mRNA_H-canaliculatus_M_contigs75506.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75506.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75506.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75506.1.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.230e-6
Identity = 25/42 (59.52%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   52 VNLAIIIDGSSSVNSTNFALSKEFAKDAVDAFADENLFVNGG 177
            VN+A+IID S SV++ ++ LSKEFAK+ V +FA++NLF NGG
Sbjct:   91 VNVAVIIDASGSVSTADWELSKEFAKNTVASFAEQNLFTNGG 132
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BLAST of mRNA_H-canaliculatus_M_contigs75506.1.1 vs.
Match: Similar (to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.650e-6
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   52 VNLAIIIDGSSSVNSTNFALSKEFAKDAVDAFADENLFVNGG 177
            VN+A+IID S SV + ++ LSKEFAK+ V +FA++NLF NGG
Sbjct:   74 VNVAVIIDASGSVGTADWELSKEFAKNTVASFAEQNLFTNGG 115
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BLAST of mRNA_H-canaliculatus_M_contigs75506.1.1 vs.
Match: Glycin-rich (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 5.960e-6
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   52 VNLAIIIDGSSSVNSTNFALSKEFAKDAVDAFADENLFVNGG 177
            VN+A+IID S SV + ++ LSKEFAK+ V +FA +NLF NGG
Sbjct:   81 VNVAVIIDASVSVGTADWELSKEFAKNTVASFAQQNLFTNGG 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75506.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
VWFA1.230e-659.52domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Similar1.650e-659.52to collagen, partial n=2 Tax=Ectocarpus siliculosu... [more]
Glycin-rich5.960e-659.52protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75506contigH-canaliculatus_M_contigs75506:14..190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLU2
PFAMsVWA
Model size177
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.05e-07
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota
Descriptioncalcium ion binding
Cds size177
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.391337-CDS-H-canaliculatus_M_contigs75506:13..1901696854092.391337-CDS-H-canaliculatus_M_contigs75506:13..190Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75506 14..190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75506.1.1prot_H-canaliculatus_M_contigs75506.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75506 14..190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75506.1.1

>prot_H-canaliculatus_M_contigs75506.1.1 ID=prot_H-canaliculatus_M_contigs75506.1.1|Name=mRNA_H-canaliculatus_M_contigs75506.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=59bp
TYTNAFQQTSEHQSKPQVNLAIIIDGSSSVNSTNFALSKEFAKDAVDAFA
DENLFVNGG
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mRNA from alignment at H-canaliculatus_M_contigs75506:14..190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75506.1.1 ID=mRNA_H-canaliculatus_M_contigs75506.1.1|Name=mRNA_H-canaliculatus_M_contigs75506.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=177bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75506:14..190- (Hapterophycus canaliculatus Oshoro7m male)
ACCTACACCAACGCCTTCCAACAAACATCTGAACACCAATCGAAACCTCA
GGTCAACTTGGCCATCATCATCGACGGCTCCAGCAGCGTCAACTCGACGA
ACTTCGCCCTGTCGAAAGAGTTTGCGAAGGACGCGGTGGACGCCTTCGCG
GACGAGAACCTTTTCGTCAACGGCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75506:14..190-

>mRNA_H-canaliculatus_M_contigs75506.1.1 ID=mRNA_H-canaliculatus_M_contigs75506.1.1|Name=mRNA_H-canaliculatus_M_contigs75506.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=177bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75506:14..190- (Hapterophycus canaliculatus Oshoro7m male)
ACCTACACCAACGCCTTCCAACAAACATCTGAACACCAATCGAAACCTCA
GGTCAACTTGGCCATCATCATCGACGGCTCCAGCAGCGTCAACTCGACGA
ACTTCGCCCTGTCGAAAGAGTTTGCGAAGGACGCGGTGGACGCCTTCGCG
GACGAGAACCTTTTCGTCAACGGCGGG
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