mRNA_H-canaliculatus_M_contigs755.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs755.1.1
Unique NamemRNA_H-canaliculatus_M_contigs755.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs755.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN18_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 1.270e-111
Identity = 259/558 (46.42%), Postives = 323/558 (57.89%), Query Frame = 1 
Query:    1 VRERKEAARLRAEASSGQGKTRRQNSPSRGG--SGGEKPGATSPERREKRGGKRD--VSVPTTNDNLAEFEKRLLQDSLHEDASAAVASILQRKKVLIAIHEASRVGRNKDAWEKTGTSPFGIGIQVLPPWASASHRFIALAHRGSLVAVSQASPFVFWETL--------------------------------------------------ANRANLGRVLEAILGPFLENADLLEAMFVGGQLSSAAFSAVSTDTNARRFTT---STA-----------GREVGNSEVETPTATGTSQ----NSEGNECGSAAGDGLWGYCSSLSCKGCWKVDAWTAAQRDPSVELGFDSVAFDIFVTPEDYRQGREGAEAPLSQPDY---------------------SRVVVSNVVPFRLADGLPRELGPLLFEETADASLLGG-GAEYRPPSRGTRNGREKHP--AGDEPEGEDSVTRE-EQEGEEDEEDLWIDKEDPRGCGPMLSHVRRECRSVGGVVEVRLRAKSIDSRQLARAGLPQDMSALVVDVNPEVT---AAGNSK 1374
            VRE++EAARLRAE ++ +GK+ +  SP+RG   S    P + S E R K  G+R+  +SVPTTN+NLA FE+RLLQDSLHEDAS AVAS+LQRK+VL  IHEASR+GRN+ AW K  +SPFG+G  V PPWA ASHRFIAL HRGSLVAVSQASPFVFWE L                                                  A R    +++  ILGPFLEN DLL+A     Q + A+  A +  T+A R TT   STA           G +  +S V     TG  Q    N EG+   +AA  G+WGY SSLS KGCWK+DA  A +RD S++LGFDSVAFD+FV P + +  ++G E P + P+                      +R VV+N VPFRLADGLPRELGPLLF++T+DASLL G  AEY P SR  +  R +HP     +PE + S   E E+E EE+ E  W  K+DPR  G +LSH  R        VEVR+R +++ + QLARAGLP D+  LVVD    VT    AG+SK
Sbjct:    6 VREQEEAARLRAERTNDKGKSPK-TSPNRGVGVSARRTPRSGSREGRGKSAGRREAKLSVPTTNENLAAFEQRLLQDSLHEDASEAVASLLQRKRVLGCIHEASRLGRNEKAWGKQSSSPFGLG--VFPPWALASHRFIALVHRGSLVAVSQASPFVFWENLVSECETSDYCIVHAQTHRRKRFNVLVTEYLNISSLWASPLIIVRKNINMKAERRKTNQLIADILGPFLENGDLLKAALEDEQGARASVPA-NRATSASRATTNAVSTAREIPGDGAGGDGEQSPSSSVAEAGDTGVRQIGRENEEGSAAAAAADGGMWGYRSSLSSKGCWKIDARAAGRRDSSLKLGFDSVAFDLFVLPHE-KGDKKGGEEPAAPPERKQRHATRVNGHEEAKSSSHRATRAVVTNAVPFRLADGLPRELGPLLFDDTSDASLLAGDAAEYHPQSRVAKR-RPEHPLVTVSDPELDGSELEEVEEEAEEEHEYGWESKKDPRSAGQILSHTHRGSGPSEAAVEVRIRGETLSADQLARAGLPHDLFGLVVDERFNVTNAATAGDSK 557
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs755.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T7_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 1.870e-89
Identity = 232/519 (44.70%), Postives = 291/519 (56.07%), Query Frame = 1 
Query:    1 VRERKEAARLRAEASSGQGKTRRQNSPSRGG--SGGEKPGATSPERREKRGGKRD--VSVPTTNDNLAEFEKRLLQDSLHEDASAAVASILQRKKVLIAIHEASRVGRNKDAWEKTGT-SPFGIGIQVLPPWASASHRFIALAHRGSLVAVSQASPFVFWETLANRANLGRVLEAILGPFLENADLLEAMFV---GGQLSSAAFSAVSTDTNARRFTTSTA-----------GREVGNSEVETPTATGTSQNSEGNECGSA-------AGDGLWGYCSSLSCKGCWKVDAWTAAQRDPSVELGFDSVAFDIFVTPEDYRQGREGAEAP----------------------LSQPDYSRVVVSNVVPFRLADGLPRELGPLLFEETADASLLGG-GAEYRPPSRGTRNGREKHP---------AGDEPEGEDSVTREEQEGEEDEEDLWIDKEDPRGCGPMLSHVRRECRSVGGVVEVRLRAKSIDSRQLARAGLPQDMSALVVDVNPEVT---AAGNSK 1374
            VRE++EAARLRAE ++ +GK+ +  SP+RGG  S    P + S E R K  G+R+  +SVPTTN+NLA FE+               A +L R++V        R G      E +    P G  IQV PPWA ASHRFIAL HRGSLVAVSQASPFVFWE LA+R    +++  ILGPFLEN DLL+A F    G + S  A  A S   +      STA           G +  +S V     TG  Q    NE GS        A  G+WGY SSLS KGCWK+DA   A+RD S++LGFDSVAFD+FV P++ + G++G + P                       S P  +R VV+N VPFRLADGLPRELGPLLFE+T+DASLL G  AE  P SRG +  + +HP          G  PE  +  T EE+EG E     W  K+DPR  G +LSH RR        VEVR+R +++ + QLARAGLP D+ +LVVD   +VT    AG+SK
Sbjct:  368 VREQEEAARLRAERTNDKGKSPK-TSPNRGGGVSARRTPRSGSREGRGKSTGRREAKLSVPTTNENLAAFEQ-------------IAARLLARRRV--------RGGGLSSPEEASARLHPRGFKIQVFPPWALASHRFIALVHRGSLVAVSQASPFVFWENLADRKKTNQLIADILGPFLENPDLLKAAFADEPGERASVPATKATSAGRSTTNNAVSTARETPGDGAGGDGEQSTSSSVAEAGDTGVRQIGRENEEGSXXXXXXXXADGGMWGYRSSLSSKGCWKIDARAVARRDSSLKLGFDSVAFDLFVLPDEKKGGKKGGQEPPAAPSVGKQRHATRVNDHEEDESSSPRATRAVVTNAVPFRLADGLPRELGPLLFEDTSDASLLAGDAAEDHPQSRGAKR-KPEHPRVTVSDPELVGSRPEEAEEET-EEEEGYE-----WERKKDPRSAGKILSHTRRGSGPSEAAVEVRIRGETLGADQLARAGLPHDLFSLVVDERFKVTNAATAGDSK 857
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs755.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.270e-11146.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.870e-8944.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs755contigH-canaliculatus_M_contigs755:1665..4693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1374
Hectar predicted targeting categoryother localisation
Exons4
Cds size1374
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854092.0154247-CDS-H-canaliculatus_M_contigs755:1664..25641696854092.0154247-CDS-H-canaliculatus_M_contigs755:1664..2564Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs755 1665..2564 -
1696854092.027064-CDS-H-canaliculatus_M_contigs755:2998..31121696854092.027064-CDS-H-canaliculatus_M_contigs755:2998..3112Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs755 2999..3112 -
1696854092.0380702-CDS-H-canaliculatus_M_contigs755:3893..40491696854092.0380702-CDS-H-canaliculatus_M_contigs755:3893..4049Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs755 3894..4049 -
1696854092.051971-CDS-H-canaliculatus_M_contigs755:4489..46931696854092.051971-CDS-H-canaliculatus_M_contigs755:4489..4693Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs755 4490..4693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs755.1.1prot_H-canaliculatus_M_contigs755.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs755 1665..4693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs755.1.1

>prot_H-canaliculatus_M_contigs755.1.1 ID=prot_H-canaliculatus_M_contigs755.1.1|Name=mRNA_H-canaliculatus_M_contigs755.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=458bp
VRERKEAARLRAEASSGQGKTRRQNSPSRGGSGGEKPGATSPERREKRGG
KRDVSVPTTNDNLAEFEKRLLQDSLHEDASAAVASILQRKKVLIAIHEAS
RVGRNKDAWEKTGTSPFGIGIQVLPPWASASHRFIALAHRGSLVAVSQAS
PFVFWETLANRANLGRVLEAILGPFLENADLLEAMFVGGQLSSAAFSAVS
TDTNARRFTTSTAGREVGNSEVETPTATGTSQNSEGNECGSAAGDGLWGY
CSSLSCKGCWKVDAWTAAQRDPSVELGFDSVAFDIFVTPEDYRQGREGAE
APLSQPDYSRVVVSNVVPFRLADGLPRELGPLLFEETADASLLGGGAEYR
PPSRGTRNGREKHPAGDEPEGEDSVTREEQEGEEDEEDLWIDKEDPRGCG
PMLSHVRRECRSVGGVVEVRLRAKSIDSRQLARAGLPQDMSALVVDVNPE
VTAAGNSK
back to top

mRNA from alignment at H-canaliculatus_M_contigs755:1665..4693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs755.1.1 ID=mRNA_H-canaliculatus_M_contigs755.1.1|Name=mRNA_H-canaliculatus_M_contigs755.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3029bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs755:1665..4693- (Hapterophycus canaliculatus Oshoro7m male)
GTACGCGAACGAAAAGAGGCGGCTCGCTTAAGAGCAGAGGCTTCGAGCGG
GCAAGGCAAAACTCGAAGACAAAACTCGCCGAGCAGAGGGGGGAGTGGAG
GCGAGAAGCCGGGGGCTACCAGCCCAGAGCGCCGAGAGAAGAGGGGAGGC
AAGAGAGACGTTTCGGTTCCTACGACCAACGACAACCTCGCAGAGTTCGA
GAAGGTGACCTCACTTTGGGACGAGGCGCAGGGAGAACACCGATGCATCG
GGTGGTGTGAGGAGTCCTGGTCGGATCAAACCAGTCAACGCATGTTGGAA
AGCCGCTCCTCGCACTGAAAAGGCCGTGTACGTGGGTGACGCCGCTTTCG
TTGTTAGCTTTCGTAGCTTGCGTTGGTGGGACCCTTTACCGCAAGCTAGC
CTTAGAACGGTCCGCTTGCAACAGGACGAGCACCCACTTCGTAGACATTC
CGAGATACCACCAAAGGTGGAGTTGGCTATAAAATGTAGAATGTTTGCAC
CTGGGATATCGCATACGGCGTTCACCGTTGCCCCCGCCCCGTAGCTCCAG
CCACGCGACGAAAAATGGGCCCGAGCACCACCCCTCGGCCTGCATCCCCA
AATCTCGCTGCGACTCGCCAACGTGGGCCGTACAACGCTTTCAGAGATTA
CTGCAAGATTCCCTCCATGAGGACGCGTCAGCGGCGGTGGCATCTATTCT
GCAGAGAAAAAAGGTCCTCATCGCGATCCACGAGGCGTCGCGAGTTGGTC
GGAACAAGGATGCTTGGGAGAAAACGGGCACGTCACCTTTTGGCATAGGG
GTGAGCCTTGAGTCAGGATCGCTTGCTATCGGCTCCCGCAACATGACCCA
GGATTTGGCCCGGTAACAAGACGTCCTGGACTCCGCTCGGTACAGGTTGT
GACATCCGTCCTCTACGGTTGCTACGGTGTCTCAAGCAAACCTAATCTAA
TTTTTTTGGCTGGAACCTTCAGGGGTTCGAAAACTCTAGGTTACGGATCT
CTTAAGGATTGCTTCTCCTGATTGGTAAGTCGTAATACCGTCATATCCCC
AGTACCGTGGCCACATCCCACAACTGCTTTTTTGGGAGAATCCTAGACCT
TTGTCTACAAGTATGCTTTACAAGAGCGCGACTTCGACGCGATGCACATC
TGAGAGCCCGTCGGTGTTTTGTGTTATTGGCTCTCCCTCCCCTGGATACT
TTTCAACGTGCCAACTTCATCCATGTGCTTCATGTTTTGTAGTACAACCT
GCACATCTTTGCCCGTACTGAAGCGATGGATCAGAACGAGGGAAACCCGG
TCCTGCCGAGGCTCTCTTCGTAGCAAGGTCATATACCCAATCCACCAAAC
AGTCTCAAATGTTGGTTCGTTTGCAGTAAGCCTCGAGGACCAACCGCGTC
CGTGACATTTTCACGTCATTGCATGGAACGATCCACATTACTTGCCAAAC
CTCTCAAGACTTGCTGAGAGCGTTCGATCGGGGAAATAACTATTTTTTAA
GTGTTCATAGTTTCTTTTTCTTATCCCCGGGCGTTATCTCTGTCGCGCTG
TTTCAATCCCTCCGTCGACACGAGGAAACAGATTCAGGTCTTGCCTCCGT
GGGCGAGTGCTTCCCACAGGTTCATAGCTCTCGCGCACCGAGGAAGCCTC
GTGGCGGTTTCGCAGGCCTCACCTTTCGTATTCTGGGAAACATTGGTGAG
CAAGCGAAAGGGGCTTCGCCGGCAAACGTTCGTCGCATCTCTTGGTTGCC
TTGTCGGCGTGCCACAACGATAGTGGCATGGATGTGGTTTGATGGGCAAA
CCGTGCGGCCGCCCCTCGTTTCTTGGCTTCCCTCGGAGACTCAAGCCTCC
ACGAGACGGGGGGAAGTAGAAACACGTAGTTAGGACTTTGCCCTGTGTGA
ACATCACTCACTGACGGTGGACCACATCCGAGTTCGAGCATGCATGTGCG
GCACCCAGGACTAGATTACACATCACGTCATGTGTCACGCTTCTAGTTTT
CCGGTTGCAAATTGCTCTAGATAGCGTCCTAGAAAACCGCCGGCAAATCC
GCTTCCGTCCTAAAAGAGAATGACGCCACATCCATGCGAATGCGTACTTG
CGCAATCGGATAAACCAACCTCTTCGAAGGCGAACAGGGCAAACTTGGGC
CGGGTCCTCGAGGCAATCCTCGGACCGTTCCTGGAGAATGCCGACCTCTT
AGAGGCGATGTTTGTCGGCGGCCAGCTCTCAAGCGCCGCCTTTTCTGCCG
TCAGTACCGACACCAACGCCCGTCGATTCACCACGAGCACCGCTGGTAGA
GAGGTTGGCAACTCAGAGGTTGAGACACCGACGGCCACAGGAACGAGTCA
AAATAGCGAAGGAAACGAGTGCGGGTCGGCAGCGGGCGACGGCCTGTGGG
GCTACTGTTCGAGCCTCTCGTGCAAGGGGTGCTGGAAAGTGGACGCGTGG
ACCGCCGCTCAGAGGGATCCTTCGGTGGAGCTGGGATTCGACTCAGTAGC
GTTCGACATTTTTGTCACACCGGAAGACTACCGCCAGGGGCGTGAGGGGG
CCGAGGCTCCATTGTCGCAGCCCGACTACTCGCGCGTGGTGGTTTCCAAC
GTTGTTCCCTTCCGCCTCGCGGACGGGCTACCGCGAGAGCTCGGCCCACT
TCTGTTCGAAGAAACCGCAGATGCCTCTCTCTTGGGCGGTGGCGCCGAGT
ACCGCCCTCCCTCGCGAGGAACTAGAAACGGACGTGAAAAACACCCGGCA
GGGGATGAGCCTGAGGGGGAAGACTCGGTAACGAGAGAGGAGCAGGAAGG
GGAGGAAGACGAGGAAGATTTGTGGATTGATAAGGAGGATCCTCGTGGCT
GCGGGCCGATGTTGAGTCACGTTCGTCGTGAGTGTCGGTCCGTCGGAGGG
GTTGTAGAGGTCAGACTCCGAGCAAAATCCATCGACAGCAGGCAGCTAGC
GAGGGCAGGGCTGCCTCAGGATATGTCTGCATTGGTAGTTGACGTTAATC
CCGAGGTCACTGCTGCGGGCAATTCGAAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs755:1665..4693-

>mRNA_H-canaliculatus_M_contigs755.1.1 ID=mRNA_H-canaliculatus_M_contigs755.1.1|Name=mRNA_H-canaliculatus_M_contigs755.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1374bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs755:1665..4693- (Hapterophycus canaliculatus Oshoro7m male)
GTACGCGAACGAAAAGAGGCGGCTCGCTTAAGAGCAGAGGCTTCGAGCGG
GCAAGGCAAAACTCGAAGACAAAACTCGCCGAGCAGAGGGGGGAGTGGAG
GCGAGAAGCCGGGGGCTACCAGCCCAGAGCGCCGAGAGAAGAGGGGAGGC
AAGAGAGACGTTTCGGTTCCTACGACCAACGACAACCTCGCAGAGTTCGA
GAAGAGATTACTGCAAGATTCCCTCCATGAGGACGCGTCAGCGGCGGTGG
CATCTATTCTGCAGAGAAAAAAGGTCCTCATCGCGATCCACGAGGCGTCG
CGAGTTGGTCGGAACAAGGATGCTTGGGAGAAAACGGGCACGTCACCTTT
TGGCATAGGGATTCAGGTCTTGCCTCCGTGGGCGAGTGCTTCCCACAGGT
TCATAGCTCTCGCGCACCGAGGAAGCCTCGTGGCGGTTTCGCAGGCCTCA
CCTTTCGTATTCTGGGAAACATTGGCGAACAGGGCAAACTTGGGCCGGGT
CCTCGAGGCAATCCTCGGACCGTTCCTGGAGAATGCCGACCTCTTAGAGG
CGATGTTTGTCGGCGGCCAGCTCTCAAGCGCCGCCTTTTCTGCCGTCAGT
ACCGACACCAACGCCCGTCGATTCACCACGAGCACCGCTGGTAGAGAGGT
TGGCAACTCAGAGGTTGAGACACCGACGGCCACAGGAACGAGTCAAAATA
GCGAAGGAAACGAGTGCGGGTCGGCAGCGGGCGACGGCCTGTGGGGCTAC
TGTTCGAGCCTCTCGTGCAAGGGGTGCTGGAAAGTGGACGCGTGGACCGC
CGCTCAGAGGGATCCTTCGGTGGAGCTGGGATTCGACTCAGTAGCGTTCG
ACATTTTTGTCACACCGGAAGACTACCGCCAGGGGCGTGAGGGGGCCGAG
GCTCCATTGTCGCAGCCCGACTACTCGCGCGTGGTGGTTTCCAACGTTGT
TCCCTTCCGCCTCGCGGACGGGCTACCGCGAGAGCTCGGCCCACTTCTGT
TCGAAGAAACCGCAGATGCCTCTCTCTTGGGCGGTGGCGCCGAGTACCGC
CCTCCCTCGCGAGGAACTAGAAACGGACGTGAAAAACACCCGGCAGGGGA
TGAGCCTGAGGGGGAAGACTCGGTAACGAGAGAGGAGCAGGAAGGGGAGG
AAGACGAGGAAGATTTGTGGATTGATAAGGAGGATCCTCGTGGCTGCGGG
CCGATGTTGAGTCACGTTCGTCGTGAGTGTCGGTCCGTCGGAGGGGTTGT
AGAGGTCAGACTCCGAGCAAAATCCATCGACAGCAGGCAGCTAGCGAGGG
CAGGGCTGCCTCAGGATATGTCTGCATTGGTAGTTGACGTTAATCCCGAG
GTCACTGCTGCGGGCAATTCGAAG
back to top