mRNA_H-canaliculatus_M_contigs75535.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75535.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75535.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.690e-41
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLGGTEGDDNDV 210
            RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAF+GRLLRHNRHVLWASETSRPDLGGTEGDDND+
Sbjct:  231 RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFFGRLLRHNRHVLWASETSRPDLGGTEGDDNDI 300
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K7_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.750e-40
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLGGTEGDDNDV 210
            RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAF+GRLLRHNRHVLWASETSRPDLGG EGDDND+
Sbjct:  811 RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFFGRLLRHNRHVLWASETSRPDLGGREGDDNDI 880
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA-directed (DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.410e-21
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLGGTEGDDNDV 210
            RF   P WL DRL  ARY+HLPL N+G D    MAD   GRLL  NRHVLWASE +RPDLGG E D ND 
Sbjct: 1687 RFLCMPGWLQDRLQAARYSHLPLGNLGLDPQRTMADVLLGRLLHGNRHVLWASEGTRPDLGGAEDDQNDA 1756
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6C7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.020e-16
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLG 183
            RF I PRW  DRL  ARYAH+PL N+G DA   M D  + R L HNRH+LW SE + PDLG
Sbjct:  459 RFLIFPRWFDDRLTAARYAHIPLCNLGTDALTTMIDVTFSRQLLHNRHLLWCSEGTGPDLG 519
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=2 Tax=Trichoplax TaxID=10227 RepID=B3S6C7_TRIAD)

HSP 1 Score: 80.1 bits (196), Expect = 9.250e-16
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   22 WLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLGGTEGDDNDV 210
            WL +RL  ARYAH+PL N+ AD P  + D F+ R L  N H++WAS T RPDLGG E DD+ +
Sbjct: 1627 WLENRLDHARYAHIPLGNMPADVPLFVNDLFFARYLAKNNHLIWASRTPRPDLGGKEDDDSSI 1689
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG59_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.840e-15
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   46 ARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWAS-ETSRPDLGGTEGDDNDV 210
            AR+AHLP+ N+G +  C + D   GRLL+HNRH+LWA+  T  PDLGG EGD+ND+
Sbjct:    4 ARFAHLPVGNLGENPICTVTDVLLGRLLQHNRHLLWAAPRTGHPDLGGKEGDENDI 59
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RR49_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.500e-14
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   22 WLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLGGTEGD 198
            WL  R+ C+RYAH+P++++G D    M D FY RLL  N+HV+WAS ++ PDLGG E D
Sbjct:  555 WLNMRIKCSRYAHIPVSHVGEDFAITMTDTFYTRLLDFNKHVIWASPSNLPDLGGAEED 613
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WF04_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 1.530e-14
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:   13 APRWLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLGGTEGDDNDVS 213
            A RW+A+R+  A+YA +P+ NI ADAP  +AD F+ R L   +HVLW S  SRPD+GG + D+ +VS
Sbjct: 1606 ASRWVAERISLAQYADIPVGNIPADAPLFLADVFFARKLTLAKHVLWWSPGSRPDIGGRQDDEFNVS 1672
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V9K2_AMPQE)

HSP 1 Score: 76.3 bits (186), Expect = 2.090e-14
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   13 APRWLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLGGTEGDD 201
            AP WL +RL  ARYAH+P+ N   DA    AD FY R L  + HV+WA+ T +PDLGG E DD
Sbjct: 1649 APTWLHNRLEYARYAHIPVGNFCPDAVVYAADVFYSRHLARHNHVIWATPTDQPDLGGHESDD 1711
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BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HVV8_9EUGL)

HSP 1 Score: 75.5 bits (184), Expect = 3.900e-14
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   31 DRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVLWASETSRPDLGGTEGDDN 204
            + L  +RYA++P+ N+G D   +  D  +GRLLR+N H+LW ++ +RPDLGGTEGDDN
Sbjct: 1701 EALTLSRYANVPICNLGVDLATSAMDVSFGRLLRNNSHLLWCTQGARPDLGGTEGDDN 1758
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75535.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA2.690e-4197.14polymerase epsilon catalytic subunit n=1 Tax=Ectoc... [more]
DNA1.750e-4095.71polymerase epsilon catalytic subunit n=1 Tax=Ectoc... [more]
DNA-directed1.410e-2162.86DNA polymerase n=2 Tax=Monodopsidaceae TaxID=42507... [more]
DNA1.020e-1659.02polymerase epsilon catalytic subunit (Fragment) n=... [more]
DNA9.250e-1653.97polymerase epsilon catalytic subunit n=2 Tax=Trich... [more]
DNA2.840e-1557.14polymerase epsilon catalytic subunit (Fragment) n=... [more]
DNA1.500e-1452.54polymerase epsilon catalytic subunit (Fragment) n=... [more]
DNA1.530e-1450.75polymerase epsilon catalytic subunit n=1 Tax=Linde... [more]
DNA2.090e-1453.97polymerase epsilon catalytic subunit n=1 Tax=Amphi... [more]
DNA3.900e-1451.72polymerase epsilon catalytic subunit n=1 Tax=Eutre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75535contigH-canaliculatus_M_contigs75535:211..447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQB9
Preferred namePOLE1
PFAMsDNA_pol_B,DNA_pol_B_exo1,DUF1744
Model size237
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022616,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons1
Evalue4.41e-42
EggNOG OGsCOG0417@1|root,KOG1798@2759|Eukaryota
EC2.7.7.7
DescriptionDNA replication proofreading
Cds size237
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.7354977-CDS-H-canaliculatus_M_contigs75535:210..4471696854092.7354977-CDS-H-canaliculatus_M_contigs75535:210..447Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75535 211..447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75535.1.1prot_H-canaliculatus_M_contigs75535.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75535 211..447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75535.1.1

>prot_H-canaliculatus_M_contigs75535.1.1 ID=prot_H-canaliculatus_M_contigs75535.1.1|Name=mRNA_H-canaliculatus_M_contigs75535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=79bp
RFFIAPRWLADRLLCARYAHLPLANIGADAPCAMADAFYGRLLRHNRHVL
WASETSRPDLGGTEGDDNDVSGFMRRPLL
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mRNA from alignment at H-canaliculatus_M_contigs75535:211..447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75535.1.1 ID=mRNA_H-canaliculatus_M_contigs75535.1.1|Name=mRNA_H-canaliculatus_M_contigs75535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=237bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75535:211..447- (Hapterophycus canaliculatus Oshoro7m male)
AGGTTCTTCATCGCGCCGAGGTGGCTCGCCGACCGGCTTCTGTGCGCGCG
GTACGCCCATCTCCCCCTGGCCAACATCGGGGCGGACGCGCCTTGTGCCA
TGGCCGACGCGTTCTACGGACGGCTGTTGCGGCACAACCGACACGTGCTG
TGGGCGTCGGAGACCTCGAGACCAGACCTCGGGGGAACGGAGGGGGACGA
CAACGACGTGAGTGGGTTTATGCGGAGGCCGCTGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75535:211..447-

>mRNA_H-canaliculatus_M_contigs75535.1.1 ID=mRNA_H-canaliculatus_M_contigs75535.1.1|Name=mRNA_H-canaliculatus_M_contigs75535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=237bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75535:211..447- (Hapterophycus canaliculatus Oshoro7m male)
AGGTTCTTCATCGCGCCGAGGTGGCTCGCCGACCGGCTTCTGTGCGCGCG
GTACGCCCATCTCCCCCTGGCCAACATCGGGGCGGACGCGCCTTGTGCCA
TGGCCGACGCGTTCTACGGACGGCTGTTGCGGCACAACCGACACGTGCTG
TGGGCGTCGGAGACCTCGAGACCAGACCTCGGGGGAACGGAGGGGGACGA
CAACGACGTGAGTGGGTTTATGCGGAGGCCGCTGCTG
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