mRNA_H-canaliculatus_M_contigs75524.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75524.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs75524.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: Similar (to L-xylulose reductase (XR) (Dicarbonyl/L-xylulose reductase) n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G8H1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.440e-28
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1

Query:   10 ALRFSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGITTT 180
            A  + EPEKGDPMIDRTPLGRFAEPWEMAHGVV+LVSPSSSQMCGQMLLLDGGITTT
Sbjct:  215 AKAWGEPEKGDPMIDRTPLGRFAEPWEMAHGVVYLVSPSSSQMCGQMLLLDGGITTT 271

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.030e-27
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1

Query:   10 ALRFSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGITTT 180
            A  + EPEKGDPM+DRTPLGRFAEPWEMAHGVV+LVSPSSSQMCGQMLLLDGGITTT
Sbjct:  411 AKAWGEPEKGDPMVDRTPLGRFAEPWEMAHGVVYLVSPSSSQMCGQMLLLDGGITTT 467

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.570e-27
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 1

Query:   19 FSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGITTT 180
            + +PEKGDPM+DRTPLGRFAEPWEMAHGVV+LVSPSS QMCGQMLLLDGGITTT
Sbjct:  200 WGKPEKGDPMVDRTPLGRFAEPWEMAHGVVYLVSPSSIQMCGQMLLLDGGITTT 253

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: 2-dehydro-3-deoxy-D-gluconate (5-dehydrogenase n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518B898_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.120e-11
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1

Query:   19 FSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGITTT 180
            +S+P K  PM+DR P+GRF EP E+A   +FL SP+S  +CGQ++ +DGGIT T
Sbjct:  203 WSDPAKSGPMLDRIPMGRFGEPVEIADLALFLASPASDFVCGQVIEIDGGITQT 256

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: Glucose (1-dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6G6X370_9HYPH)

HSP 1 Score: 63.2 bits (152), Expect = 2.150e-10
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   19 FSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGIT 174
            + +P KG PM+DRTPLGRF +P E+A  V++L S +S  +CG+ +L+DGG T
Sbjct:  203 WGDPAKGKPMLDRTPLGRFGKPQEVADLVLYLASHASDLVCGETILIDGGFT 254

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: SDR (family oxidoreductase n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PZK8_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 2.820e-10
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1

Query:   19 FSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGIT 174
            + +P KG PM+DRTPLGRF EP E+A   +++ SP+S  M G +++L+GG T
Sbjct:   66 WGDPAKGQPMLDRTPLGRFGEPVEVADLALYMASPASDLMNGAIVMLEGGFT 117

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: UgpC (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TZN2_SYMMI)

HSP 1 Score: 61.2 bits (147), Expect = 1.810e-9
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1

Query:   19 FSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGITTT 180
            + +P KG PM+D+TPLGRF EP E+A   +++ SP+S  M G +++L+GG T T
Sbjct: 1099 WGDPAKGQPMLDKTPLGRFGEPVEVADLALYMASPASDLMNGAIVMLEGGFTAT 1152

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: Putative (short-chain dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.210e-9
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1

Query:   37 GDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGIT 174
            G+PM  RTP+GRFAEP E+A+ VV+L S +S+ +CGQ LL++GG+T
Sbjct:  213 GEPMRQRTPIGRFAEPDEVANMVVYLCSDASNILCGQTLLMEGGLT 258

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: Short-chain (dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.250e-9
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1

Query:   19 FSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGGIT 174
            + +P K  PM++RTP+GRF EPWE+A+ VVFL S + +   GQ + +DGG T
Sbjct:  287 WGDPAKSRPMLERTPIGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYT 338

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BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y4J0_PLABS)

HSP 1 Score: 60.5 bits (145), Expect = 2.330e-9
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:   19 FSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQMLLLDGG 168
            +S+P K  PM++RTPLGRFAEP + A  VV+L+SP S  + GQ + +DGG
Sbjct:  215 WSDPVKAKPMMERTPLGRFAEPEDTASAVVYLLSPQSGMVHGQTIAIDGG 264

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75524.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Similar	1.440e-28	91.23	to L-xylulose reductase (XR) (Dicarbonyl/L-xylulos...	[more]
Uncharacterized	3.030e-27	89.47	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	8.570e-27	88.89	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
2-dehydro-3-deoxy-D-gluconate	3.120e-11	53.70	5-dehydrogenase n=1 Tax=Planctomycetes bacterium P...	[more]
Glucose	2.150e-10	51.92	1-dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=...	[more]
SDR	2.820e-10	50.00	family oxidoreductase n=1 Tax=Kiloniellaceae bacte...	[more]
UgpC	1.810e-9	48.15	protein n=1 Tax=Symbiodinium microadriaticum TaxID...	[more]
Putative	2.210e-9	58.70	short-chain dehydrogenase n=1 Tax=Tribonema minus ...	[more]
Short-chain	2.250e-9	50.00	dehydrogenase/reductase SDR n=2 Tax=Ectocarpus Tax...	[more]
Uncharacterized	2.330e-9	54.00	protein n=2 Tax=Plasmodiophora brassicae TaxID=373...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75524	contig	H-canaliculatus_M_contigs75524:15..194 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7G8H1
Preferred name	DCXR
PFAMs	adh_short,adh_short_C2
Model size	180
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00102,RC00154,RC01491
KEGG ko	ko:K00081,ko:K03331
KEGG Reaction	R01904,R02581,R09420
KEGG Pathway	ko00040,ko00590,ko00980,ko01100,map00040,map00590,map00980,map01100
KEGG Module	M00014
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003824,GO:0004090,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005874,GO:0005881,GO:0005886,GO:0005902,GO:0005903,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006006,GO:0006063,GO:0006064,GO:0006082,GO:0006116,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016052,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016651,GO:0016655,GO:0019318,GO:0019321,GO:0019323,GO:0019362,GO:0019585,GO:0019637,GO:0019640,GO:0019674,GO:0019752,GO:0022607,GO:0032787,GO:0034641,GO:0042802,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0043621,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046395,GO:0046483,GO:0046496,GO:0050038,GO:0051167,GO:0051186,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072524,GO:0090407,GO:0098858,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:1901135,GO:1901137,GO:1901159,GO:1901360,GO:1901564,GO:1901575,GO:1901576
Exons	1
Evalue	2.36e-29
EggNOG OGs	KOG1207@1\|root,KOG1207@2759\|Eukaryota
EC	1.1.1.10,1.1.1.184
Description	L-xylulose reductase (NAD ) activity
Cds size	180
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854092.5923858-CDS-H-canaliculatus_M_contigs75524:14..194	1696854092.5923858-CDS-H-canaliculatus_M_contigs75524:14..194	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75524 15..194 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75524.1.1	prot_H-canaliculatus_M_contigs75524.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75524 15..194 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75524:15..194-
coding sequence from alignment at H-canaliculatus_M_contigs75524:15..194-

protein sequence of mRNA_H-canaliculatus_M_contigs75524.1.1

>prot_H-canaliculatus_M_contigs75524.1.1 ID=prot_H-canaliculatus_M_contigs75524.1.1|Name=mRNA_H-canaliculatus_M_contigs75524.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=60bp
PFPALRFSEPEKGDPMIDRTPLGRFAEPWEMAHGVVFLVSPSSSQMCGQM
LLLDGGITTT

mRNA from alignment at H-canaliculatus_M_contigs75524:15..194-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75524.1.1 ID=mRNA_H-canaliculatus_M_contigs75524.1.1|Name=mRNA_H-canaliculatus_M_contigs75524.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75524:15..194- (Hapterophycus canaliculatus Oshoro7m male)
CCTTTTCCCGCTCTCCGATTCAGCGAGCCCGAGAAGGGTGACCCCATGAT
CGACCGCACCCCCCTCGGGCGCTTTGCGGAGCCCTGGGAGATGGCACACG
GTGTTGTGTTTCTGGTGAGCCCATCCTCTAGCCAGATGTGCGGCCAGATG
CTCCTCCTCGACGGCGGCATCACCACCACG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75524:15..194-

>mRNA_H-canaliculatus_M_contigs75524.1.1 ID=mRNA_H-canaliculatus_M_contigs75524.1.1|Name=mRNA_H-canaliculatus_M_contigs75524.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75524:15..194- (Hapterophycus canaliculatus Oshoro7m male)
CCTTTTCCCGCTCTCCGATTCAGCGAGCCCGAGAAGGGTGACCCCATGAT
CGACCGCACCCCCCTCGGGCGCTTTGCGGAGCCCTGGGAGATGGCACACG
GTGTTGTGTTTCTGGTGAGCCCATCCTCTAGCCAGATGTGCGGCCAGATG
CTCCTCCTCGACGGCGGCATCACCACCACG