mRNA_H-canaliculatus_M_contigs7549.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7549.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7549.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7549.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ7_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.370e-49
Identity = 133/277 (48.01%), Postives = 164/277 (59.21%), Query Frame = 1 
Query:    1 QISCNWRVIVQWPQRTNGPYISKVHLRHDTPFGEEGQNGQEHPPPRAFDNELSKEEIQRQEDKIKDLVEAGMRTTDLHKFLQRDGKRLGEQGKQKVRNIRRRHQLESAP---SGLASPIPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXSXXXXXXXXXDNGHFPASTAATPTQSSSRSACTLGSSNGPHSVIGKLLASNGGAPSXXXXXXXXXXXXXXXX-VAFAKELASTASEITSREAMNRVIAHARVAADTAIRVEVQCQGQ 819
            +I+CNW+V+ QWPQRT GPYI++VHL HDT       +G+EHPPPR F +ELSKEEIQ+QE KIK+LVEAG  TTDL K+LQRDGKRLGEQGKQKVRN+RR++Q E+ P   +GL+S  P                XXXXXXXXXX                        ++   P    A+P+   + S+ +    + PH V     A   GA S                 +AFAKELAS  SEI SR+AM RVIAHARVAA  AI+VE+QCQG+
Sbjct:  111 KINCNWKVLCQWPQRTVGPYITQVHLTHDTTPEGGMSDGKEHPPPRVFGDELSKEEIQQQELKIKELVEAGFGTTDLQKYLQRDGKRLGEQGKQKVRNLRRKYQ-EAKPLANAGLSSQTPSVVAPPETPRHIQPLPXXXXXXXXXXPR----------------------ESSAEPFGLGASPSLPLAVSSPSAFVRDSPHGVRLSSTAPGAGARSNGEASNPSLETSRHADCMAFAKELASACSEIKSRDAMYRVIAHARVAALNAIQVELQCQGR 364
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BLAST of mRNA_H-canaliculatus_M_contigs7549.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS0_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.410e-40
Identity = 80/120 (66.67%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 QISCNWRVIVQWPQRTNGPYISKVHLRHDTPFGEEGQN-GQEHPPPRAFDNELSKEEIQRQEDKIKDLVEAGMRTTDLHKFLQRDGKRLGEQGKQKVRNIRRRHQLESAPS--GLASPIP 351
            +I+CNW+V+ QWPQRT GPYI++VHL HDT   E G + G+EHPPPR F +ELSKEEIQ+QE KIK+LVEAG  TT+LHK+LQRDGKRLGEQGKQKVRN+RR++Q    P+  GL+S  P
Sbjct:  120 KINCNWKVLCQWPQRTAGPYITQVHLTHDT-IPEGGMSDGKEHPPPRVFGDELSKEEIQQQELKIKELVEAGFGTTELHKYLQRDGKRLGEQGKQKVRNLRRKYQEAKPPANAGLSSQTP 238
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BLAST of mRNA_H-canaliculatus_M_contigs7549.1.1 vs.
Match: SWIM-type (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.720e-9
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 QISCNWRVIVQWPQRTNGPYISK--VHLRHDTPFGEEGQNGQEHPPPRAFDNELSKEEIQRQEDKIKDLVEAGMRTTDLHKFLQRDGKRLGEQGKQKVRNI 297
            +I C + V + W   +  P ++K  + L H T    +   G+EH  PRA +NE+S  EI+ + D +++L  + ++TT++HK L+R GKRLG+ GKQKVR +
Sbjct:  187 KIGCAFEVGLWWAANSPAPIVAKGKLCLTHHT----KTSGGKEHERPRAIENEMSVAEIEAKRDFLRELHASRVKTTEIHKTLERVGKRLGQAGKQKVRTM 283
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BLAST of mRNA_H-canaliculatus_M_contigs7549.1.1 vs.
Match: MULE (domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.740e-7
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  106 GQNGQEHPPPRAFDNELSKEEIQRQEDKIKDLVEAGMRTTDLHKFLQRDGKRLGEQGKQKVRNIR 300
            G  G EH PPR F+NE+++E+++ +   IK + + G++T +++K+L   GKRLGE+G+Q VR +R
Sbjct:    4 GSEGTEHDPPRVFENEITREDLEAESAHIKKMCDKGVKTAEVYKYLTDTGKRLGEKGRQMVRLMR 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7549.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.370e-4948.01protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.410e-4066.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
SWIM-type8.720e-938.61domain-containing protein n=2 Tax=Ectocarpus sp. C... [more]
MULE6.740e-743.08domain-containing protein n=3 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7549contigH-canaliculatus_M_contigs7549:3191..5172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size843
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001480.1
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.9237084-CDS-H-canaliculatus_M_contigs7549:3190..34171696854091.9237084-CDS-H-canaliculatus_M_contigs7549:3190..3417Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7549 3191..3417 -
1696854091.9449973-CDS-H-canaliculatus_M_contigs7549:3900..42311696854091.9449973-CDS-H-canaliculatus_M_contigs7549:3900..4231Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7549 3901..4231 -
1696854091.9576194-CDS-H-canaliculatus_M_contigs7549:4598..48141696854091.9576194-CDS-H-canaliculatus_M_contigs7549:4598..4814Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7549 4599..4814 -
1696854091.9703665-CDS-H-canaliculatus_M_contigs7549:5103..51721696854091.9703665-CDS-H-canaliculatus_M_contigs7549:5103..5172Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7549 5104..5172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7549.1.1prot_H-canaliculatus_M_contigs7549.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7549 3191..5172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7549.1.1

>prot_H-canaliculatus_M_contigs7549.1.1 ID=prot_H-canaliculatus_M_contigs7549.1.1|Name=mRNA_H-canaliculatus_M_contigs7549.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=281bp
QISCNWRVIVQWPQRTNGPYISKVHLRHDTPFGEEGQNGQEHPPPRAFDN
ELSKEEIQRQEDKIKDLVEAGMRTTDLHKFLQRDGKRLGEQGKQKVRNIR
RRHQLESAPSGLASPIPPAASSAAAIAAAAAHQQREERQETEEPPLSPPP
PPPSPPPSPAPPPPTPPDNGHFPASTAATPTQSSSRSACTLGSSNGPHSV
IGKLLASNGGAPSNCGAPSYLEATKYADCVAFAKELASTASEITSREAMN
RVIAHARVAADTAIRVEVQCQGQGRRAGSG*
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mRNA from alignment at H-canaliculatus_M_contigs7549:3191..5172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7549.1.1 ID=mRNA_H-canaliculatus_M_contigs7549.1.1|Name=mRNA_H-canaliculatus_M_contigs7549.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1982bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7549:3191..5172- (Hapterophycus canaliculatus Oshoro7m male)
CAGATCAGTTGCAACTGGAGAGTGATAGTTCAGTGGCCGCAACGGACAAA
CGGTCCCTACATCTCAAAGGTGTGCTGAGATTCGTAGCACCAGGCACCCA
GCAAAGGAGTGTCGATCGCATGTTTTTTGCTACGCACCTGTCTCAGAATG
CAGAGCATTCAACCGGGAAAAGCTGAACGGTCGCCAAACTGCCAACAGCG
AGCGATGCGGCCGGAGCCCCGCCAGCGACCGTTCTGCTCGCGCGTTCTCC
GTGGCTTACTTTGCACATCCCCCACGTCATGTGCTGGAGTCTGCGGCTGT
CCCTCGGCGTTCCGGCACTCGCACTCAAGCGCGTCGCGACCTCGCCGCCT
ACGCGCAGGTGCACCTTCGGCACGACACGCCCTTCGGGGAAGAAGGACAA
AACGGGCAGGAGCACCCACCACCGCGAGCCTTCGACAACGAGCTCAGCAA
GGAGGAGATCCAGCGGCAGGAGGACAAGATCAAGGATCTGGTGGAGGCGG
GCATGCGCACGACGGATCTTCATAAGTTCCTCCAGCGCGACGGGAAGAGA
CTGGGAGAGCAGGGCAAGCAGAAGGTGTGCTTGGTGCTCGGGCTCTCTCG
CCGGAGTTGCCGCTTGTCAACGATCACGACGATCACGTTGGAGCCCTCCA
CGTGGCACCTCCGAAAGACATAGCGCTGCTTGTACAGAATGAGGACGTGG
CTGTGAAGTTCGTTCTGTGTGCGCCCTTGCCCCATGACATGGACGGTAGA
CCCGCCCACACCATTTTTCTTGGGACATAACTCAACGTTGGAGAAATGGA
CACATTCGCAATCCTCATGGTTGTCCTCACTGGAGGCGAAGAGAGAGAGA
GAGAAAGAGAAGACCATGCCTCCTCGTGTTATCGTTTGCCCCATGTTGCG
CTTTCGGAGGGTAACAACAAAGCAACCACACCACGGAGCAGGTGCGGAAC
ATCCGCCGTAGGCACCAGCTGGAGAGCGCGCCCAGCGGGTTGGCATCTCC
AATACCGCCGGCGGCATCATCAGCGGCGGCGATAGCGGCAGCGGCTGCAC
ACCAACAACGGGAAGAACGGCAAGAGACCGAGGAGCCACCATTATCACCA
CCGCCACCGCCGCCCTCCCCACCACCGTCACCAGCGCCGCCGCCGCCAAC
GCCGCCAGATAACGGGCATTTTCCTGCTTCGACGGCCGCAACACCGACAC
AGTCTTCATCTCGAAGCGCGTGCACTCTCGGGAGCTCAAACGGGCCCCAC
TCCGTCATAGGTAAGTTGCTTGGTTCGTAGGCTTGACGAGCCCTTCAGTC
CGACTTCGAGGATGCGACGTGCTTGTCGGTGTGATCGGGACGAGACAACG
GCTCGGGTAACATATTCCCTCGGGTTGAGAGATATGGGGGCCTGACTTGA
GCTGCGCCATCTCCTGGCGATTCTACGTGCTCACTGTCCCGTTTGTTACA
TGGCCGCGTTCATGGTCATGCCAGTGGTCCGACGCGTCAAACCTGCTCTG
AAGATTCAAGTGCTTGTGCTTGTAGTTCCGCCGCGAAAATAATCAATACG
AAAATGGAGTCATCCATTCTCTGGATTCACGCGGGGAGCTAAATATCCGA
GAAGACAAACGAGACTCCTCTCTGCCGCTTACCTATCGACAAATCGTGGC
AAGATGCACCGCAACCGTGGCTTATCCAGGGCGATATCGCTGCACAAACT
TAATCTGCCACCACAGGACCCGCGACGAACGGAGCGAACGAGAACGGGGT
CCAAGCATCGAACGGCGGAGCGCCCTCGAACTGCGGGGCCCCTTCGTACC
TGGAGGCCACAAAATACGCCGATTGCGTCGCTTTCGCCAAGGAGCTCGCC
TCCACGGCGTCGGAGATAACGAGCCGCGAAGCCATGAATCGCGTTATCGC
GCACGCGAGGGTGGCCGCAGACACCGCCATCCGAGTGGAAGTCCAGTGTC
AAGGCCAAGGCCGCCGGGCGGGGTCTGGTTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7549:3191..5172-

>mRNA_H-canaliculatus_M_contigs7549.1.1 ID=mRNA_H-canaliculatus_M_contigs7549.1.1|Name=mRNA_H-canaliculatus_M_contigs7549.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=843bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7549:3191..5172- (Hapterophycus canaliculatus Oshoro7m male)
CAGATCAGTTGCAACTGGAGAGTGATAGTTCAGTGGCCGCAACGGACAAA
CGGTCCCTACATCTCAAAGGTGCACCTTCGGCACGACACGCCCTTCGGGG
AAGAAGGACAAAACGGGCAGGAGCACCCACCACCGCGAGCCTTCGACAAC
GAGCTCAGCAAGGAGGAGATCCAGCGGCAGGAGGACAAGATCAAGGATCT
GGTGGAGGCGGGCATGCGCACGACGGATCTTCATAAGTTCCTCCAGCGCG
ACGGGAAGAGACTGGGAGAGCAGGGCAAGCAGAAGGTGCGGAACATCCGC
CGTAGGCACCAGCTGGAGAGCGCGCCCAGCGGGTTGGCATCTCCAATACC
GCCGGCGGCATCATCAGCGGCGGCGATAGCGGCAGCGGCTGCACACCAAC
AACGGGAAGAACGGCAAGAGACCGAGGAGCCACCATTATCACCACCGCCA
CCGCCGCCCTCCCCACCACCGTCACCAGCGCCGCCGCCGCCAACGCCGCC
AGATAACGGGCATTTTCCTGCTTCGACGGCCGCAACACCGACACAGTCTT
CATCTCGAAGCGCGTGCACTCTCGGGAGCTCAAACGGGCCCCACTCCGTC
ATAGGTAAGTTGCTTGCATCGAACGGCGGAGCGCCCTCGAACTGCGGGGC
CCCTTCGTACCTGGAGGCCACAAAATACGCCGATTGCGTCGCTTTCGCCA
AGGAGCTCGCCTCCACGGCGTCGGAGATAACGAGCCGCGAAGCCATGAAT
CGCGTTATCGCGCACGCGAGGGTGGCCGCAGACACCGCCATCCGAGTGGA
AGTCCAGTGTCAAGGCCAAGGCCGCCGGGCGGGGTCTGGTTAA
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