLTECDHKDLFGKCQLCTEAISKDHLLEHVKAKTCNPAKGEKVANRCPLCHENFTPGEE--AWKSHLMGKDGCKMNPRR 170          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: centrosomal (protein of 104 kDa isoform X1 n=2 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD3F157)

HSP 1 Score: 127 bits (320), Expect = 1.450e-28
Identity = 57/132 (43.18%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   43 DYVARTCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPP--GKGGPHSTCPLCFQDVGKADDEYSWRTHLI--DSCPQNPRR 426
            DY+   C FCG+ D +FT++ LD+HYW++CP+L  C+EC QV+EI+S++EHLL EC++R  +++C     A+  EDL++  +  +C PP  GKG  H  CPLC  +    ++  +W+THL+  + C QN RR
Sbjct:  770 DYLDNLCIFCGKKDESFTEDGLDLHYWKHCPMLKRCDECRQVVEIASLTEHLLGECESRSKFSQCPRCSEAVATEDLARHVQGPACNPPISGKGSNH--CPLCHNNFQPGEE--AWKTHLMGREGCKQNSRR 897          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: centrosomal (protein of 104 kDa-like n=1 Tax=Balearica regulorum gibbericeps TaxID=100784 RepID=UPI0005326A81)

HSP 1 Score: 125 bits (313), Expect = 1.760e-28
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 1
Query:   43 DYVARTCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADDEYSWRTHLI--DSCPQNPRR 426
            DY+   C FCGE D +FT+E LD+HYW++CP+L  C+ C QV+EI+S++EHLL +C  ++S+ +C+    AI  EDL K  +SK+C P       + CPLC  +    ++  +W++HLI  D C  N RR
Sbjct:  261 DYLDNLCIFCGERDKSFTEEGLDLHYWKHCPMLTRCQHCKQVVEIASLTEHLLTDCDKKDSFGKCQRCSEAIPKEDLPKHIKSKTCNPAKPENVANHCPLCHDNFSPGEE--AWKSHLIGNDGCKMNQRR 388          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: Centrosomal (protein 104 n=3 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3G3Y1_9LABR)

HSP 1 Score: 127 bits (319), Expect = 1.960e-28
Identity = 58/131 (44.27%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   46 YVARTCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPP--GKGGPHSTCPLCFQDVGKADDEYSWRTHLI--DSCPQNPRR 426
            Y+   C FCG+ D +FT++ LD+HYW++CP+L  C+EC QV+EI+S++EHLL EC+NR  +++C     A+  EDL++  +  +C PP  GKG  H  CPLC  +      E +W+THL+  + C QN RR
Sbjct:  768 YLDNLCIFCGKKDESFTEDGLDLHYWKHCPMLRRCDECRQVVEIASLTEHLLGECENRSKFSQCPRCSEALATEDLARHVQGPACNPPVSGKGSNH--CPLCHNNF--LPGEEAWKTHLMGREGCKQNSRR 894          
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Match: Centrosomal (protein of 104 kDa n=7 Tax=Cyprinoidei TaxID=30727 RepID=A0A3N0YIM0_ANAGA)

HSP 1 Score: 127 bits (318), Expect = 2.620e-28
Identity = 53/129 (41.09%), Postives = 87/129 (67.44%), Query Frame = 1
Query:   46 YVARTCQFCGEYDPAFTDEKLDMHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIRVEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADDEYSWRTHLI--DSCPQNPRR 426
            Y+   C FCGE D +FT+++LD+HYW++CP+L  C +C QV+EI+S++EHLL EC+ R  +T+C +   A+  ++L++  +S +C PP  G   + CP+C ++   A  E +W++HL+  + C QN RR
Sbjct:  742 YLDNLCIFCGERDVSFTEDRLDLHYWKHCPMLQRCLQCRQVVEIASLTEHLLTECERRADFTQCPLCSEALTRDNLTEHAQSTACNPPASGENCNHCPICHENF--ASGEEAWKSHLMGPEGCKQNSRR 868          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7555.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
TOG4.920e-7079.72domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
TOG3.020e-5265.85domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.800e-3849.18protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical5.060e-3244.44protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Centrosomal5.690e-2943.85protein of 104 kDa n=1 Tax=Takifugu flavidus TaxID... [more]
(mimic1.260e-2839.53poison frog) hypothetical protein n=1 Tax=Ranitome... [more]
centrosomal1.450e-2843.18protein of 104 kDa isoform X1 n=2 Tax=Cheilinus un... [more]
centrosomal1.760e-2843.08protein of 104 kDa-like n=1 Tax=Balearica reguloru... [more]
Centrosomal1.960e-2844.27protein 104 n=3 Tax=Labrus bergylta TaxID=56723 Re... [more]
Centrosomal2.620e-2841.09protein of 104 kDa n=7 Tax=Cyprinoidei TaxID=30727... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7555contigH-canaliculatus_M_contigs7555:754..2481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPV5
PFAMsUVR,XRCC1_N
Model size1102
Max annot lvl2759|Eukaryota
KEGG koko:K16458
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.65e-60
EggNOG OGsKOG4825@1|root,KOG4825@2759|Eukaryota
Descriptionthienylcyclohexylpiperidine binding
Cds size321
COG categoryM
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.8051777-UTR-H-canaliculatus_M_contigs7555:753..8641696854092.8051777-UTR-H-canaliculatus_M_contigs7555:753..864Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7555 754..864 +
1696854092.8607974-UTR-H-canaliculatus_M_contigs7555:1811..24811696854092.8607974-UTR-H-canaliculatus_M_contigs7555:1811..2481Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7555 1812..2481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.8184566-CDS-H-canaliculatus_M_contigs7555:864..9181696854092.8184566-CDS-H-canaliculatus_M_contigs7555:864..918Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7555 865..918 +
1696854092.8297846-CDS-H-canaliculatus_M_contigs7555:1236..13871696854092.8297846-CDS-H-canaliculatus_M_contigs7555:1236..1387Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7555 1237..1387 +
1696854092.84065-CDS-H-canaliculatus_M_contigs7555:1695..18111696854092.84065-CDS-H-canaliculatus_M_contigs7555:1695..1811Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7555 1696..1811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7555.1.1prot_H-canaliculatus_M_contigs7555.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7555 865..1811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7555.1.1

>prot_H-canaliculatus_M_contigs7555.1.1 ID=prot_H-canaliculatus_M_contigs7555.1.1|Name=mRNA_H-canaliculatus_M_contigs7555.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=107bp
MHYWQNCPLLMSCEECGQVIEISSISEHLLEECQNRESYTECEISRLAIR
VEDLSKWQRSKSCRPPGKGGPHSTCPLCFQDVGKADDEYSWRTHLIDSCP
QNPRRP*
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mRNA from alignment at H-canaliculatus_M_contigs7555:754..2481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7555.1.1 ID=mRNA_H-canaliculatus_M_contigs7555.1.1|Name=mRNA_H-canaliculatus_M_contigs7555.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1728bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7555:754..2481+ (Hapterophycus canaliculatus Oshoro7m male)
GAGGAGACTGAGGATGAACAGGACCGCGAGGGGGAGGATACAGACTACGT AGCTCGCACGTGTCAGTTCTGCGGCGAGTACGACCCTGCCTTTACTGACG AGAAGCTGGACATGCACTACTGGCAAAACTGTCCTCTCTTGATGAGCTGC GAAGAGTGCGGGCAGGTGCGTTCAAGAGAACACGATCTACTTTGCCGGGG GCTGCCAATGTACAAATACTTGGACGGGATACGGTGAAGCAGTACATTGT CGAATGGCCTTTTCACGACTGTGGACCATATGCATGTACATCGATGAGTA CTGATGTTCAAAAAGGCGGCATTTAGACGCTCGGAATGGGTGCATACAGG TCGGATTTCTGGCACAGGCCCGGCTGTTAAATGAAGTGTTTGAGGTGAGG TGGGTGCGTCACTCAAACGTACCCTCGTTCATTGTGCGATTGAGGGTGCG GTTGAAGCTTCAAGTGAACCTTAATCGTGACAGGTGATCGAGATATCGTC CATCTCGGAACATCTGTTGGAGGAGTGTCAGAACCGTGAGAGCTACACAG AGTGCGAAATATCTCGGCTTGCTATTCGCGTGGAGGACCTGAGTAAATGG CAGCGCTCGAAATCCTGCAGGCCTCCTGGGAAGGGTGAGCAGCTCAGCAC GAGACAATGCTAGACTACGCCATGCGTTGTACACGGCCAGGGTGGCATGT CCGTGGGCAAGATGACACGAGGAAATATCACTGAGCTGTCCCCCATTCAG CATTAGCTTGATCATCTGTAAAATGTTCTTGATGTTGAGGTCGACTGGGC AGTGTCACAAGGAGCAATGACGAACGATCCTATGGTAGAGCCACTGCGTT CCCTTCCACACGAAATAGTGCTTTTCATCTACACCGAGCGCCAAATGTTT CGGTGAGCCTCCCTCCTTCGCGATGCCTGTCCAATTTCGCAGGCGGACCG CACAGCACTTGCCCGCTTTGCTTTCAAGATGTCGGGAAAGCTGACGACGA GTACTCTTGGCGGACTCACCTCATTGACTCTTGTCCGCAAAATCCTCGGC GACCGTAATTTTTGGGCGCATATTTGGACACTATGTAAATATTGTATGCA AGCATGGTGAAGGCCGCAAGCTGTAAGACGCACTATCTGCAGGCTTCCCG GGTAGCGATTTTCATGACGTAGCTGAGTGGACGAAGTGTCTTGGGTGAGG GCTTGAAAACTAGGAGTGCTTGAGACATTTAATCGTGTCAGGTACGCGGT TTGCAGCAGAGTCCAAATAGCACCGGCTTGAATGAATTTGCGTCTGTTGG TCAGTCTGTTTGCAGATGGTTGCCTGTCCGGAGCATTGACGGGCTGTTAT AAACGCAAATTCGCAGCCAATTTCAGTCAAGAGCGTAAATGTGTTGACGC ATGTGTAATCTCCAAAACAATGAACTTGTATCTTTTAAATCCAGAAAAAA ACAGGATCTCCTGATAAATAAATATTATGAAGGCACAGCGTGATGTATTT GAATCAGAGGCAGACGAAGGATTGGACACATTCCATTCCATTACAAGACC CGTTTTGTGCCGATTGAGAACTCTTGCTCGACCCAAACCAGAAAATAATA TGTCGCCCCATCCACGAGAAAACCCGACACTAATCGAGCACTCGCGTATG ACTGCCTGACAAAAATGCCCCCGATAACAACTGAGTTCAAAAATTTTATA ACACGCGGCAAACGAAGTTGAAATCCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7555:754..2481+

>mRNA_H-canaliculatus_M_contigs7555.1.1 ID=mRNA_H-canaliculatus_M_contigs7555.1.1|Name=mRNA_H-canaliculatus_M_contigs7555.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=321bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7555:754..2481+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCACTACTGGCAAAACTGTCCTCTCTTGATGAGCTGCGAAGAGTGCGG
GCAGGTGATCGAGATATCGTCCATCTCGGAACATCTGTTGGAGGAGTGTC
AGAACCGTGAGAGCTACACAGAGTGCGAAATATCTCGGCTTGCTATTCGC
GTGGAGGACCTGAGTAAATGGCAGCGCTCGAAATCCTGCAGGCCTCCTGG
GAAGGGCGGACCGCACAGCACTTGCCCGCTTTGCTTTCAAGATGTCGGGA
AAGCTGACGACGAGTACTCTTGGCGGACTCACCTCATTGACTCTTGTCCG
CAAAATCCTCGGCGACCGTAA
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