mRNA_H-canaliculatus_M_contigs75471.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75471.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75471.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6ANS9_9BACT)

HSP 1 Score: 195 bits (496), Expect = 4.470e-60
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGA+FVN I EVPEGSVLLFSAHGVSP  R AA++R LHAIDATCPLVTKVHL
Sbjct:    1 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAIFVNTIGEVPEGSVLLFSAHGVSPEIRQAARDRNLHAIDATCPLVTKVHL 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DZL4_9BACT)

HSP 1 Score: 184 bits (466), Expect = 1.500e-55
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGVHMAIDSL LTL+KFG PVYVYHEIVHNQ+VVN F+ KGAVFV+ IDEVPEGSVLLFSAHGVSP  R AA++RKLHAIDATCPLVTKVHL
Sbjct:    1 MKIILAAPRGFCAGVHMAIDSLDLTLKKFGSPVYVYHEIVHNQYVVNLFRDKGAVFVDAIDEVPEGSVLLFSAHGVSPQIREAAKQRKLHAIDATCPLVTKVHL 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CR30_9BACT)

HSP 1 Score: 183 bits (465), Expect = 2.070e-55
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGV+MAIDSL LTL+KFGPPVYVYHEIVHNQ+VVN F+ KGAVFVNEIDEVPEGSVLLFSAHGVSP  R AA+ R L+A+DATCPLVTKVHL
Sbjct:    1 MKIILAAPRGFCAGVNMAIDSLDLTLQKFGPPVYVYHEIVHNQYVVNTFRDKGAVFVNEIDEVPEGSVLLFSAHGVSPQVREAAKARSLNALDATCPLVTKVHL 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=13 Tax=Rhodopirellula TaxID=265488 RepID=ISPH_RHOBA)

HSP 1 Score: 182 bits (461), Expect = 9.220e-55
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGV+MAIDSL LTL+KFGPPVYVYHEIVHNQFVV  F+ KGAVFV+ IDEVPEG VLLFSAHGVSP  R AAQ RKLHA+DATCPLVTKVHL
Sbjct:    4 MKIILAAPRGFCAGVNMAIDSLDLTLQKFGPPVYVYHEIVHNQFVVKTFREKGAVFVDTIDEVPEGGVLLFSAHGVSPEIRKAAQARKLHALDATCPLVTKVHL 107
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5Z786_9BACT)

HSP 1 Score: 181 bits (460), Expect = 1.270e-54
Identity = 88/104 (84.62%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGVHMAIDSL LTL KFGPPVYVYHEIVHN++VVN FQ KGAVFVN I+EVPEGSVLLFSAHGVSP  R  A+++KL+AIDATCPLVTKVHL
Sbjct:    1 MKIILAAPRGFCAGVHMAIDSLDLTLRKFGPPVYVYHEIVHNKYVVNMFQDKGAVFVNHIEEVPEGSVLLFSAHGVSPEIRQEARDQKLNAIDATCPLVTKVHL 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A5C5XNG1_9BACT)

HSP 1 Score: 181 bits (459), Expect = 1.700e-54
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKI+LAAPRGFCAGVHMAIDSL LTL+KFGPPVYVYHEIVHNQ VV EF+GKGAVFV+ IDEVP GSVLLFSAHGVSP  R AA+ R+L AIDATCPLVTKVHL
Sbjct:    1 MKILLAAPRGFCAGVHMAIDSLDLTLQKFGPPVYVYHEIVHNQHVVGEFKGKGAVFVDSIDEVPRGSVLLFSAHGVSPEIREAARSRELFAIDATCPLVTKVHL 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2F9R3_9BACT)

HSP 1 Score: 180 bits (456), Expect = 4.570e-54
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGV+MAIDSL LTL KFGPPVYVYHEIVHNQ+VVN F+ KGAVFV+ IDEVP GSVLLFSAHGVSP TR AA++RKL+A+DATCPLVTKVHL
Sbjct:    1 MKIILAAPRGFCAGVNMAIDSLDLTLMKFGPPVYVYHEIVHNQYVVNTFKEKGAVFVDSIDEVPVGSVLLFSAHGVSPETRQAARDRKLNALDATCPLVTKVHL 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517NNU5_9BACT)

HSP 1 Score: 177 bits (450), Expect = 3.660e-53
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGV+MAIDSL LTL+KFGPPVYVYHEIVHNQ+VVN F+ KGA+FV+ IDEVPE SVLLFSAHGVSPA R AA+ R+L+A+DATCPLVTKVHL
Sbjct:    1 MKIILAAPRGFCAGVNMAIDSLELTLQKFGPPVYVYHEIVHNQYVVNRFKEKGAIFVDTIDEVPEESVLLFSAHGVSPAIREAAKARQLNALDATCPLVTKVHL 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6E2Q4_9BACT)

HSP 1 Score: 177 bits (450), Expect = 4.070e-53
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGVHMAIDSL LTL+KFGPPVYVYHEIVHN++VV+ F+ KGAVFV  I+EVPEGSVLLFSAHGVSP TR AA+ R L+A+DATCPLVTKVHL
Sbjct:    1 MKIILAAPRGFCAGVHMAIDSLRLTLQKFGPPVYVYHEIVHNKYVVDFFRDKGAVFVESIEEVPEGSVLLFSAHGVSPETRQAAKARNLNALDATCPLVTKVHL 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Match: 4-hydroxy-3-methylbut-2-enyl (diphosphate reductase n=1 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517N658_9BACT)

HSP 1 Score: 177 bits (449), Expect = 5.320e-53
Identity = 86/104 (82.69%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    4 MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQGKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVTKVHL 315
            MKIILAAPRGFCAGV+MAIDSL LTL+KFG PVYVYHEIVHNQ+VV  F  KGAVFVNEIDE+PEGSV+LFSAHGVSPA R AA+ R L+A+DATCPLVTKVHL
Sbjct:    1 MKIILAAPRGFCAGVNMAIDSLDLTLQKFGAPVYVYHEIVHNQYVVQTFSEKGAVFVNEIDEIPEGSVVLFSAHGVSPAIREAARARNLNALDATCPLVTKVHL 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75471.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
4-hydroxy-3-methylbut-2-enyl4.470e-6091.35diphosphate reductase n=1 Tax=Rhodopirellula pille... [more]
4-hydroxy-3-methylbut-2-enyl1.500e-5586.54diphosphate reductase n=1 Tax=Novipirellula artifi... [more]
4-hydroxy-3-methylbut-2-enyl2.070e-5585.58diphosphate reductase n=1 Tax=Novipirellula galeif... [more]
4-hydroxy-3-methylbut-2-enyl9.220e-5585.58diphosphate reductase n=13 Tax=Rhodopirellula TaxI... [more]
4-hydroxy-3-methylbut-2-enyl1.270e-5484.62diphosphate reductase n=1 Tax=Planctomycetes bacte... [more]
4-hydroxy-3-methylbut-2-enyl1.700e-5484.62diphosphate reductase n=2 Tax=Planctomycetes TaxID... [more]
4-hydroxy-3-methylbut-2-enyl4.570e-5484.62diphosphate reductase n=1 Tax=Pirellulaceae bacter... [more]
4-hydroxy-3-methylbut-2-enyl3.660e-5382.69diphosphate reductase n=1 Tax=Planctomycetes bacte... [more]
4-hydroxy-3-methylbut-2-enyl4.070e-5382.69diphosphate reductase n=1 Tax=Novipirellula aureli... [more]
4-hydroxy-3-methylbut-2-enyl5.320e-5382.69diphosphate reductase n=1 Tax=Rubripirellula lacri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75471contigH-canaliculatus_M_contigs75471:24..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog243090.RB9288
Preferred nameispH
PFAMsLYTB
Model size339
Max annot lvl203682|Planctomycetes
KEGG rclassRC01137,RC01487
KEGG koko:K03527
KEGG ReactionR05884,R08210
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.13e-56
EggNOG OGsCOG0761@1|root,COG0761@2|Bacteria,2IXK4@203682|Planctomycetes
EC1.17.7.4
DescriptionCatalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Cds size336
COG categoryIM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.8124557-CDS-H-canaliculatus_M_contigs75471:23..3591696854091.8124557-CDS-H-canaliculatus_M_contigs75471:23..359Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75471 24..359 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.8299153-UTR-H-canaliculatus_M_contigs75471:359..3621696854091.8299153-UTR-H-canaliculatus_M_contigs75471:359..362Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75471 360..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75471.1.1prot_H-canaliculatus_M_contigs75471.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75471 24..359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75471.1.1

>prot_H-canaliculatus_M_contigs75471.1.1 ID=prot_H-canaliculatus_M_contigs75471.1.1|Name=mRNA_H-canaliculatus_M_contigs75471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
MKIILAAPRGFCAGVHMAIDSLSLTLEKFGPPVYVYHEIVHNQFVVNEFQ
GKGAVFVNEIDEVPEGSVLLFSAHGVSPATRSAAQERKLHAIDATCPLVT
KVHLVLKSDLP*
back to top

mRNA from alignment at H-canaliculatus_M_contigs75471:24..362-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75471.1.1 ID=mRNA_H-canaliculatus_M_contigs75471.1.1|Name=mRNA_H-canaliculatus_M_contigs75471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=339bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75471:24..362- (Hapterophycus canaliculatus Oshoro7m male)
ATCATGAAGATCATTTTGGCGGCTCCCAGAGGGTTTTGTGCCGGTGTCCA
CATGGCCATCGATTCACTCAGTCTAACTCTCGAGAAGTTCGGCCCCCCCG
TCTATGTCTATCATGAAATCGTCCACAACCAGTTTGTAGTCAATGAGTTT
CAAGGCAAAGGGGCTGTCTTTGTCAATGAAATCGACGAAGTCCCTGAGGG
AAGCGTTCTGTTGTTTTCGGCTCACGGTGTTTCGCCCGCCACCCGAAGCG
CTGCCCAAGAACGAAAGCTGCACGCGATCGACGCGACGTGTCCGTTGGTG
ACCAAAGTGCACCTCGTTTTAAAAAGTGATTTGCCCTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75471:24..362-

>mRNA_H-canaliculatus_M_contigs75471.1.1 ID=mRNA_H-canaliculatus_M_contigs75471.1.1|Name=mRNA_H-canaliculatus_M_contigs75471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75471:24..362- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGATCATTTTGGCGGCTCCCAGAGGGTTTTGTGCCGGTGTCCACAT
GGCCATCGATTCACTCAGTCTAACTCTCGAGAAGTTCGGCCCCCCCGTCT
ATGTCTATCATGAAATCGTCCACAACCAGTTTGTAGTCAATGAGTTTCAA
GGCAAAGGGGCTGTCTTTGTCAATGAAATCGACGAAGTCCCTGAGGGAAG
CGTTCTGTTGTTTTCGGCTCACGGTGTTTCGCCCGCCACCCGAAGCGCTG
CCCAAGAACGAAAGCTGCACGCGATCGACGCGACGTGTCCGTTGGTGACC
AAAGTGCACCTCGTTTTAAAAAGTGATTTGCCCTGA
back to top