mRNA_H-canaliculatus_M_contigs7552.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7552.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7552.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Cytosolic (Fe-S cluster assembly factor NUBP1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JII2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.410e-46
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 MADVTSTALSPPAPPQQAVSNVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            MAD  ST    P P     S +P+NANEGCVGPAA+EAGKAA CAGCPNK+ACASGKGREVDPAVAEVAERLS VKH+VLVLSGKGGVGKSTVSCQLAFSLAAQGKQ
Sbjct:    1 MADEASTTPLRPVPTAPMASGIPSNANEGCVGPAAEEAGKAAGCAGCPNKTACASGKGREVDPAVAEVAERLSGVKHVVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 107
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BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5K7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 8.350e-33
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:   52 AVSNVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            AV++ PANAN GCVGP  ++AGKA+ACAGCPN+ ACASG G+  DPAV  VA++L+++KH +LVLSGKGGVGKSTV+CQLAFSLAA+G Q
Sbjct:    3 AVADAPANANAGCVGPKNEQAGKASACAGCPNQKACASGAGKAEDPAVGVVADKLANIKHKILVLSGKGGVGKSTVACQLAFSLAARGNQ 92
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BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Cytosolic (Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.910e-32
Identity = 63/89 (70.79%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:   55 VSNVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            +S VPANAN GCVGP +  AGKA+ACAGCPN++ACASG  ++ DP+VA+VA RL+ VKH VLVLSGKGGVGKST++CQLAF+LA+QG Q
Sbjct:    1 MSAVPANANAGCVGPQSDAAGKASACAGCPNQAACASGAAKQTDPSVAQVAARLADVKHTVLVLSGKGGVGKSTMACQLAFALASQGHQ 89
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BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Cytosolic (Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWA7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.240e-31
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:   52 AVSNVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            A S +P NAN+ CVGP + EAGK +ACAGCPN+SACASG GR  DPA+ +V +RL+ V+H +LVLSGKGGVGKST +CQLAF+LAA+GKQ
Sbjct:    6 ASSGIPENANQNCVGPQSTEAGKVSACAGCPNQSACASGAGRTEDPALKQVTDRLAQVRHKILVLSGKGGVGKSTFACQLAFTLAAKGKQ 95
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BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Nucleotide-binding (protein 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YPZ7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.510e-30
Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:   61 NVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            + P+NANE CVGP +++AGKA  CAGCPN+S CASG  R+ DPAV++V +RLS VKH +LVLSGKGGVGKSTV+CQLAF+LA +G Q
Sbjct:    4 SAPSNANEQCVGPQSEQAGKADGCAGCPNQSLCASGAARQPDPAVSDVKQRLSGVKHKLLVLSGKGGVGKSTVACQLAFALAGKGYQ 90
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BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Cytosolic (Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQD0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.040e-29
Identity = 56/87 (64.37%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:   61 NVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            N+P NANE CVGP + EAG+A  CAGCPN+S C+SG GR  DPA++ V +RL+ +KH +LVLSGKGGVGKST++CQLAF+LA +G Q
Sbjct:    4 NIPTNANESCVGPQSDEAGQATGCAGCPNQSVCSSGAGRVFDPAISHVKQRLAGIKHKLLVLSGKGGVGKSTIACQLAFALAGKGYQ 90
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BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Cytosolic (Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNV4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.260e-29
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   46 QQAVSNVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGR-EVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGK 318
            + A+S  PANANE CVGP+++ AGKA +CAGCPN++ACASG GR +   A+A V +RL+SVKH +LVLSGKGGVGKST SCQLAF+LAAQGK
Sbjct:   22 RSAMSAKPANANETCVGPSSETAGKADSCAGCPNQNACASGAGRGDAAAALAPVVDRLASVKHTILVLSGKGGVGKSTFSCQLAFALAAQGK 113
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Cytosolic (Fe-S cluster assembly factor NUBP1 homolog n=20 Tax=Phytophthora TaxID=4783 RepID=H3GAM5_PHYRM)

HSP 1 Score: 116 bits (291), Expect = 3.910e-29
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:   61 NVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            + PANAN+ CVGP +++AGK   CAGCPN+S CASG  R+ DPAV++V +RL+ VKH +LVLSGKGGVGKSTV+CQLAF+LA QG Q
Sbjct:    4 SAPANANDSCVGPQSEQAGKVDGCAGCPNQSLCASGAARQPDPAVSDVKQRLAGVKHKLLVLSGKGGVGKSTVACQLAFALAGQGFQ 90
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Cytosolic (Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0K0_BRELC)

HSP 1 Score: 115 bits (289), Expect = 5.610e-29
Identity = 56/89 (62.92%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:   55 VSNVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            V+++P+NANE CVGP +++AGKA  CAGCPN+S CASG  R+ D A ++V +RL+ +KH +LVLSGKGGVGKST++CQLAF+LA QG Q
Sbjct:    2 VTSIPSNANEECVGPQSEQAGKADGCAGCPNQSVCASGAARQPDTAASDVKQRLAGIKHKILVLSGKGGVGKSTIACQLAFALAGQGFQ 90
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Match: Cytosolic (Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A892_PLAHL)

HSP 1 Score: 115 bits (288), Expect = 8.140e-29
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:   61 NVPANANEGCVGPAAQEAGKAAACAGCPNKSACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFSLAAQGKQ 321
            +VPANANE CVGP ++ AGK   C+GCPN+S CASG  R+ DPAV++V +RL SVKH +LVLSGKGGVGKST++CQLAF+LA++G Q
Sbjct:    4 SVPANANEQCVGPQSELAGKVDGCSGCPNQSVCASGAARQPDPAVSDVKQRLKSVKHKLLVLSGKGGVGKSTIACQLAFALASKGFQ 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7552.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cytosolic1.410e-4681.31Fe-S cluster assembly factor NUBP1 homolog n=2 Tax... [more]
Hypothetical8.350e-3370.00protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Cytosolic1.910e-3270.79Fe-S cluster assembly factor NUBP1 homolog n=1 Tax... [more]
Cytosolic4.240e-3167.78Fe-S cluster assembly factor NUBP1 homolog n=1 Tax... [more]
Nucleotide-binding1.510e-3067.82protein 1 (Fragment) n=1 Tax=Phytophthora palmivor... [more]
Cytosolic1.040e-2964.37Fe-S cluster assembly factor NUBP1 homolog n=1 Tax... [more]
Cytosolic3.260e-2968.48Fe-S cluster assembly factor NUBP1 homolog n=1 Tax... [more]
Cytosolic3.910e-2966.67Fe-S cluster assembly factor NUBP1 homolog n=20 Ta... [more]
Cytosolic5.610e-2962.92Fe-S cluster assembly factor NUBP1 homolog n=1 Tax... [more]
Cytosolic8.140e-2966.67Fe-S cluster assembly factor NUBP1 homolog n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7552contigH-canaliculatus_M_contigs7552:4003..5257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LDZ4
Preferred nameNBP35
PFAMsParA
Model size321
Max annot lvl2759|Eukaryota
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K03593,ko:K12316
KEGG ReactionR00028,R00801,R00802
KEGG Pathwayko00052,ko00500,ko01100,ko04142,map00052,map00500,map01100,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001558,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008033,GO:0008104,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0010564,GO:0010639,GO:0010824,GO:0010826,GO:0010948,GO:0015630,GO:0016020,GO:0016043,GO:0016070,GO:0016226,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0031344,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036094,GO:0040008,GO:0042592,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044572,GO:0045786,GO:0046483,GO:0046605,GO:0046606,GO:0046872,GO:0046914,GO:0046916,GO:0046983,GO:0048037,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051129,GO:0051179,GO:0051186,GO:0051493,GO:0051494,GO:0051536,GO:0051539,GO:0051540,GO:0051640,GO:0051641,GO:0051642,GO:0051726,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060491,GO:0061842,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0071944,GO:0072697,GO:0090304,GO:0097159,GO:0098771,GO:0120032,GO:0120035,GO:1901265,GO:1901360,GO:1901363,GO:1902017,GO:1902115,GO:1902494,GO:1902855,GO:1904564,GO:1904949,GO:1990229,GO:1990778
Exons2
Evalue2.7e-49
EggNOG OGsCOG0489@1|root,KOG3022@2759|Eukaryota
EC3.2.1.20
DescriptionComponent of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins
Cds size321
COG categoryD
CAZyGH31
BRITEko00000,ko00001,ko01000,ko03029,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.5290763-CDS-H-canaliculatus_M_contigs7552:4002..41921696854092.5290763-CDS-H-canaliculatus_M_contigs7552:4002..4192Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7552 4003..4192 +
1696854092.548778-CDS-H-canaliculatus_M_contigs7552:5126..52571696854092.548778-CDS-H-canaliculatus_M_contigs7552:5126..5257Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7552 5127..5257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7552.1.1prot_H-canaliculatus_M_contigs7552.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7552 4003..5257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7552.1.1

>prot_H-canaliculatus_M_contigs7552.1.1 ID=prot_H-canaliculatus_M_contigs7552.1.1|Name=mRNA_H-canaliculatus_M_contigs7552.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=107bp
MADVTSTALSPPAPPQQAVSNVPANANEGCVGPAAQEAGKAAACAGCPNK
SACASGKGREVDPAVAEVAERLSSVKHIVLVLSGKGGVGKSTVSCQLAFS
LAAQGKQ
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mRNA from alignment at H-canaliculatus_M_contigs7552:4003..5257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7552.1.1 ID=mRNA_H-canaliculatus_M_contigs7552.1.1|Name=mRNA_H-canaliculatus_M_contigs7552.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1255bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7552:4003..5257+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAGACGTAACATCTACGGCGCTGTCACCACCGGCACCACCGCAGCA
GGCGGTCTCCAATGTACCTGCAAATGCGAACGAGGGATGTGTCGGACCTG
CGGCTCAGGAAGCAGGCAAAGCTGCAGCTTGCGCCGGCTGCCCTAACAAG
TCGGCCTGCGCCTCTGGAAAAGGCAGAGAGGTCGACCCAGGTGAGAGAGC
CAGCGATTGAACGCATGTGGGAATAGGTGTCACGTGTGCGTGCGTTCTCG
AGTGCAGCATTTGCTTGTGGTTGGCGTGGATTTTGAAAATAATCATGCCG
CGCAAGCCTACGCCACAAGTCATAGCCTAGGATCCGCTCTGAACAGCAGT
ATTGTAAGTAAAATTGATCTCGGCGGGGAGAAAACACGAAACAGCGGGGT
GTTCCTCTCCTGTCCTCGGGTCTCCGGTCCCCTGATTTGAATCCGTTCTC
CTGGTGTTGGGTCGAGCTAAGGTTCTAGGTTCAAACTTGGTTTGGTAGGT
GATGTCCTCCTTAGGCAGGTCTAGAGGGTTGCAACACTTGAGCAACCGCA
CCGCCGACCAGGCTTTTGAGTATGGATTCGAAACGGAGGACGATTACCTC
CTTGGAAGCTTGTCTTTCGGATTCCGCGAATTGTCGTTTACGAACAGGAC
CTGCTTGGGTAGATTTAGAGCATCAACATCTTAACACCCATTGCTGGGAT
GCAGCCCCTGCACGTCAGACACGATTTGACTGCTGTCATAGGGAGAGTGG
AGTCCTAATCTGAGTTTGTGGTTGGGTATTTTTACAAAGCAGCGACTGGA
AACGGACAAGACCCAACTCGGTATCCTTTCATGTGGAGGACGAAAAGTTG
TGGGTGGCGAGCACGAAGACCCACCGTGTGACAGCTGCGCGGGAGATAAA
GACCGGTGGAGCTTGCCGGAGAAAGGGCAGCAAAACTGGTGTCTAGTGTT
GGAAGAGCAGTCGTGGTATTGATGGGCGCATGTGTCGTGCATACCGTTCA
TTTAAATGAAACGGATGGTTTGATCTCCACGGGGCACCTTCGACGTGTGT
ACGAAGGAGTAGTGCTCCCCCCGCAAGGACCCACCCAGCCCTTGCTTATG
TCGCCCGTCTATCTTGTTTCGTAGCGGTGGCCGAAGTCGCGGAGAGGCTT
TCAAGCGTGAAGCACATCGTCCTGGTCCTGTCAGGAAAGGGGGGCGTCGG
GAAGAGCACCGTCTCTTGCCAGCTCGCCTTTTCTTTGGCTGCGCAGGGAA
AGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7552:4003..5257+

>mRNA_H-canaliculatus_M_contigs7552.1.1 ID=mRNA_H-canaliculatus_M_contigs7552.1.1|Name=mRNA_H-canaliculatus_M_contigs7552.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=321bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7552:4003..5257+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAGACGTAACATCTACGGCGCTGTCACCACCGGCACCACCGCAGCA
GGCGGTCTCCAATGTACCTGCAAATGCGAACGAGGGATGTGTCGGACCTG
CGGCTCAGGAAGCAGGCAAAGCTGCAGCTTGCGCCGGCTGCCCTAACAAG
TCGGCCTGCGCCTCTGGAAAAGGCAGAGAGGTCGACCCAGCGGTGGCCGA
AGTCGCGGAGAGGCTTTCAAGCGTGAAGCACATCGTCCTGGTCCTGTCAG
GAAAGGGGGGCGTCGGGAAGAGCACCGTCTCTTGCCAGCTCGCCTTTTCT
TTGGCTGCGCAGGGAAAGCAG
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