mRNA_H-canaliculatus_M_contigs75504.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75504.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs75504.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: DRP, (dynamin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 4.970e-24
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            RPSGPTLTLIDLP ITHNS D  QD+HTETVNLVK++IEN+NMVILVV PAMDDFAN
Sbjct:  136 RPSGPTLTLIDLPDITHNSPDGTQDIHTETVNLVKKFIENDNMVILVVIPAMDDFAN 192

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: Dynamin-like (protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX46_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 9.120e-16
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            RPSGPT TLID+PGITH +AD   DVH  T  +V+ YI++ NMVILVV PA DDF N
Sbjct:   19 RPSGPTFTLIDIPGITHMTADGQADVHEITKGMVESYIKDPNMVILVVIPATDDFGN 75

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: DRP4C (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812V0V8_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 5.960e-13
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            R  GP L+LIDLPG+THN A+   ++H  TV+LVK+YIE E MVIL V PAM DF N
Sbjct:  145 RRDGPQLSLIDLPGVTHN-AEKMSNIHEVTVSLVKEYIEPEEMVILCVIPAMSDFGN 200

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG75_CHOCR)

HSP 1 Score: 70.9 bits (172), Expect = 6.410e-13
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            R  GP +TLIDLPGITH+  + G+D+H  T ++VK+Y++ ENM+ LVV PA DDF N
Sbjct:  125 RSKGPVMTLIDLPGITHDDGE-GRDIHGITADIVKKYLKYENMIALVVIPANDDFGN 180

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: DRP4C (protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KZ97_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 6.440e-13
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            R  GP L+LIDLPG+THN A+   ++H  TV+LVK+YIE E MVIL V PAM DF N
Sbjct:  465 RRDGPQLSLIDLPGVTHN-AEKMSNIHEVTVDLVKEYIEPEEMVILCVIPAMSDFGN 520

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LGD8_POLGL)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-12
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            R  GP L+LIDLPG+THN AD   D+H  TV+LV++Y+ +E +VIL V PAM DF N
Sbjct:  242 RKDGPQLSLIDLPGVTHN-ADKMADIHEVTVSLVEEYVRHEEVVILCVIPAMSDFGN 297

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2ELG6_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 1.340e-12
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1

Query:    7 SGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            SGPTLTLIDLPGITH   +S  D+H   V L++ YI NE MVIL V PA+ DF N
Sbjct:  100 SGPTLTLIDLPGITHVH-ESQSDIHDVIVGLLRTYIANEQMVILAVVPAVSDFGN 153

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: Shi (protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812VRP6_SYMPI)

HSP 1 Score: 69.3 bits (168), Expect = 2.220e-12
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            R  GP L+LIDLPGITHN+     D+H  TV LV+QYI+ E MVIL V PAM DF N
Sbjct:   66 RGEGPQLSLIDLPGITHNATKMA-DIHEVTVQLVEQYIKPEEMVILCVIPAMSDFGN 121

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WRG7_ALECA)

HSP 1 Score: 66.6 bits (161), Expect = 2.290e-12
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            R +GP L+LIDLPG+THN AD   D+H  TV LV+ Y+  E  +IL V PAM DF N
Sbjct:   55 RSTGPQLSLIDLPGVTHN-ADLMADIHEVTVELVRDYVRPEETIILCVLPAMSDFGN 110

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BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Match: DRP4C (protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812J865_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 1.460e-11
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1

Query:    1 RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTPAMDDFAN 171
            R  G  L+LIDLPG+THN A+   ++H  TV+LVK+YIE E MVIL V PAM DF N
Sbjct:  154 RRDGLQLSLIDLPGVTHN-AEKMSNIHEVTVSLVKEYIEPEEMVILCVIPAMSDFGN 209

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75504.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
DRP,	4.970e-24	84.21	dynamin-related protein n=1 Tax=Ectocarpus silicul...	[more]
Dynamin-like	9.120e-16	64.91	protein n=1 Tax=Chrysochromulina tobinii TaxID=146...	[more]
DRP4C	5.960e-13	61.40	protein n=1 Tax=Symbiodinium necroappetens TaxID=1...	[more]
Uncharacterized	6.410e-13	56.14	protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=...	[more]
DRP4C	6.440e-13	61.40	protein n=1 Tax=Symbiodinium natans TaxID=878477 R...	[more]
Hypothetical	1.200e-12	57.89	protein n=2 Tax=Polarella glacialis TaxID=89957 Re...	[more]
Hypothetical	1.340e-12	61.82	protein (Fragment) n=1 Tax=Amoebophrya sp. A25 Tax...	[more]
Shi	2.220e-12	61.40	protein n=1 Tax=Symbiodinium pilosum TaxID=2952 Re...	[more]
Hypothetical	2.290e-12	56.14	protein (Fragment) n=1 Tax=Alexandrium catenella T...	[more]
DRP4C	1.460e-11	59.65	protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A8...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75504	contig	H-canaliculatus_M_contigs75504:2..537 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7FYF7
PFAMs	Dynamin_M,Dynamin_N,GED
Model size	171
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14754,ko:K17065
KEGG Pathway	ko04139,ko04214,ko04217,ko04621,ko04668,ko05162,ko05164,ko05165,map04139,map04214,map04217,map04621,map04668,map05162,map05164,map05165
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0000266,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007005,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464,GO:0048285,GO:0071840
Exons	2
Evalue	8.15e-25
EggNOG OGs	COG0699@1\|root,KOG0446@2759\|Eukaryota
EC	3.6.5.5
Description	mitochondrial fission
Cds size	171
COG category	I
BRITE	ko00000,ko00001,ko01000,ko03029,ko04131,ko04147

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854092.3368146-CDS-H-canaliculatus_M_contigs75504:1..43	1696854092.3368146-CDS-H-canaliculatus_M_contigs75504:1..43	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75504 2..43 -
1696854092.358531-CDS-H-canaliculatus_M_contigs75504:408..537	1696854092.358531-CDS-H-canaliculatus_M_contigs75504:408..537	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75504 409..537 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75504.1.1	prot_H-canaliculatus_M_contigs75504.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75504 2..537 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75504:2..537-
coding sequence from alignment at H-canaliculatus_M_contigs75504:2..537-

protein sequence of mRNA_H-canaliculatus_M_contigs75504.1.1

>prot_H-canaliculatus_M_contigs75504.1.1 ID=prot_H-canaliculatus_M_contigs75504.1.1|Name=mRNA_H-canaliculatus_M_contigs75504.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=57bp
RPSGPTLTLIDLPGITHNSADSGQDVHTETVNLVKQYIENENMVILVVTP
AMDDFAN

mRNA from alignment at H-canaliculatus_M_contigs75504:2..537-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75504.1.1 ID=mRNA_H-canaliculatus_M_contigs75504.1.1|Name=mRNA_H-canaliculatus_M_contigs75504.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=536bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75504:2..537- (Hapterophycus canaliculatus Oshoro7m male)
CGTCCGTCTGGTCCGACACTGACGCTCATCGATCTACCGGGTATCACCCA
CAACTCGGCGGATAGCGGCCAGGACGTCCATACGGAAACAGTGAATCTCG
TGAAGCAGTACATCGAGAACGAAAATATGGTGCGTGTTTCTTCTTGTCGT
GTGGCCCGATACGGCCCAATCTATTGCTGTATATCCACTCCATCAGCACG
CTGAAATGTCGTTCTTTCTGAGTGAATTTGGGAGACACATTTGGTCGCGT
TTTCTCAACATCGCTCCTTGTTCCATGTACTGTAGATATTTTATGTTTTG
CCGCGGCCATTTTGCACGCAGAACGACAGTACAAGGTTCTCTGCTGCTCT
ATGAACCTGTATTTGGTGCCGGGTAGGCAGATGTGATGTTTTGATCATGT
TTCCCCACACTTGAGCGTATATCGTTCAATACGAAGTAGCAAGAACAACT
CCACGCCTGATCTTCTGCCCATTCGGAACGTTTCGACCTTTCAGGTGATC
CTGGTGGTCACTCCAGCGATGGACGACTTCGCCAAT

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75504:2..537-

>mRNA_H-canaliculatus_M_contigs75504.1.1 ID=mRNA_H-canaliculatus_M_contigs75504.1.1|Name=mRNA_H-canaliculatus_M_contigs75504.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=171bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75504:2..537- (Hapterophycus canaliculatus Oshoro7m male)
CGTCCGTCTGGTCCGACACTGACGCTCATCGATCTACCGGGTATCACCCA
CAACTCGGCGGATAGCGGCCAGGACGTCCATACGGAAACAGTGAATCTCG
TGAAGCAGTACATCGAGAACGAAAATATGGTGATCCTGGTGGTCACTCCA
GCGATGGACGACTTCGCCAAT