mRNA_H-canaliculatus_M_contigs75536.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75536.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75536.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.170e-27
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   10 QSAVASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSEDCTVR 219
            +S V SVC S DGLKLAVGT+AGSI VLDVMTHGYTTALRSHRG VTA A+DP EERD+FATVSEDCT+R
Sbjct:  958 ESPVVSVCFSKDGLKLAVGTAAGSISVLDVMTHGYTTALRSHRGGVTAAAIDPSEERDDFATVSEDCTIR 1027
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLQ5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.190e-15
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   19 VASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSEDCTVR 219
            V ++  S DGL+LAVGT +GS+GVLDV+TH Y+T LRSHRGAV A+A DP   R E ATV  D TVR
Sbjct:  793 VTAIALSADGLRLAVGTDSGSLGVLDVVTHKYSTLLRSHRGAVAAIACDPC--RGEAATVGADGTVR 857
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V5D5_9CRYP)

HSP 1 Score: 63.5 bits (153), Expect = 2.720e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   19 VASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSEDCTVR 219
            VASV  S D LK+A+ T  G++GV+DV +HGY T +RSH  AV A+A+DP     EF T + D T+R
Sbjct:    8 VASVGVSSDCLKIAISTQNGTVGVMDVPSHGYRTVVRSHENAVCAMAMDP--NNREFTTTASDGTIR 72
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: DUF667 (domain-containing protein n=5 Tax=Volvox TaxID=3066 RepID=A0A8J4ESL9_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 6.960e-11
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   10 QSAVASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSEDCTVR 219
            + AV  +  S D L++A+GT  G++G L +  H Y T LRSH GAV AVAVDP   RD F TVS D T+R
Sbjct:  714 EGAVTGLALSPDALRVAIGTETGALGCLHIPDHSYMTLLRSHSGAVNAVAVDP--NRDHFCTVSTDGTLR 781
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: WD (repeat domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MFG2_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 4.520e-10
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   43 DGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSEDCTVR 219
            DGL++AVGTS G+IG LD+ +H Y T +RSH   +  VAVDP  +R +F+TVS+D +VR
Sbjct:  592 DGLQIAVGTSNGTIGYLDIPSHEYKTLIRSHSSVINDVAVDP--QRKQFSTVSDDGSVR 648
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ90_GUITC)

HSP 1 Score: 62.0 bits (149), Expect = 2.150e-9
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   37 SGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSEDCTVR 219
            S D L++A+GT+ G+IG++DV THGY T +RSH   V A+A+DP     EF T + D T+R
Sbjct:  591 SSDCLRIAIGTANGTIGIMDVPTHGYRTVVRSHESVVLALAMDP--HNREFTTTASDGTIR 649
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7G3_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 7.440e-9
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   19 VASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSEDCTVR 219
            V  V  + DGLK+A GTS GS+GVLDV  HGY+T +RSH GAV  VA   +  R  FAT  +D T+R
Sbjct:  220 VVDVAVAPDGLKIACGTSRGSLGVLDVSAHGYSTLVRSHVGAVFDVAHADVGGR--FATCGKDGTIR 284
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: DUF667 (domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DVB1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.500e-6
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   19 VASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSED 207
            VASV  S DGL   +G   G+IG+L++ T  YTT +R+H GA+TA+A+ P    D F T S D
Sbjct:  513 VASVDLSVDGLHALIGCVNGTIGMLEISTQQYTTVVRAHTGAITALALSP--RSDSFVTTSTD 573
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: DUF667 (domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A603_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.520e-6
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   19 VASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSED 207
            VASV  S DGL   +G   G+IG+L++ T  YTT +R+H GA+TA+A+ P    D F T S D
Sbjct:  626 VASVDLSVDGLHALIGCVNGTIGMLEISTQQYTTVVRAHTGAITALALSP--RSDSFVTTSTD 686
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BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Match: WD (repeat-containing 90 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U0S8_CHLSO)

HSP 1 Score: 48.9 bits (115), Expect = 8.920e-5
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:   19 VASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVTAVAVDPLEERDEFATVSEDCT 213
            V  +  S +G+++AVGT  G++G+LD+    Y T LRSH   VTAVA+   E   E       CT
Sbjct:  498 VTGIVLSPNGMRMAVGTDTGALGLLDIRAQTYVTLLRSHTAPVTAVALMGQEPGQELGQERHYCT 562
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75536.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Uncharacterized1.170e-2781.43protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
DUF6678.190e-1562.69domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical2.720e-1150.75protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID... [more]
DUF6676.960e-1151.43domain-containing protein n=5 Tax=Volvox TaxID=306... [more]
WD4.520e-1054.24repeat domain-containing protein n=1 Tax=Chloropic... [more]
DUF6672.150e-949.18domain-containing protein n=1 Tax=Guillardia theta... [more]
Uncharacterized7.440e-953.73protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
DUF6671.500e-647.62domain-containing protein (Fragment) n=1 Tax=Aphan... [more]
DUF6671.520e-647.62domain-containing protein (Fragment) n=1 Tax=Aphan... [more]
WD8.920e-540.00repeat-containing 90 n=1 Tax=Chlorella sorokiniana... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75536contigH-canaliculatus_M_contigs75536:259..495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMS4
Preferred nameWDR90
PFAMsBromodomain,DUF667,Nup160,WD40
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K11797,ko:K11798
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons1
Evalue2.62e-28
EggNOG OGsCOG2319@1|root,KOG3213@1|root,KOG0644@2759|Eukaryota,KOG3213@2759|Eukaryota
Descriptionregulation of cilium movement involved in cell motility
Cds size237
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.7702246-CDS-H-canaliculatus_M_contigs75536:258..4951696854092.7702246-CDS-H-canaliculatus_M_contigs75536:258..495Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75536 259..495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75536.1.1prot_H-canaliculatus_M_contigs75536.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75536 259..495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75536.1.1

>prot_H-canaliculatus_M_contigs75536.1.1 ID=prot_H-canaliculatus_M_contigs75536.1.1|Name=mRNA_H-canaliculatus_M_contigs75536.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=79bp
MRWQSAVASVCSSGDGLKLAVGTSAGSIGVLDVMTHGYTTALRSHRGAVT
AVAVDPLEERDEFATVSEDCTVRYARCC*
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mRNA from alignment at H-canaliculatus_M_contigs75536:259..495-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75536.1.1 ID=mRNA_H-canaliculatus_M_contigs75536.1.1|Name=mRNA_H-canaliculatus_M_contigs75536.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=237bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75536:259..495- (Hapterophycus canaliculatus Oshoro7m male)
ATGCGATGGCAGTCGGCGGTAGCGTCGGTGTGCTCCAGCGGGGACGGGCT
CAAGCTTGCCGTCGGCACTTCTGCGGGCTCGATCGGAGTGCTGGACGTGA
TGACCCACGGCTACACCACGGCCCTGAGGTCCCACAGGGGAGCGGTAACG
GCCGTCGCGGTGGACCCGTTGGAGGAGAGGGACGAGTTCGCCACCGTCTC
GGAAGACTGCACCGTAAGGTACGCGCGGTGCTGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75536:259..495-

>mRNA_H-canaliculatus_M_contigs75536.1.1 ID=mRNA_H-canaliculatus_M_contigs75536.1.1|Name=mRNA_H-canaliculatus_M_contigs75536.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=237bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75536:259..495- (Hapterophycus canaliculatus Oshoro7m male)
ATGCGATGGCAGTCGGCGGTAGCGTCGGTGTGCTCCAGCGGGGACGGGCT
CAAGCTTGCCGTCGGCACTTCTGCGGGCTCGATCGGAGTGCTGGACGTGA
TGACCCACGGCTACACCACGGCCCTGAGGTCCCACAGGGGAGCGGTAACG
GCCGTCGCGGTGGACCCGTTGGAGGAGAGGGACGAGTTCGCCACCGTCTC
GGAAGACTGCACCGTAAGGTACGCGCGGTGCTGCTGA
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