mRNA_H-canaliculatus_M_contigs75481.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75481.2.1
Unique Name	mRNA_H-canaliculatus_M_contigs75481.2.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F5A8_9RHOB)

HSP 1 Score: 202 bits (515), Expect = 1.780e-65
Identity = 99/118 (83.90%), Postives = 108/118 (91.53%), Query Frame = 1

Query:   10 IKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTALLAS 363
            +KRI+SGGPFEAKIGYCRAVVAGGFVHVAGTVGQG++V+ QCQSALDVI  AL EAGS+F+HAVRVTYMLP  ADFEACWPILSATF +NPPAATMI C LIDPKYKIEIEVTA+L S
Sbjct:    1 MKRIYSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGESVEEQCQSALDVIEKALNEAGSNFAHAVRVTYMLPKVADFEACWPILSATFGENPPAATMIECGLIDPKYKIEIEVTAMLPS 118

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BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: RidA (family protein n=1 Tax=Sulfitobacter sp. 20_GPM-1509m TaxID=1380367 RepID=UPI00048B5402)

HSP 1 Score: 195 bits (495), Expect = 2.130e-62
Identity = 95/117 (81.20%), Postives = 103/117 (88.03%), Query Frame = 1

Query:    4 MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTAL 354
            MTI+RIHSGG FEAKIGYCRAVVAGGFVHVAGTVGQGDTV+AQC SAL++I +AL EAGS F  AVRVTYMLP+ ADFEACWP+L  TF DNPPAATMI C LIDPK+ IEIEVTAL
Sbjct:    1 MTIRRIHSGGAFEAKIGYCRAVVAGGFVHVAGTVGQGDTVEAQCASALEIIGNALNEAGSGFDKAVRVTYMLPNAADFEACWPVLRETFGDNPPAATMIECGLIDPKFLIEIEVTAL 117

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BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: RidA (family protein n=1 Tax=Salipiger bermudensis TaxID=344736 RepID=UPI001CD7FEE5)

HSP 1 Score: 191 bits (486), Expect = 4.860e-61
Identity = 93/117 (79.49%), Postives = 101/117 (86.32%), Query Frame = 1

Query:    4 MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTAL 354
            MTIKRIH+G PFE KIGYCRAVVAGGFVHVAGTVGQGDTV  QC+SAL+VI  AL EAGS F+ AVRVTY LPD A+FEACWPILS TF DNPPAATM+ C LIDPKY+IEIE+T L
Sbjct:    1 MTIKRIHTGSPFEEKIGYCRAVVAGGFVHVAGTVGQGDTVTEQCRSALEVIGKALAEAGSSFADAVRVTYYLPDAAEFEACWPILSETFGDNPPAATMVECNLIDPKYRIEIELTTL 117

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BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: Endoribonuclease (L-PSP family protein n=3 Tax=Sagittula TaxID=58842 RepID=A3K9W5_9RHOB)

HSP 1 Score: 191 bits (486), Expect = 5.350e-61
Identity = 93/118 (78.81%), Postives = 102/118 (86.44%), Query Frame = 1

Query:    1 KMTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTAL 354
            K+TI+RIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTV  QC++ALDVI  AL+EAGS F  AVRV Y LPD A+FE CWPIL+  F DNPPAATMI C LIDPKY+IEIE+TAL
Sbjct:    4 KVTIRRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVADQCRAALDVIGKALQEAGSGFDKAVRVNYYLPDAAEFEPCWPILAEVFGDNPPAATMIECKLIDPKYRIEIELTAL 121

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BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: Enamine (deaminase RidA (YjgF/YER057c/UK114 family) n=1 Tax=Sulfitobacter noctilucicola TaxID=1342301 RepID=A0A7W6Q4S0_9RHOB)

HSP 1 Score: 191 bits (485), Expect = 7.130e-61
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 1

Query:    4 MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTALL 357
            M IKRIHSGG FE+K+GYCRAVVAGGFVHVAGTVGQGDTV+AQC SALD+I  ALK+AG+ F+  VRVTYMLPD  +FE CWP+L+ TF  NPPAATMI C LIDPKY+IEIEVTALL
Sbjct:    1 MAIKRIHSGGEFESKVGYCRAVVAGGFVHVAGTVGQGDTVEAQCASALDIIGDALKQAGAGFADVVRVTYMLPDRTEFENCWPVLAETFGTNPPAATMIECGLIDPKYRIEIEVTALL 118

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BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: Enamine (deaminase RidA (YjgF/YER057c/UK114 family) n=1 Tax=Sagittula marina TaxID=943940 RepID=A0A7W6GSL1_9RHOB)

HSP 1 Score: 191 bits (484), Expect = 9.490e-61
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 1

Query:    4 MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTAL 354
            MTIKRIH+G PFE+KIGYCRAVVAGGFVHVAGTVGQGDTVQ QC++ALDVI  AL+EAGS F  AVRV Y LPD A+FEACWP+L+ TF DNPPAATM+ C LIDPKY+IEIE+T L
Sbjct:    1 MTIKRIHTGSPFESKIGYCRAVVAGGFVHVAGTVGQGDTVQDQCRAALDVIRKALEEAGSSFDKAVRVNYYLPDAAEFEACWPLLTETFGDNPPAATMVECNLIDPKYRIEIELTCL 117

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BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: RidA (family protein n=2 Tax=Thalassobius TaxID=335927 RepID=A0A6L8LNF6_9RHOB)

HSP 1 Score: 188 bits (477), Expect = 1.140e-59
Identity = 89/117 (76.07%), Postives = 102/117 (87.18%), Query Frame = 1

Query:    4 MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTAL 354
            MTIKRIHSGG FEAKIGYCRAVVAGGFVHVAGTVGQGDTV+ QC+SALD I  AL++AG+ F++AVRV Y LPD A+FE CWP+L+  F DNPPAATMI C LIDPK++IEIE+TAL
Sbjct:    1 MTIKRIHSGGEFEAKIGYCRAVVAGGFVHVAGTVGQGDTVEEQCRSALDTIGKALEQAGTSFANAVRVNYYLPDAAEFEPCWPVLAEVFGDNPPAATMIQCGLIDPKFRIEIELTAL 117

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BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: RidA (family protein n=2 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=UPI001479BF04)

HSP 1 Score: 187 bits (475), Expect = 2.380e-59
Identity = 92/118 (77.97%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    4 MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTALL 357
            M IKRI SGG FEAK+GYCRAVVAGG+VHVAGTVGQGD V AQCQSALD I +AL EAG+ F+  VRVTYMLPD  +FE CWPILSATF DNPP ATMI C LIDPKY+IEIEVTA L
Sbjct:    1 MAIKRISSGGEFEAKVGYCRAVVAGGWVHVAGTVGQGDDVVAQCQSALDTIGNALAEAGASFADVVRVTYMLPDRTEFEPCWPILSATFGDNPPTATMIECGLIDPKYRIEIEVTAFL 118

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: Endoribonuclease (L-PSP family protein n=8 Tax=Rhodobacterales TaxID=204455 RepID=Q0FI37_SALBH)

HSP 1 Score: 187 bits (474), Expect = 3.280e-59
Identity = 91/117 (77.78%), Postives = 98/117 (83.76%), Query Frame = 1

Query:    4 MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTAL 354
            MTIKRIH+G PFE KIGYCRAVVAGGFVHVAGTVGQGDTV  QC+SAL+VI  AL E GS F+ AVRVTY LPD A+FE CWPILS TF DNPP ATMI C LIDPKY+IEIE+T L
Sbjct:    1 MTIKRIHTGSPFEEKIGYCRAVVAGGFVHVAGTVGQGDTVTEQCRSALEVIGKALAETGSSFADAVRVTYYLPDAAEFEPCWPILSETFGDNPPVATMIECNLIDPKYRIEIELTTL 117

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Match: Endoribonuclease (L-PSP n=1 Tax=Pseudooceanicola atlanticus TaxID=1461694 RepID=A0A0A0EF71_9RHOB)

HSP 1 Score: 187 bits (474), Expect = 3.280e-59
Identity = 92/117 (78.63%), Postives = 99/117 (84.62%), Query Frame = 1

Query:    4 MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDVIASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMISCALIDPKYKIEIEVTAL 354
            MTI+RIHSGG FEAKIGYCRAVVAGGFVHVAGTVGQGD+V  QC+SAL VI  AL++AGS F   VRVTY LPD A+FE CWPILS  F DNPPAATMI C LIDPKY+IEIEVTAL
Sbjct:    1 MTIQRIHSGGAFEAKIGYCRAVVAGGFVHVAGTVGQGDSVTEQCKSALSVIGDALEKAGSSFEKVVRVTYYLPDRAEFEPCWPILSEAFGDNPPAATMIECGLIDPKYRIEIEVTAL 117

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75481.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	1.780e-65	83.90	protein n=1 Tax=Sulfitobacter sp. TaxID=1903071 Re...	[more]
RidA	2.130e-62	81.20	family protein n=1 Tax=Sulfitobacter sp. 20_GPM-15...	[more]
RidA	4.860e-61	79.49	family protein n=1 Tax=Salipiger bermudensis TaxID...	[more]
Endoribonuclease	5.350e-61	78.81	L-PSP family protein n=3 Tax=Sagittula TaxID=58842...	[more]
Enamine	7.130e-61	77.12	deaminase RidA (YjgF/YER057c/UK114 family) n=1 Tax...	[more]
Enamine	9.490e-61	77.78	deaminase RidA (YjgF/YER057c/UK114 family) n=1 Tax...	[more]
RidA	1.140e-59	76.07	family protein n=2 Tax=Thalassobius TaxID=335927 R...	[more]
RidA	2.380e-59	77.97	family protein n=2 Tax=Ruegeria arenilitoris TaxID...	[more]
Endoribonuclease	3.280e-59	77.78	L-PSP family protein n=8 Tax=Rhodobacterales TaxID...	[more]
Endoribonuclease	3.280e-59	78.63	L-PSP n=1 Tax=Pseudooceanicola atlanticus TaxID=14...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75481	contig	H-canaliculatus_M_contigs75481:145..510 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	1402135.SUH3_19530
Preferred name	MA20_06535
PFAMs	Ribonuc_L-PSP
Model size	366
Max annot lvl	28211\|Alphaproteobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.17e-63
EggNOG OGs	COG0251@1\|root,COG0251@2\|Bacteria,1RH61@1224\|Proteobacteria,2UAE3@28211\|Alphaproteobacteria,3ZXQQ@60136\|Sulfitobacter
Description	Endoribonuclease L-PSP
Cds size	363
COG category	J

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854091.8686242-CDS-H-canaliculatus_M_contigs75481:144..507	1696854091.8686242-CDS-H-canaliculatus_M_contigs75481:144..507	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75481 145..507 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854091.8869972-UTR-H-canaliculatus_M_contigs75481:507..510	1696854091.8869972-UTR-H-canaliculatus_M_contigs75481:507..510	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs75481 508..510 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75481.2.1	prot_H-canaliculatus_M_contigs75481.2.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75481 145..507 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75481:145..510-
coding sequence from alignment at H-canaliculatus_M_contigs75481:145..510-

protein sequence of mRNA_H-canaliculatus_M_contigs75481.2.1

>prot_H-canaliculatus_M_contigs75481.2.1 ID=prot_H-canaliculatus_M_contigs75481.2.1|Name=mRNA_H-canaliculatus_M_contigs75481.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=121bp
MTIKRIHSGGPFEAKIGYCRAVVAGGFVHVAGTVGQGDTVQAQCQSALDV
IASALKEAGSDFSHAVRVTYMLPDPADFEACWPILSATFSDNPPAATMIS
CALIDPKYKIEIEVTALLAS*

mRNA from alignment at H-canaliculatus_M_contigs75481:145..510-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75481.2.1 ID=mRNA_H-canaliculatus_M_contigs75481.2.1|Name=mRNA_H-canaliculatus_M_contigs75481.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=366bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75481:145..510- (Hapterophycus canaliculatus Oshoro7m male)
AAGATGACAATCAAGCGCATACATTCCGGCGGCCCGTTTGAGGCAAAAAT
TGGATACTGTCGCGCGGTTGTTGCCGGCGGGTTCGTGCACGTGGCAGGAA
CTGTCGGACAGGGCGACACAGTTCAGGCTCAATGCCAATCTGCTTTGGAT
GTGATCGCGTCAGCACTCAAAGAGGCTGGCAGTGATTTTTCCCATGCTGT
GCGCGTGACATACATGTTGCCTGATCCGGCTGACTTTGAAGCATGCTGGC
CAATTCTTTCGGCGACATTTAGTGACAACCCACCCGCCGCGACGATGATT
TCATGCGCGTTAATCGATCCGAAATACAAAATTGAGATTGAAGTAACAGC
GCTTTTGGCAAGCTGA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75481:145..510-

>mRNA_H-canaliculatus_M_contigs75481.2.1 ID=mRNA_H-canaliculatus_M_contigs75481.2.1|Name=mRNA_H-canaliculatus_M_contigs75481.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=363bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75481:145..510- (Hapterophycus canaliculatus Oshoro7m male)
ATGACAATCAAGCGCATACATTCCGGCGGCCCGTTTGAGGCAAAAATTGG
ATACTGTCGCGCGGTTGTTGCCGGCGGGTTCGTGCACGTGGCAGGAACTG
TCGGACAGGGCGACACAGTTCAGGCTCAATGCCAATCTGCTTTGGATGTG
ATCGCGTCAGCACTCAAAGAGGCTGGCAGTGATTTTTCCCATGCTGTGCG
CGTGACATACATGTTGCCTGATCCGGCTGACTTTGAAGCATGCTGGCCAA
TTCTTTCGGCGACATTTAGTGACAACCCACCCGCCGCGACGATGATTTCA
TGCGCGTTAATCGATCCGAAATACAAAATTGAGATTGAAGTAACAGCGCT
TTTGGCAAGCTGA