mRNA_H-canaliculatus_M_contigs75461.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75461.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75461.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75461.1.1 vs.
Match: G-patch (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G351_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.830e-46
Identity = 95/139 (68.35%), Postives = 102/139 (73.38%), Query Frame = 1 
Query:    1 QLLAGMGWKLDEGLGARKQGRVNPLQTTFKRDTTGLGAGEKLRPRVTHFPSHVPSQALNAPDGKSEAVRAHESLDRRR-GRRRDRDGVRERRGRDAGGGS----EAAHEPRGHGRIPADSSSGGKGSADSWGGFWGQRT 402
            QLLAGMGWKLDEGLG+RKQGRVNPLQTTFKRDTTGLGAG KLRPRVTHFPSHVPSQALNAPDGKS+AVRAHE LDR R G             RD GG S    +A+ E  G    P+  + GG  + DSWGGFWGQ T
Sbjct:  151 QLLAGMGWKLDEGLGSRKQGRVNPLQTTFKRDTTGLGAGGKLRPRVTHFPSHVPSQALNAPDGKSDAVRAHERLDRGRLGGXXXXXXXXXXXXRDGGGCSGNRLDASGESSGVNAEPSARAGGGGAAGDSWGGFWGQGT 289
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BLAST of mRNA_H-canaliculatus_M_contigs75461.1.1 vs.
Match: G-patch (domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S4I8_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 3.750e-7
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 QLLAGMGWKLDEGLGARKQGRVNPLQTTFKRDTTGLGAGEKLRPRVTHFPSHVPSQ 168
            QLL   GWK +EGLG + QGR +P+ T  K+DT GLG  +  + R+TH  + +  Q
Sbjct:  123 QLLKSQGWKYEEGLGPKGQGRRHPIATALKQDTLGLGHEKSTKRRITHTATEIEEQ 178
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BLAST of mRNA_H-canaliculatus_M_contigs75461.1.1 vs.
Match: G (patch domain and ankyrin repeat-containing protein 1 homolog n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000540165A)

HSP 1 Score: 52.8 bits (125), Expect = 3.500e-6
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 QLLAGMGWKLDEGLGARKQGRVNPLQTTFKRDTTGLGAGEKLRPRVTHFPSHVPS 165
            QLL   GWK   GLGA +QGR+ P++T FK++  G+GA EK++ ++ H  +  PS
Sbjct:   23 QLLKKHGWKEGTGLGASQQGRLEPVETYFKKNKRGVGA-EKVKKKILHLSTTTPS 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75461.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
G-patch4.830e-4668.35domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
G-patch3.750e-744.64domain-containing protein n=1 Tax=Mucor circinatus... [more]
G3.500e-645.45patch domain and ankyrin repeat-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75461contigH-canaliculatus_M_contigs75461:1..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G351
Preferred nameGPANK1
PFAMsAnk_2,Ank_4,G-patch
Model size402
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0097159,GO:1901363
Exons1
Evalue6.17e-44
EggNOG OGsKOG2384@1|root,KOG2384@2759|Eukaryota
Ec32 ortholog descriptionG-patch domain
Ec32 orthologEc-24_002800.1
Descriptionglycine rich nucleic binding domain
Cds size387
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.7676377-UTR-H-canaliculatus_M_contigs75461:0..151696854091.7676377-UTR-H-canaliculatus_M_contigs75461:0..15Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75461 1..15 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.780534-CDS-H-canaliculatus_M_contigs75461:15..4021696854091.780534-CDS-H-canaliculatus_M_contigs75461:15..402Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75461 16..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75461.1.1prot_H-canaliculatus_M_contigs75461.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75461 16..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75461.1.1

>prot_H-canaliculatus_M_contigs75461.1.1 ID=prot_H-canaliculatus_M_contigs75461.1.1|Name=mRNA_H-canaliculatus_M_contigs75461.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=129bp
MGWKLDEGLGARKQGRVNPLQTTFKRDTTGLGAGEKLRPRVTHFPSHVPS
QALNAPDGKSEAVRAHESLDRRRGRRRDRDGVRERRGRDAGGGSEAAHEP
RGHGRIPADSSSGGKGSADSWGGFWGQRT
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mRNA from alignment at H-canaliculatus_M_contigs75461:1..402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75461.1.1 ID=mRNA_H-canaliculatus_M_contigs75461.1.1|Name=mRNA_H-canaliculatus_M_contigs75461.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=402bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75461:1..402+ (Hapterophycus canaliculatus Oshoro7m male)
CAGCTGCTGGCGGGCATGGGCTGGAAGCTGGACGAGGGCCTCGGGGCTCG
GAAACAGGGCCGCGTCAACCCCCTCCAAACCACGTTCAAGAGGGACACCA
CTGGCCTGGGCGCCGGGGAGAAGCTGCGCCCTCGCGTCACCCATTTCCCG
TCGCACGTCCCGTCCCAGGCGCTCAACGCTCCCGACGGGAAAAGCGAAGC
CGTTCGGGCGCACGAGAGCCTCGACCGTCGGCGGGGGCGCCGGCGCGACA
GGGACGGGGTGAGAGAGCGTCGCGGTCGGGACGCGGGCGGTGGCTCGGAG
GCTGCCCACGAGCCGAGGGGTCACGGCCGCATACCTGCCGACTCGTCTTC
GGGAGGGAAGGGCTCAGCTGACTCCTGGGGAGGGTTCTGGGGACAAAGAA
CG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75461:1..402+

>mRNA_H-canaliculatus_M_contigs75461.1.1 ID=mRNA_H-canaliculatus_M_contigs75461.1.1|Name=mRNA_H-canaliculatus_M_contigs75461.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=387bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75461:1..402+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGGCTGGAAGCTGGACGAGGGCCTCGGGGCTCGGAAACAGGGCCGCGT
CAACCCCCTCCAAACCACGTTCAAGAGGGACACCACTGGCCTGGGCGCCG
GGGAGAAGCTGCGCCCTCGCGTCACCCATTTCCCGTCGCACGTCCCGTCC
CAGGCGCTCAACGCTCCCGACGGGAAAAGCGAAGCCGTTCGGGCGCACGA
GAGCCTCGACCGTCGGCGGGGGCGCCGGCGCGACAGGGACGGGGTGAGAG
AGCGTCGCGGTCGGGACGCGGGCGGTGGCTCGGAGGCTGCCCACGAGCCG
AGGGGTCACGGCCGCATACCTGCCGACTCGTCTTCGGGAGGGAAGGGCTC
AGCTGACTCCTGGGGAGGGTTCTGGGGACAAAGAACG
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