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Homology
BLAST of mRNA_H-canaliculatus_M_contigs755.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM98_9PHAE) HSP 1 Score: 369 bits (947), Expect = 3.690e-122 Identity = 233/436 (53.44%), Postives = 272/436 (62.39%), Query Frame = 1
Query: 1 KSIFMESGLTPALRELKDCRHTFASSS--EGDRLRGSRRGQGCITCNLAARVMADVEREQKAAENLLRQDKAEKELLWARARRNLLLMRHPTNWASSPFSEDGSRPERPKEAESDDSTAADPIDVDSAGIRERAREGGRPTGSVGDNRPKLAPGAMLTLSHLAAEAVRAFTEEVLGEEDPKEQAKKAMAIVMEATSEVAFANRRGRPRTGVLVTKLQAVARGWIARRRARVLVLRGGCRRELDIASGAWQYVWSYRA---GASAAAAVHRRGNPASGGAHPSSSAGDDGVGGAA----------AQGLCRSWYPPALLKNETLPSPRAAARRVEGEERKREARLILANSFLGIQRAQLKKREVRAVRLLALADVVKMVERATASLEDAAVGCFGIRSKPLCISVRVFHPRGGQPGDGARQAVASEIMAAWHRADNQ 1263
+S M GLTPALR+LKDC+HTF SS D R GQGC+TCN+ RH G RPERP+E E ++ T D GI GG+ GD+RPKL PGAMLTLS+ A AV+AF EEVL EE+P ++AKKA+AIV EAT+EVAFANRR PRTGVLV AV RGW+ARR ARVL+LRGGCRRELD+ASGAWQYVWS+RA GA A A R + A GG+ GG +GL R+WYPPALLKNE+LPSPRAAARRVEGE RKREARL LANS L QRA+L +R+ RA RLLAL +VVK+VERA ASLEDAA+ CFG S+PL ISV+V HPRGG+P DGAR+AV +EI++AWHR D Q
Sbjct: 2 QSALMAGGLTPALRQLKDCQHTFPSSQWDTRDSQGAPRHGQGCLTCNV----------------------------------------RH------------GPRPERPRELEPNNETGTGDFDAILNGIE----GGGQVERRGGDSRPKLVPGAMLTLSNTAVAAVKAFAEEVLAEENPAQRAKKALAIVKEATTEVAFANRRNHPRTGVLV----AVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPTATAGPGRASYAGGGS-----------GGXXYRSPVXXXXXXEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASLEDAALSCFGTDSEPLAISVKVLHPRGGEPWDGAREAVVTEIISAWHRIDTQ 366
BLAST of mRNA_H-canaliculatus_M_contigs755.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T7_ECTSI) HSP 1 Score: 382 bits (980), Expect = 3.700e-121 Identity = 235/430 (54.65%), Postives = 270/430 (62.79%), Query Frame = 1
Query: 1 KSIFMESGLTPALRELKDCRHTFASSS--EGDRLRGSRRGQGCITCNLAARVMADVEREQKAAENLLRQDKAEKELLWARARRNLLLMRHPTNWASSPFSEDGSRPERPKEAESDDSTAADPIDVDSAGIRERAREGGRPTGSVGDNRPKLAPGAMLTLSHLAAEAVRAFTEEVLGEEDPKEQAKKAMAIVMEATSEVAFANRRGRPRTGVLVTKLQAVARGWIARRRARVLVLRGGCRRELDIASGAWQYVWSYRAGA----SAAAAVHRRGNPASG---GAHPSSSAGDDGVGGAAAQGLCRSWYPPALLKNETLPSPRAAARRVEGEERKREARLILANSFLGIQRAQLKKREVRAVRLLALADVVKMVERATASLEDAAVGCFGIRSKPLCISVRVFHPRGGQPGDGARQAVASEIMAAWHRADNQ 1263
+S M GLTPALR+LKDCRHTF SS D R GQGC+TCN G RPERP E E ++ T D I EGGR GD+RPKL PGAMLT S+ A AV+AF EEVL EEDP +A KA AIV EAT+EV+FANRR PRT VLVT+LQAV RGW+ARR ARVL+LRGGCRRELD+ASGAWQYVWS+RA AAA R + A G G + S + G DG +GL R+WYPPALLKNE+LPSPRAAARRVEGE RKREARL LANS L QRA+L +R+ RA RLLAL +VVK+VERA ASLE+AA+ CFG S+PL ISV+V HPRGG+PGDGAR+AV +EIM+AWHR D Q
Sbjct: 2 QSALMAGGLTPALRQLKDCRHTFPSSKWDTRDSQGAPRHGQGCLTCN-------------------------------------------------------GPRPERPTELEPNNETGTG----DFGAILNGIEEGGRVERCGGDSRPKLVPGAMLTFSNTAVAAVKAFAEEVLAEEDPPRRATKAAAIVKEATTEVSFANRRNHPRTEVLVTRLQAVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPGAAATAPGRASYAGGIGGGGYRSPACGGDG-----GEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASLEEAALTCFGTGSEPLAISVKVLHPRGGEPGDGAREAVVTEIMSAWHRIDAQ 367
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1290 |
| Hectar predicted targeting category | other localisation |
| Exons | 9 |
| Cds size | 1278 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696854092.0912406-CDS-H-canaliculatus_M_contigs755:5166..5311 | 1696854092.0912406-CDS-H-canaliculatus_M_contigs755:5166..5311 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 5167..5311 - |
| 1696854092.1055825-CDS-H-canaliculatus_M_contigs755:5676..5800 | 1696854092.1055825-CDS-H-canaliculatus_M_contigs755:5676..5800 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 5677..5800 - |
| 1696854092.1172738-CDS-H-canaliculatus_M_contigs755:6581..6969 | 1696854092.1172738-CDS-H-canaliculatus_M_contigs755:6581..6969 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 6582..6969 - |
| 1696854092.127991-CDS-H-canaliculatus_M_contigs755:7443..7563 | 1696854092.127991-CDS-H-canaliculatus_M_contigs755:7443..7563 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 7444..7563 - |
| 1696854092.1384497-CDS-H-canaliculatus_M_contigs755:7883..8008 | 1696854092.1384497-CDS-H-canaliculatus_M_contigs755:7883..8008 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 7884..8008 - |
| 1696854092.149156-CDS-H-canaliculatus_M_contigs755:8080..8168 | 1696854092.149156-CDS-H-canaliculatus_M_contigs755:8080..8168 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 8081..8168 - |
| 1696854092.1612275-CDS-H-canaliculatus_M_contigs755:8446..8456 | 1696854092.1612275-CDS-H-canaliculatus_M_contigs755:8446..8456 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 8447..8456 - |
| 1696854092.1731575-CDS-H-canaliculatus_M_contigs755:8567..8722 | 1696854092.1731575-CDS-H-canaliculatus_M_contigs755:8567..8722 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 8568..8722 - |
| 1696854092.1841648-CDS-H-canaliculatus_M_contigs755:9004..9127 | 1696854092.1841648-CDS-H-canaliculatus_M_contigs755:9004..9127 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs755 9005..9127 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696854092.1956909-UTR-H-canaliculatus_M_contigs755:9127..9139 | 1696854092.1956909-UTR-H-canaliculatus_M_contigs755:9127..9139 | Hapterophycus canaliculatus Oshoro7m male | UTR | H-canaliculatus_M_contigs755 9128..9139 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs755.2.1 >prot_H-canaliculatus_M_contigs755.2.1 ID=prot_H-canaliculatus_M_contigs755.2.1|Name=mRNA_H-canaliculatus_M_contigs755.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=426bp
MESGLTPALRELKDCRHTFASSSEGDRLRGSRRGQGCITCNLAARVMADV EREQKAAENLLRQDKAEKELLWARARRNLLLMRHPTNWASSPFSEDGSRP ERPKEAESDDSTAADPIDVDSAGIRERAREGGRPTGSVGDNRPKLAPGAM LTLSHLAAEAVRAFTEEVLGEEDPKEQAKKAMAIVMEATSEVAFANRRGR PRTGVLVTKLQAVARGWIARRRARVLVLRGGCRRELDIASGAWQYVWSYR AGASAAAAVHRRGNPASGGAHPSSSAGDDGVGGAAAQGLCRSWYPPALLK NETLPSPRAAARRVEGEERKREARLILANSFLGIQRAQLKKREVRAVRLL ALADVVKMVERATASLEDAAVGCFGIRSKPLCISVRVFHPRGGQPGDGAR QAVASEIMAAWHRADNQASWLRYLL* back to topmRNA from alignment at H-canaliculatus_M_contigs755:5167..9139- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_M_contigs755.2.1 ID=mRNA_H-canaliculatus_M_contigs755.2.1|Name=mRNA_H-canaliculatus_M_contigs755.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3973bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs755:5167..9139- (Hapterophycus canaliculatus Oshoro7m male) AAATCGATCTTCATGGAAAGCGGGCTAACCCCAGCGCTCCGTGAGCTCAA
GGACTGCCGGCACACCTTTGCTTCGAGTAGTGAGGGAGATCGCCTCAGAG
GATCCCGGCGTGGCCAAGGATGCATCACCTGCAACGTGGGTTGCTGGAGA
AGATATATGCGCCCTCCGCGCTACCCCCCCAAGCGCACGTCGAATGGATG
GTCACCTAAAGGCAACCAGGACAATGGCAATCCATTCCCAAGGCGTGTTG
TATCATTGTCGCCATGCGTCGTGTGTTCGGCTTTGCATTTACCCTTCATG
TATACGACGGAGGACGTATTGCTTGTAGTAACAACGGTCGATTGCACCAC
GGTTCTGTGATTCCCACAACCTTCCCCGCGTCTGCCATTTTCCGCATACT
GTATCACAACTTCAAAGCTTGCGGCGAGGGTAATGGCGGACGTTGAAAGG
GAGCAAAAGGCAGCTGAGAATCTCCTGCGGCAGGATAAGGCCGAGAAAGA
ACTGCTATGGGCCCGAGCACGTCGCAATCTGCTCCTCATGAGGCATCCGA
CGAACTGGGCGTCTTCCCCATTGTTGCAGGCGAGGAAACACGCAAATTAA
TCGGTTACCTAATCTGCAATGTAGCGTTCTTGCCTTTTCGGGTACTGTAC
TTTAAAAACTAGAAGTACGGGTGGCGATTTGAGTTCTGAGGATGTTTACT
GGGTCTGCGGCCCCCTTGACTCTAAGCCTGTAACGATACTTTCTTCATCA
TCGTCCATGTGGCCCAAAACTTGCTGTCACTCTCGATCCTTCGTGCGACC
CGTACAACAACGACATCGGTCAGAGATAAAGCCCCTTGCCTACGCCGATG
CCCCAAGATTCTCCTCCCTGCAACAAACATTGACCACACAGTAAGGAAAC
GCGGAAAACACAAGACATTTAAGATTTGAGACAAAGGACGCGGATTTCCT
GCCATATTGACCCGCATGCAGGGATCCCGACCAGAAAGACCCAAGGAGGC
AGAATCAGACGATTCGACGGCCGCCGATCCGATCGATGTCGACTCAGCGG
GCATTCGCGGTGCGGGTGAGAACGGCACCGTGGGTAGGAAAGCAGAGCAT
CATGGGCATGACCCCCGCGCCCAAACAAAAGAACGCGCTCGTGAAGGGGG
GCGTCCAACAGGTTCTGTGGGAGACAATCGTCCGAAGCTTGCCCCGGGCG
CAATGCTGACCCTTTCGCACCTCGCGGCGGAGGCAGTAAGGGCGTTCACC
GAAGAGGTGAGGCAGTCGAGTTCCGTGCTTGCTCAAACACCTTTGGTGTC
AGCACCACGGTGATATCTGCTTCGAGCAGCAGTGCCGTTGCTCGAAAATT
TCCGTGAGACGGACGGGTGATGGCTGGCATCGCAGGACGGTGGAGCCATA
AAAACACAGTCATTGGTTCAAGCTCTCGAGCAGCACCGGGTGGGGTGGCC
GCTATCCTGCCTGATCCCGTCGGCGTGATGCGATTCGATCATTCCTCGAA
GACTCACTCCCCCTAGCGTGGTCCATCCCTATGGACAACTTTCTTTGGTT
CTGATAAACGTTCAACGTGCCTCCAGGTGCTCGGCGAAGAAGACCCTAAA
GAACAGGCGAAGAAGGCGATGGCCATAGTCATGGAAGCGACGTCGGAGGT
GGCCTTCGCCAACCGCCGAGGTCGTCCTCGCACCGGCGTTCTTGTGGTGA
GCGAGAACCGGGTTCTCCCGGGCGTTTCTCGAAAAAATGCTCGTTCGCTA
TCCCACGAAACAAGTACTCGCTTTTGAACACGGTGACGGTGTGCGAAAAC
CAGTCCAACGGAAAAGCCGCTGAAAGCGCCGGTAACAATTGTTTGTCAGA
TTGCACCTCAGAGTCGCTGGCGCCCGGTCCGTGGGGACTCCCACGCAACA
GGTTCCAAGACCTCAGCTACGAAAGCACGGGAGAAAACGGCACACAGCTT
CTTCGAGCTAAGCGTCAGAATCCACACCTCCAACGCTTGTGATATATTCG
TGATTGAGGCTCCGTAAAAAATACCACTCAACGCGTCATTTCCTGCCTAT
AACTCTCGTTATCTTCTCCCCTGCGCAACGCTACACCCGACGTTTTCTTT
TGCTCCAGCCCCTCCCCACTCCGTTTGCCCCGTTTCATCCCCTTCCACCG
TGTCCCGCCCGGCTCGTAAGACCAAGCTACAGGCCGTCGCGAGAGGATGG
ATAGCGCGGCGTCGAGCCCGGGTCCTCGTTCTTAGAGGCGGCTGCCGTCG
TGAGCTCGACATCGCGTCGGGAGCTTGGCAATATGTGTGGAGCTACCGTG
CGGGTGCTTCTGCCGCCGCCGCCGTTCATCGGCGAGGGAACCCTGCAAGT
GGCGGAGCGCACCCTTCGTCGTCTGCGGGGGACGACGGAGTGGGTGGGGC
GGCGGCGCAGGGCCTGTGCCGTTCGTGGTACCCCCCCGCTCTGCTGAAGA
ACGAGACTCTGCCAAGCCCGCGTGCAGCCGCGAGGAGGGTGGAAGGGGAG
GAGAGGAAGAGGGAAGCCCGCCTGATACTCGCCAACTCTTTTCTCGGCAT
CCAGCGAGGTCAGGCTCTCGTTCCGTTCGGTCTGCAACCTTTTGAGTCGT
GTGGCGAGAAGCATTACACGACAAGTGGGAGGGGATGGCCCGGGGTTGTT
GCACGAGGAAGCCGCTGGGACGATTGGCCGCCGCGTTGAGCTGGCCGATA
TCACGAGTCATAGGCTATAGGCTCGTCACAGCAGCGTTCGGGGAAAATGC
TTCCATTCTTGCTTCTTCCGGAAAAAGTGTGCCCCCCGTCAAGGATACAT
GTAGACCAACATATCCAGGAGGTTTGTCGTCGGGTCCGGAGGTGCGCTAG
GAAAGTCCCGCATCTTACGCAGGATCTCGTCCTGAGCGTGCTCACATTCA
AAAGCGTGTTTGATGCCTTCGCGTCCGTGTCTTCAATCGAGATCCAAGCG
CGCAGAGGGCCGCTGGCGTACCCCATCGCTTGCGAGTAAACGAACCCTCT
GCGGACACATTTATTTTCGTTTCAGCAATTTTTCGCAGGCGTGATGCGCG
GGGCTGGCTACCCCCCGCGCTGAGTGAGAGTTACCTACCCACTCTTCTGT
CACGATACCGTCATCACTCCCTGTCAGAACTACACGTTTACCACTGAGTT
GCAGTCAGCCACTGAGTTACAGTCAGCTGCTGACTGCAACTCAGTGGTAA
ACGTGTGGTTCTGACAAAAGTAACATCCGGGTAACTCAGTGGTAAACGTG
TGGTTCTGACACTCCCCGAGCGACACGTCATTTCCAGCGTTATCTAACCA
ACCCAGTGCGTGGAATTTGCGATTTGTTTTTGTTGCCAGCCCAGCTCAAG
AAGCGTGAGGTTCGTGCCGTGCGGTTGCTCGCGCTGGCCGATGTCGTGAA
GATGGTCGAGCGGGCAACGGCGTCCCTTGAAGATGCGGCAGTCGGTTGCT
TCGGAATCAGGAGGTATTGGTGCCTCGGGGGGAGAAGTTGTGGGGACGTT
TTTTCTTCCTGTCAACAAATGCTTAGTTGGTTGATACCAGCCAAACACGT
CCTCTTTGTGTAGAGGCGATAACGTGGTCAGAGGGGTGAAACGATGTTGA
GAAGAGCAAGAAGACATGAAGTGACGAATACATCGACAGACATCGCTGCG
GCTTGTTGGTGCGCGGCTCCTCGCTCGTGGTGGCTAGCGGTCTCAAGGGC
AGTTGCATCTCCCTCGCTCAATCCGAAAACCCTCAACTCGACCACCTCCA
ATCCCTGCCCCCCGCCCTGTACTTTCCCGGTGGTTGCTTCCTTGTCCACG
GCAATCACGGGGTGGACGAAAAGCACAGTAAGCCCCTTTGCATTTCCGTC
CGAGTTTTTCACCCCCGAGGAGGGCAACCAGGCGATGGAGCGCGGCAAGC
GGTGGCGTCTGAGATTATGGCTGCATGGCATCGTGCCGATAACCAGGCAA
GTTGGCTGCGCTACCTGTTGTAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_M_contigs755:5167..9139- >mRNA_H-canaliculatus_M_contigs755.2.1 ID=mRNA_H-canaliculatus_M_contigs755.2.1|Name=mRNA_H-canaliculatus_M_contigs755.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1278bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs755:5167..9139- (Hapterophycus canaliculatus Oshoro7m male) ATGGAAAGCGGGCTAACCCCAGCGCTCCGTGAGCTCAAGGACTGCCGGCA CACCTTTGCTTCGAGTAGTGAGGGAGATCGCCTCAGAGGATCCCGGCGTG GCCAAGGATGCATCACCTGCAACCTTGCGGCGAGGGTAATGGCGGACGTT GAAAGGGAGCAAAAGGCAGCTGAGAATCTCCTGCGGCAGGATAAGGCCGA GAAAGAACTGCTATGGGCCCGAGCACGTCGCAATCTGCTCCTCATGAGGC ATCCGACGAACTGGGCGTCTTCCCCATTTTCTGAGGATGGATCCCGACCA GAAAGACCCAAGGAGGCAGAATCAGACGATTCGACGGCCGCCGATCCGAT CGATGTCGACTCAGCGGGCATTCGCGAACGCGCTCGTGAAGGGGGGCGTC CAACAGGTTCTGTGGGAGACAATCGTCCGAAGCTTGCCCCGGGCGCAATG CTGACCCTTTCGCACCTCGCGGCGGAGGCAGTAAGGGCGTTCACCGAAGA GGTGCTCGGCGAAGAAGACCCTAAAGAACAGGCGAAGAAGGCGATGGCCA TAGTCATGGAAGCGACGTCGGAGGTGGCCTTCGCCAACCGCCGAGGTCGT CCTCGCACCGGCGTTCTTGTGACCAAGCTACAGGCCGTCGCGAGAGGATG GATAGCGCGGCGTCGAGCCCGGGTCCTCGTTCTTAGAGGCGGCTGCCGTC GTGAGCTCGACATCGCGTCGGGAGCTTGGCAATATGTGTGGAGCTACCGT GCGGGTGCTTCTGCCGCCGCCGCCGTTCATCGGCGAGGGAACCCTGCAAG TGGCGGAGCGCACCCTTCGTCGTCTGCGGGGGACGACGGAGTGGGTGGGG CGGCGGCGCAGGGCCTGTGCCGTTCGTGGTACCCCCCCGCTCTGCTGAAG AACGAGACTCTGCCAAGCCCGCGTGCAGCCGCGAGGAGGGTGGAAGGGGA GGAGAGGAAGAGGGAAGCCCGCCTGATACTCGCCAACTCTTTTCTCGGCA TCCAGCGAGCCCAGCTCAAGAAGCGTGAGGTTCGTGCCGTGCGGTTGCTC GCGCTGGCCGATGTCGTGAAGATGGTCGAGCGGGCAACGGCGTCCCTTGA AGATGCGGCAGTCGGTTGCTTCGGAATCAGGAGTAAGCCCCTTTGCATTT CCGTCCGAGTTTTTCACCCCCGAGGAGGGCAACCAGGCGATGGAGCGCGG CAAGCGGTGGCGTCTGAGATTATGGCTGCATGGCATCGTGCCGATAACCA GGCAAGTTGGCTGCGCTACCTGTTGTAG back to top
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