mRNA_H-canaliculatus_M_contigs75533.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75533.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75533.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: DEAD (box helicase DEAD/DEAH box helicase-like protein (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP7_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.670e-28
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            QVEREFNRIAPELSSLAVYGGTAQGPQIGEMR+GVDIIVGTPGRIIDHIEQGNLNL
Sbjct:  292 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRRGVDIIVGTPGRIIDHIEQGNLNL 347
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: RNA (helicase n=5 Tax=Deinococcus TaxID=1298 RepID=Q1J0S9_DEIGD)

HSP 1 Score: 79.7 bits (195), Expect = 5.560e-16
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            QV  EF++  P+LS++ VYGG A GPQ   +R+GVD++VGTPGR+IDH+E+GNL+L
Sbjct:   91 QVAEEFSKSGPQLSTVTVYGGAAYGPQENALRRGVDVVVGTPGRLIDHLERGNLDL 146
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: RNA (helicase n=7 Tax=Deinococcus TaxID=1298 RepID=A0A345IGB7_9DEIO)

HSP 1 Score: 79.0 bits (193), Expect = 1.040e-15
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            QV  EF++ AP LS++ VYGG A GPQ   +R+GVD++VGTPGR+IDH+E+GNL+L
Sbjct:   86 QVADEFSKSAPGLSTVTVYGGAAYGPQENALRRGVDVVVGTPGRLIDHLERGNLDL 141
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: RNA (helicase n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) TaxID=709986 RepID=E8UAP2_DEIML)

HSP 1 Score: 77.0 bits (188), Expect = 4.940e-15
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            QV  EF + APEL +L VYGG A GPQ   +  GVD+IVGTPGR+IDHIE+GNL L
Sbjct:   86 QVAEEFKKSAPELLTLTVYGGAAYGPQEKALYGGVDVIVGTPGRVIDHIERGNLKL 141
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: RNA (helicase n=1 Tax=Deinococcus hopiensis KR-140 TaxID=695939 RepID=A0A1W1UBN3_9DEIO)

HSP 1 Score: 76.6 bits (187), Expect = 6.740e-15
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            QV  EF++ AP L+++ VYGG    PQ   MR+GVD++VGTPGR+IDH+E+GNL+L
Sbjct:   86 QVAEEFSKSAPSLTTVTVYGGAPYAPQENSMRRGVDVVVGTPGRLIDHLERGNLDL 141
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: RNA (helicase n=2 Tax=Deinococcus TaxID=1298 RepID=A0A2I9D1Y6_9DEIO)

HSP 1 Score: 76.6 bits (187), Expect = 6.740e-15
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            QV  EF++    L+++ VYGG + GPQ G +R+GVD++VGTPGRIIDH+E+GNL+L
Sbjct:   86 QVAEEFSKSGQHLATVTVYGGASYGPQEGALRRGVDVVVGTPGRIIDHLERGNLDL 141
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: RNA (helicase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UL39_CAPO3)

HSP 1 Score: 76.3 bits (186), Expect = 9.250e-15
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            QV R F  +AP+L+S+ VYGG   GPQ   MRKG+D++VGTPGR+IDH  +GNL+L
Sbjct:  283 QVHRVFESVAPQLASICVYGGVEYGPQELAMRKGLDVVVGTPGRLIDHYNRGNLSL 338
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IQZ7_GUITC)

HSP 1 Score: 75.9 bits (185), Expect = 1.080e-14
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            Q++REF RI PE++S  VYGG + G Q+  +RKGVD++VGTPGR+IDH+  G L++
Sbjct:   89 QIDREFTRIQPEVASTCVYGGVSIGMQVSALRKGVDVVVGTPGRLIDHLVNGTLDV 144
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4HA65_GUITH)

HSP 1 Score: 75.9 bits (185), Expect = 1.260e-14
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            Q++REF RI PE++S  VYGG + G Q+  +RKGVD++VGTPGR+IDH+  G L++
Sbjct:  192 QIDREFTRIQPEVASTCVYGGVSIGMQVSALRKGVDVVVGTPGRLIDHLVNGTLDV 247
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BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NE20_9CRYP)

HSP 1 Score: 74.3 bits (181), Expect = 1.660e-14
Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIEQGNLNL 168
            Q++REF RI P+++S  VYGG + G Q+G +RKGVD++VGTPGR+IDH+    L++
Sbjct:   28 QIQREFERIQPDVASTCVYGGVSIGMQVGAIRKGVDVVVGTPGRLIDHLVNATLDV 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75533.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DEAD3.670e-2898.21box helicase DEAD/DEAH box helicase-like protein (... [more]
RNA5.560e-1658.93helicase n=5 Tax=Deinococcus TaxID=1298 RepID=Q1J0... [more]
RNA1.040e-1560.71helicase n=7 Tax=Deinococcus TaxID=1298 RepID=A0A3... [more]
RNA4.940e-1564.29helicase n=1 Tax=Deinococcus maricopensis (strain ... [more]
RNA6.740e-1557.14helicase n=1 Tax=Deinococcus hopiensis KR-140 TaxI... [more]
RNA6.740e-1557.14helicase n=2 Tax=Deinococcus TaxID=1298 RepID=A0A2... [more]
RNA9.250e-1558.93helicase n=1 Tax=Capsaspora owczarzaki (strain ATC... [more]
Uncharacterized1.080e-1455.36protein n=1 Tax=Guillardia theta (strain CCMP2712)... [more]
Hypothetical1.260e-1455.36protein n=1 Tax=Guillardia theta TaxID=55529 RepID... [more]
Hypothetical1.660e-1453.57protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75533contigH-canaliculatus_M_contigs75533:34..213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LIP7
PFAMsDEAD,Helicase_C
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K16911
KEGG Pathwayko01110,map01110
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.02e-29
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size180
COG categoryL
BRITEko00000,ko01000,ko03009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.6986675-CDS-H-canaliculatus_M_contigs75533:33..2131696854092.6986675-CDS-H-canaliculatus_M_contigs75533:33..213Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75533 34..213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75533.1.1prot_H-canaliculatus_M_contigs75533.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75533 34..213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75533.1.1

>prot_H-canaliculatus_M_contigs75533.1.1 ID=prot_H-canaliculatus_M_contigs75533.1.1|Name=mRNA_H-canaliculatus_M_contigs75533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=60bp
QVEREFNRIAPELSSLAVYGGTAQGPQIGEMRKGVDIIVGTPGRIIDHIE
QGNLNLVRA*
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mRNA from alignment at H-canaliculatus_M_contigs75533:34..213-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75533.1.1 ID=mRNA_H-canaliculatus_M_contigs75533.1.1|Name=mRNA_H-canaliculatus_M_contigs75533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75533:34..213- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTCGAGCGCGAGTTCAACCGCATCGCGCCGGAGCTTTCTTCCCTGGC
CGTCTACGGGGGCACCGCGCAGGGGCCCCAGATCGGGGAGATGCGCAAGG
GTGTGGACATCATCGTCGGGACCCCCGGCCGCATCATCGACCACATCGAG
CAGGGCAACCTTAACCTGGTGAGAGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75533:34..213-

>mRNA_H-canaliculatus_M_contigs75533.1.1 ID=mRNA_H-canaliculatus_M_contigs75533.1.1|Name=mRNA_H-canaliculatus_M_contigs75533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75533:34..213- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTCGAGCGCGAGTTCAACCGCATCGCGCCGGAGCTTTCTTCCCTGGC
CGTCTACGGGGGCACCGCGCAGGGGCCCCAGATCGGGGAGATGCGCAAGG
GTGTGGACATCATCGTCGGGACCCCCGGCCGCATCATCGACCACATCGAG
CAGGGCAACCTTAACCTGGTGAGAGCGTGA
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